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© Research
Publication : Journal of genomics

Draft genome sequences for three unisolated Alnus-infective Frankia Sp+ strains, AgTrS, AiOr and AvVan, the first sequenced Frankia strains able to sporulate in-planta.

Member: Najwa Taib
Scientific Fields
Diseases
Organisms
Applications
Technique

Published in Journal of genomics - 01 Jan 2019

Bethencourt L, Vautrin F, Taib N, Dubost A, Castro-Garcia L, Imbaud O, Abrouk D, Fournier P, Briolay J, Nguyen A, Normand P, Fernandez MP, Brochier-Armanet C, Herrera-Belaroussi A,

Link to Pubmed [PMID] – 31588247

Link to DOI – 10.7150/jgen.35875

J Genomics 2019 ; 7(): 50-55

Actinobacteria from genus Frankia are able to form symbiotic associations with actinorhizal plants including alders. Among them, Sp+ strains are characterized by their ability to differentiate numerous sporangia inside host plant cells (unlike “Sp-” strains unable of in-planta sporulation). Here, we report the first genome sequences of three unisolated Sp+ strains: AgTrS, AiOr and AvVan obtained from Alnus glutinosa, A. incana and A. alnobetula (previously known as viridis), respectively (with genome completeness estimated at more than 98%). They represent new Frankia species based on Average Nucleotide Identity (ANI) calculations, and the smallest Alnus-infective Frankia genomes so far sequenced (~5 Mbp), with 5,178, 6,192 and 5,751 candidate protein-encoding genes for AgTrS, AiOr and AvVan, respectively.