• 2025
  Xin GY, Wang DX, Zhang X, Cen QQ, Peng MW, Liao YQ, Wang J, Le SJ, Cheng JX, Wu WC, Hou X#, Luo GY, Gou QY, Kong JB, Pan Z, Li DQ, Gan SP, Chen A, Zhao HL, Shi PB, Ren ZR, Zhao WQ, Liu JJ, Jia PH, Sun CY, Lin WQ, Wu J, Kuang GP, Chen JD, Li JH, Holmes EC, Deng ZQ, Shi M. , Infectome analysis of small mammals in Southern China reveals ecological associations and emerging threats from diverse pathogens, bioRxiv.
• 2025
  Hou X#, Wang J, Wang DX, Chen Y, Li XX, Wu WC, Le SJ, Mei SQ, Liu HL, Feng Y, Yang LF, Shi PB, Ren ZR, Yang L, He HJ, Song WJ, Chen J, Zhu MM, Jiang ZW, Li XM, Guo D, Holmes EC, Deng ZQ, Shi M., Comprehensive infectome analysis reveals diverse infectious agents with zoonotic potential in wildlife, bioRxiv.
• 2024
  Hou X#, He Y, Fang P, Mei SQ, Xu Z, Wu WC, Tian JH, Zhang S, Zeng ZY, Gou QY, Xin GY, Le SJ, Xia YY, Zhou YL, Hui FM, Pan YF, Eden JS, Yang ZH, Han C, Shu YL, Guo D, Li J, Holmes EC, Li ZR, Shi M, Using artificial intelligence to document the hidden RNA virosphere, Cell. 2024 Nov 27;187(24):6929-6942.e16.
• 2024
  Pan YF, Zhao H, Gou QY, Shi PB, Tian JH, Feng Y, Li K, Yang WH, Wu D, Tang G, Zhang B, Ren Z, Peng S, Luo GY, Le SJ, Xin GY, Wang J, Hou X#, Peng MW, Kong JB, Chen XX, Yang CH, Mei SQ, Liao YQ, Cheng JX, Wang J, Chaolemen, Wu YH, Wang JB, An T, Huang X, Eden JS, Li J, Guo D, Liang G, Jin X, Holmes EC, Li B, Wang D, Li J, Wu WC, Shi M, Metagenomic analysis of individual mosquito viromes reveals the geographical patterns and drivers of viral diversity, Nat Ecol Evol. 2024 May;8(5):947-959.
• 2022
  Tian J, Hou X#, Ge M, Xu H, Yu B, Liu J, Shao R, Holmes EC, Lei C, Shi M, The diversity and evolutionary relationships of ticks and tick-borne bacteria collected in China, Parasites & vectors. 2022 Oct 1;15(1):352.
• 2022
  Wang J, Gou QY, Luo GY, Hou X#, Liang G, Shi M, Total RNA sequencing of Phlebotomus chinensis sandflies in China revealed viral, bacterial, and eukaryotic microbes potentially pathogenic to humans, Emerg Microbes Infect. 2022 Dec;11(1):2080-2092.
• 2022
  Shi WF, Shi M, Que TC, Cui XM, Ye RZ, Xia LY, Hou X#, Zheng JJ, Jia N, Xie X, Wu WC, He MH, Wang HF, Wei YJ, Wu AQ, Zhang SF, Pan YS, Chen PY, Wang Q, Li SS, Zhong YL, Li YJ, Tan LH, Zhao L, Jiang JF, Hu YL, Cao WC, Trafficked Malayan pangolins contain viral pathogens of humans, Nat Microbiol. 2022 Aug;7(8):1259-1269.
• 2022
  Huang X, Wu W, Tian X, Hou X#, Cui X, Xiao Y, Jiao Q, Zhou P, Liu L, Shi W, Chen L, Sun Y, Yang Y, Chen J, Zhang G, Liu J, Holmes EC, Cai X, An T, Shi M, A total infectome approach to understand the etiology of infectious disease in pigs, Microbiome. 2022 May 10;10(1):73.
• 2022
  He WT, Hou X#, Zhao J, Sun J, He H, Si W, Wang J, Jiang Z, Yan Z, Xing G, Lu M, Suchard MA, Ji X, Gong W, He B, Li J, Lemey P, Guo D, Tu C, Holmes EC, Shi M, Su S, Virome characterization of game animals in China reveals a spectrum of emerging pathogens, Cell. 2022 Mar 31;185(7):1117-1129.e8.
• 2021
  Xu Z, Fan N, Hou X#, Wang J, Fu S, Song J, Shi M, Liang G, Isolation and Identification of a Novel Phlebovirus, Hedi Virus, from Sandflies Collected in China, Viruses. 2021 Apr 27;13(5):772.