• 2025
  Nora Zidane, Carla Rodrigues, Valerie Bouchez, Martin Rethoret-Pasty, Virginie Passet, Sylvain Brisse, Chiara Crestani, Accurate genotyping of three major respiratory bacterial pathogens with ONT R10.4.1 long-read sequencing, Genome Research, In press, pp.gr.279829.124. ⟨10.1101/gr.279829.124⟩.
• 2024
  Leroux P, Matczak S, Bouchez V, Volant S, Ouziel A, Launay E, Faye A, Rabier V, Sarlangue J, Jeziorski E, Maakaroun-Vermesse Z, Madhi F, Pinquier D, Lorrot M, Pouletty M, Cantais A, Javouhey E, Aït Belghiti F, Guillot S, Rodrigues C, Brisse S, Cohen JF, Toubiana J, Association between pertactin-producing Bordetella pertussis and fulminant pertussis in infants: a multicenter study in France, 2008-2019., Clin Microbiol Infect 2024 Sep; (): .
• 2024
  Rodrigues C, Bouchez V, Soares A, Trombert-Paolantoni S, Aït El Belghiti F, Cohen JF, Armatys N, Landier A, Blanchot T, Hervo M, , Toubiana J, Brisse S, Resurgence of Bordetella pertussis, including one macrolide-resistant isolate, France, 2024., Euro Surveill 2024 Aug; 29(31): .
• 2023
  Lourenço M, Osbelt L, Passet V, Gravey F, Megrian D, Strowig T, Rodrigues C, Brisse S, Phages against Noncapsulated Klebsiella pneumoniae: Broader Host range, Slower Resistance., Microbiol Spectr 2023 Jun; (): e0481222.
• 2022
  Garcia-Fierro R, Drapeau A, Dazas M, Saras E, Rodrigues C, Brisse S, Madec JY, Haenni M, , Comparative phylogenomics of ESBL-, AmpC- and carbapenemase-producing Klebsiella pneumoniae originating from companion animals and humans., J Antimicrob Chemother 2022 Feb; (): .
• 2022
  Rodrigues C, Hauser K, Cahill N, Ligowska-Marzęta M, Centorotola G, Cornacchia A, Garcia Fierro R, Haenni M, Nielsen EM, Piveteau P, Barbier E, Morris D, Pomilio F, Brisse S, , High Prevalence of Klebsiella pneumoniae in European Food Products: a Multicentric Study Comparing Culture and Molecular Detection Methods., Microbiol Spectr 2022 02; 10(1): e0237621.
• 2022
  Bridel S, Watts SC, Judd LM, Harshegyi T, Passet V, Rodrigues C, Holt KE, Brisse S, , Klebsiella MALDI TypeR: a web-based tool for Klebsiella identification based on MALDI-TOF mass spectrometry., Res Microbiol ; 172(4-5): 103835.
• 2022
  Rodrigues C, Desai S, Passet V, Gajjar D, Brisse S, , Genomic evolution of the globally disseminated multidrug-resistant Klebsiella pneumoniae clonal group 147., Microb Genom 2022 01; 8(1): .
• 2021
  Silva L, Grosso F, Rodrigues C, Ksiezarek M, Ramos H, Peixe L, , The success of particular Acinetobacter baumannii clones: accumulating resistance and virulence inside a sugary shield., J Antimicrob Chemother 2021 01; 76(2): 305-311.
• 2020
  Silva L, Rodrigues C, Lira A, Leão M, Mota M, Lopes P, Novais Â, Peixe L, , Fourier transform infrared (FT-IR) spectroscopy typing: a real-time analysis of an outbreak by carbapenem-resistant Klebsiella pneumoniae., Eur J Clin Microbiol Infect Dis 2020 Dec; 39(12): 2471-2475.
• 2020
  Hennart M, Panunzi LG, Rodrigues C, Gaday Q, Baines SL, Barros-Pinkelnig M, Carmi-Leroy A, Dazas M, Wehenkel AM, Didelot X, Toubiana J, Badell E, Brisse S, , Population genomics and antimicrobial resistance in Corynebacterium diphtheriae., Genome Med 2020 11; 12(1): 107.
• 2020
  Huynh BT, Passet V, Rakotondrasoa A, Diallo T, Kerleguer A, Hennart M, Lauzanne A, Herindrainy P, Seck A, Bercion R, Borand L, Pardos de la Gandara M, Delarocque-Astagneau E, Guillemot D, Vray M, Garin B, Collard JM, Rodrigues C, Brisse S, Klebsiella pneumoniae carriage in low-income countries: antimicrobial resistance, genomic diversity and risk factors., Gut Microbes 2020 Sep; 11(5): 1287-1299.
• 2020
  Rodrigues C, d'Humières C, Papin G, Passet V, Ruppé E, Brisse S, , Community-acquired infection caused by the uncommon hypervirulent Klebsiella pneumoniae ST66-K2 lineage., Microb Genom 2020 08; 6(8): .
• 2020
  Rodrigues C, Sousa C, Lopes JA, Novais Â, Peixe L, , A Front Line on Klebsiella pneumoniae Capsular Polysaccharide Knowledge: Fourier Transform Infrared Spectroscopy as an Accurate and Fast Typing Tool., mSystems 2020 Mar; 5(2): .
• 2020
  Barbier E, Rodrigues C, Depret G, Passet V, Gal L, Piveteau P, Brisse S, , The ZKIR Assay, a Real-Time PCR Method for the Detection of Klebsiella pneumoniae and Closely Related Species in Environmental Samples., Appl Environ Microbiol 2020 03; 86(7): .
• 2020
  Badell E, Hennart M, Rodrigues C, Passet V, Dazas M, Panunzi L, Bouchez V, Carmi-Leroy A, Toubiana J, Brisse S, , Corynebacterium rouxii sp. nov., a novel member of the diphtheriae species complex., Res Microbiol ; 171(3-4): 122-127.
• 2019
  Rodrigues C, Passet V, Rakotondrasoa A, Diallo TA, Criscuolo A, Brisse S, , Erratum to “Description of Klebsiella africanensis sp. nov., Klebsiella variicola subsp. tropicalensis subsp. nov. and Klebsiella variicola subsp. variicola subsp. nov.” [Res Microbiol 170 (3) (2019) 165-170]., Res Microbiol ; 170(6-7): 300.
• 2019
  Ribeiro TG, Novais Â, Rodrigues C, Nascimento R, Freitas F, Machado E, Peixe L, , Dynamics of clonal and plasmid backgrounds of Enterobacteriaceae producing acquired AmpC in Portuguese clinical settings over time., Int J Antimicrob Agents 2019 May; 53(5): 650-656.
• 2019
  Novais Â, Freitas AR, Rodrigues C, Peixe L, , Fourier transform infrared spectroscopy: unlocking fundamentals and prospects for bacterial strain typing., Eur J Clin Microbiol Infect Dis 2019 Mar; 38(3): 427-448.
• 2019
  Rodrigues C, Passet V, Rakotondrasoa A, Diallo TA, Criscuolo A, Brisse S, , Description of Klebsiella africanensis sp. nov., Klebsiella variicola subsp. tropicalensis subsp. nov. and Klebsiella variicola subsp. variicola subsp. nov., Res Microbiol ; 170(3): 165-170.
• 2019
  Merla C, Rodrigues C, Passet V, Corbella M, Thorpe HA, Kallonen TVS, Zong Z, Marone P, Bandi C, Sassera D, Corander J, Feil EJ, Brisse S, , Description of Klebsiella spallanzanii sp. nov. and of Klebsiella pasteurii sp. nov., Front Microbiol 2019 ; 10(): 2360.
• 2018
  Andrade LN, Novais Â, Stegani LMM, Ferreira JC, Rodrigues C, Darini ALC, Peixe L, , Virulence genes, capsular and plasmid types of multidrug-resistant CTX-M(-2, -8, -15) and KPC-2-producing Klebsiella pneumoniae isolates from four major hospitals in Brazil., Diagn Microbiol Infect Dis 2018 Jun; 91(2): 164-168.
• 2018
  Mendes AC, Novais Â, Campos J, Rodrigues C, Santos C, Antunes P, Ramos H, Peixe L, , mcr-1 in Carbapenemase-Producing Klebsiella pneumoniae with Hospitalized Patients, Portugal, 2016-2017., Emerg Infect Dis 2018 04; 24(4): 762-766.
• 2018
  Rodrigues C, Passet V, Rakotondrasoa A, Brisse S, , Identification of Klebsiella pneumoniae, Klebsiella quasipneumoniae, Klebsiella variicola and Related Phylogroups by MALDI-TOF Mass Spectrometry., Front Microbiol 2018 ; 9(): 3000.
• 2017
  Rodrigues C, Machado E, Fernandes S, Peixe L, Novais Â, , Different Escherichia coli B2-ST131 clades (B and C) producing extended-spectrum β-lactamases (ESBL) colonizing residents of Portuguese nursing homes., Epidemiol Infect 2017 11; 145(15): 3303-3306.
• 2017
  Rodrigues C, Mendes AC, Sima F, Bavlovič J, Machado E, Novais Â, Peixe L, , Long-Term Care Facility (LTCF) Residents Colonized With Multidrug-Resistant (MDR) Klebsiella pneumoniae Lineages Frequently Causing Infections in Portuguese Clinical Institutions., Infect Control Hosp Epidemiol 2017 09; 38(9): 1127-1130.
• 2017
  Rodrigues C, Novais Â, Sousa C, Ramos H, Coque TM, Cantón R, Lopes JA, Peixe L, , Elucidating constraints for differentiation of major human Klebsiella pneumoniae clones using MALDI-TOF MS., Eur J Clin Microbiol Infect Dis 2017 Feb; 36(2): 379-386.
• 2016
  Czobor I, Novais Â, Rodrigues C, Chifiriuc MC, Mihăescu G, Lazăr V, Peixe L, , Efficient transmission of IncFIIY and IncL plasmids and Klebsiella pneumoniae ST101 clone producing OXA-48, NDM-1 or OXA-181 in Bucharest hospitals., Int J Antimicrob Agents 2016 Aug; 48(2): 223-4.
• 2016
  Rodrigues C, Machado E, Fernandes S, Peixe L, Novais Â, , An update on faecal carriage of ESBL-producing Enterobacteriaceae by Portuguese healthy humans: detection of the H30 subclone of B2-ST131 Escherichia coli producing CTX-M-27., J Antimicrob Chemother 2016 Apr; 71(4): 1120-2.
• 2016
  Mendes AC, Rodrigues C, Pires J, Amorim J, Ramos MH, Novais Â, Peixe L, , Importation of Fosfomycin Resistance fosA3 Gene to Europe., Emerg Infect Dis 2016 Feb; 22(2): 346-8.
• 2016
  Rodrigues C, Bavlovič J, Machado E, Amorim J, Peixe L, Novais Â, , KPC-3-Producing Klebsiella pneumoniae in Portugal Linked to Previously Circulating Non-CG258 Lineages and Uncommon Genetic Platforms (Tn4401d-IncFIA and Tn4401d-IncN)., Front Microbiol 2016 ; 7(): 1000.
• 2015
  Gheorghe I, Novais Â, Grosso F, Rodrigues C, Chifiriuc MC, Lazar V, Peixe L, , Snapshot on carbapenemase-producing Pseudomonas aeruginosa and Acinetobacter baumannii in Bucharest hospitals reveals unusual clones and novel genetic surroundings for blaOXA-23., J Antimicrob Chemother 2015 Apr; 70(4): 1016-20.
• 2015
  Rodrigues C, Machado E, Pires J, Ramos H, Novais Â, Peixe L, , Increase of widespread A, B1 and D Escherichia coli clones producing a high diversity of CTX-M-types in a Portuguese hospital., Future Microbiol 2015 ; 10(7): 1125-31.
• 2014
  Rodrigues C, Machado E, Ramos H, Peixe L, Novais Â, , Expansion of ESBL-producing Klebsiella pneumoniae in hospitalized patients: a successful story of international clones (ST15, ST147, ST336) and epidemic plasmids (IncR, IncFIIK)., Int J Med Microbiol 2014 Nov; 304(8): 1100-8.
• 2014
  Rodrigues C, Novais Â, Machado E, Peixe L, , Detection of VIM-34, a novel VIM-1 variant identified in the intercontinental ST15 Klebsiella pneumoniae clone., J Antimicrob Chemother 2014 Jan; 69(1): 274-5.
• 2013
  Rodrigues C, Machado E, Peixe L, Novais A, , IncI1/ST3 and IncN/ST1 plasmids drive the spread of blaTEM-52 and blaCTX-M-1/-32 in diverse Escherichia coli clones from different piggeries., J Antimicrob Chemother 2013 Oct; 68(10): 2245-8.
• 2012
  Novais A, Rodrigues C, Branquinho R, Antunes P, Grosso F, Boaventura L, Ribeiro G, Peixe L, , Spread of an OmpK36-modified ST15 Klebsiella pneumoniae variant during an outbreak involving multiple carbapenem-resistant Enterobacteriaceae species and clones., Eur J Clin Microbiol Infect Dis 2012 Nov; 31(11): 3057-63.
• 2011
  Poirel L, Castanheira M, Carrër A, Rodriguez CP, Jones RN, Smayevsky J, Nordmann P, , OXA-163, an OXA-48-related class D β-lactamase with extended activity toward expanded-spectrum cephalosporins., Antimicrob Agents Chemother 2011 Jun; 55(6): 2546-51.