• 2024
  Chevalier C, Chica C, Matheau J, Pain A, Connor MG, Hamon MA, Epithelial cells maintain memory of prior infection with Streptococcus pneumoniae through di-methylation of histone H3., Nat Commun 2024 Jul; 15(1): 5545.
• 2023
  Crochemore C, Chica C, Garagnani P, Lattanzi G, Horvath S, Sarasin A, Franceschi C, Bacalini MG, Ricchetti M, Epigenomic signature of accelerated ageing in progeroid Cockayne syndrome., Aging Cell 2023 Sep; (): e13959.
• 2022
  Daunesse Maëlle, Legendre Rachel, Varet Hugo, Pain Adrien, Chica Claudia , ePeak: from replicated chromatin profiling data to epigenomic dynamics., NAR Genom Bioinform 2022 Jun; 4(2): lqac041.
• 2021
  Jagla B, Libri V, Chica C, Rouilly V, Mella S, Puceat M, Hasan M, , SCHNAPPs – Single Cell sHiNy APPlication(s)., J Immunol Methods 2021 12; 499(): 113176.
• 2021
  Mazzuoli MV, Daunesse M, Varet H, Rosinski-Chupin I, Legendre R, Sismeiro O, Gominet M, Kaminski PA, Glaser P, Chica C, Trieu-Cuot P, Firon A, , The CovR regulatory network drives the evolution of Group B Streptococcus virulence., PLoS Genet 2021 Sep; 17(9): e1009761.
• 2018
  Cossec JC*, Theurillat I*, Chica C, Bua Aguin S, Gaume X, Andrieux A, Iturbide A, Jouvion G, Li H, Bossis G, Seeler J-S, Torres-Padilla ME, Dejean A, SUMO safeguards somatic and pluripotent cell identities by enforcing distinct chromatin states, Cell Stem Cell. 2018 Nov 1;23(5):742-757.e8. doi: 10.1016/j.stem.2018.10.001.
• 2017
  Chica C, Louis A, Roest Crollius H, Colot V, Roudier F, Comparative epigenomics in the Brassicaceae reveals two evolutionarily conserved modes of PRC2-mediated gene regulation, Genome Biol. 2017 Oct;18(1):207.
• 2015
  Willing EM, Rawat V, Mandáková T, Maumus F, James GV, Nordström KJ, Becker C, Warthmann N, Chica C, Szarzynska B, Zytnicki M, Albani MC, Kiefer C, Bergonzi S, Castaings L, Mateos JL, Berns MC, Bujdoso N, Piofczyk T, de Lorenzo L, Barrero-Sicilia C, Mateos I, Piednoël M, Hagmann J, Chen-Min-Tao R, Iglesias-Fernández R, Schuster SC, Alonso-Blanco C, Roudier F, Carbonero P, Paz-Ares J, Davis SJ, Pecinka A, Quesneville H, Colot V, Lysak MA, Weigel D, Coupland G, Schneeberger K, Genome expansion of Arabis alpina linked with retrotransposition and reduced symmetric DNA methylation, Nat Plants 2015;1:14023.
• 2011
  Dinkel H, Michael S, Weatheritt RJ, Davey NE, Van Roey K, Altenberg B, Toedt G, Uyar B, Seiler M, Budd A, Jödicke L, Dammert MA, Schroeter C, Hammer M, Schmidt T, Jehl P, McGuigan C, Dymecka M, Chica C, Luck K, Via A, Chatr-Aryamontri A, Haslam N, Grebnev G, Edwards RJ, Steinmetz MO, Meiselbach H, Diella F, Gibson TJ, ELM–the database of eukaryotic linear motifs, Nucleic Acids Res. 2012 Jan;40(Database issue):D242-51.
• 2010
  Dinkel H, Chica C, Via A, Gould CM, Jensen LJ, Gibson TJ, Diella F, Phospho.ELM: a database of phosphorylation sites–update 2011, Nucleic Acids Res. 2011 Jan;39(Database issue):D261-7.
• 2009
  Gould CM, Diella F, Via A, Puntervoll P, Gemünd C, Chabanis-Davidson S, Michael S, Sayadi A, Bryne JC, Chica C, Seiler M, Davey NE, Haslam N, Weatheritt RJ, Budd A, Hughes T, Pas J, Rychlewski L, Travé G, Aasland R, Helmer-Citterich M, Linding R, Gibson TJ, ELM: the status of the 2010 eukaryotic linear motif resource, Nucleic Acids Res. 2010 Jan;38(Database issue):D167-80.
• 2009
  Chica C, Diella F, Gibson TJ, Evidence for the concerted evolution between short linear protein motifs and their flanking regions, PLoS ONE 2009;4(7):e6052.
• 2008
  Diella F, Chabanis S, Luck K, Chica C, Ramu C, Nerlov C, Gibson TJ, KEPE–a motif frequently superimposed on sumoylation sites in metazoan chromatin proteins and transcription factors, Bioinformatics 2009 Jan;25(1):1-5.
• 2008
  Chica C, Labarga A, Gould CM, López R, Gibson TJ, A tree-based conservation scoring method for short linear motifs in multiple alignments of protein sequences, BMC Bioinformatics 2008;9:229.
• 2008
  Diella F, Haslam N, Chica C, Budd A, Michael S, Brown NP, Trave G, Gibson TJ, Understanding eukaryotic linear motifs and their role in cell signaling and regulation, Front. Biosci. 2008;13:6580-603.
• 2008
  Perrodou E, Chica C, Poch O, Gibson TJ, Thompson JD, A new protein linear motif benchmark for multiple sequence alignment software, BMC Bioinformatics 2008;9:213.
• 2008
  Michael S, Travé G, Ramu C, Chica C, Gibson TJ, Discovery of candidate KEN-box motifs using cell cycle keyword enrichment combined with native disorder prediction and motif conservation, Bioinformatics 2008 Feb;24(4):453-7.
• 2007
  Diella F, Gould CM, Chica C, Via A, Gibson TJ, Phospho.ELM: a database of phosphorylation sites–update 2008, Nucleic Acids Res. 2008 Jan;36(Database issue):D240-4.
• 2007
  Benedetto D, Caglioti E, Chica C, Compressing proteomes: the relevance of medium range correlations, EURASIP J Bioinform Syst Biol 2007;:60723.
• 2006
  Chica C, Jost C, Féthière J, Reynaud EG, Adéquation Germany, meeting the needs of scientists in the developing world, Biotechnol J 2006 Dec;1(12):1347-50.