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© Research
Publication : Bioinformatics (Oxford, England)

Eoulsan: a cloud computing-based framework facilitating high throughput sequencing analyses

Team: Biomics
Member: Marie-Agnès Dillies
Scientific Fields
Diseases
Organisms
Applications
Technique

Published in Bioinformatics (Oxford, England) - 05 Apr 2012

Jourdren L, Bernard M, Dillies MA, Le Crom S

Link to Pubmed [PMID] – 22492314

Bioinformatics 2012 Jun;28(11):1542-3

We developed a modular and scalable framework called Eoulsan, based on the Hadoop implementation of the MapReduce algorithm dedicated to high-throughput sequencing data analysis. Eoulsan allows users to easily set up a cloud computing cluster and automate the analysis of several samples at once using various software solutions available. Our tests with Amazon Web Services demonstrated that the computation cost is linear with the number of instances booked as is the running time with the increasing amounts of data.