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  • Pharmacist
  • PhD Student
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  • Research Engineer
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  • Technician
  • Undergraduate Student
  • Veterinary
  • Visiting Scientist
  • Deputy Director of Center
  • Deputy Director of Department
  • Deputy Director of National Reference Center
  • Deputy Head of Facility
  • Director of Center
  • Director of Department
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© Research
Software

BPM – Beautiful Pattern Matching

Project leader: Yoann Dufresne
Scientific Fields
Diseases
Organisms
Applications
Technique
Starting Date
19
Jul 2018
Keywords
6 Keywords
Status
Ongoing
Members
1

About

BPM is a software for exact pattern matching of DNA. It can be seen as a DNA multi “grep”.

First, the tool preprocess a bunch of DNA patterns to create an index. Then, the index is used to search for all the patterns in one or more genomes. The tool is very fast and can process a classical bacterial genome, looking for hundreds of thousands of patterns in less than a second, using a single thread on a desktop computer.