• 2025
  Harastani M, Patra G, Kervrann C, Eltsov M, Template Learning: Deep learning with domain randomization for particle picking in cryo-electron tomography., Nat Commun 2025 Oct; 16(1): 8833.
• 2023
  Vuillemot R, Harastani M, Hamitouche I, Jonic S, MDSPACE and MDTOMO Software for Extracting Continuous Conformational Landscapes from Datasets of Single Particle Images and Subtomograms Based on Molecular Dynamics Simulations: Latest Developments in ContinuousFlex Software Package., Int J Mol Sci 2023 Dec; 25(1): .
• 2023
  Herreros D, Krieger JM, Fonseca Y, Conesa P, Harastani M, Vuillemot R, Hamitouche I, Serrano Gutiérrez R, Gragera M, Melero R, Jonic S, Carazo JM, Sorzano COS, Scipion Flexibility Hub: an integrative framework for advanced analysis of conformational heterogeneity in cryoEM., Acta Crystallogr D Struct Biol 2023 Jul; 79(Pt 7): 569-584.
• 2023
  Vuillemot R, Mirzaei A, Harastani M, Hamitouche I, Fréchin L, Klaholz BP, Miyashita O, Tama F, Rouiller I, Jonic S, MDSPACE: Extracting Continuous Conformational Landscapes from Cryo-EM Single Particle Datasets Using 3D-to-2D Flexible Fitting based on Molecular Dynamics Simulation., J Mol Biol 2023 May; 435(9): 167951.
• 2022
  Harastani M, Vuillemot R, Hamitouche I, Moghadam NB, Jonic S, ContinuousFlex: Software package for analyzing continuous conformational variability of macromolecules in cryo electron microscopy and tomography data., J Struct Biol 2022 Dec; 214(4): 107906.
• 2022
  Jiménez de la Morena J, Conesa P, Fonseca YC, de Isidro-Gómez FP, Herreros D, Fernández-Giménez E, Strelak D, Moebel E, Buchholz TO, Jug F, Martinez-Sanchez A, Harastani M, Jonic S, Conesa JJ, Cuervo A, Losana P, Sánchez I, Iceta M, Del Cano L, Gragera M, Melero R, Sharov G, Castaño-Díez D, Koster A, Piccirillo JG, Vilas JL, Otón J, Marabini R, Sorzano COS, Carazo JM, ScipionTomo: Towards cryo-electron tomography software integration, reproducibility, and validation., J Struct Biol 2022 Sep; 214(3): 107872.
• 2022
  Harastani M, Eltsov M, Leforestier A, Jonic S, TomoFlow: Analysis of Continuous Conformational Variability of Macromolecules in Cryogenic Subtomograms based on 3D Dense Optical Flow., J Mol Biol 2022 Jan; 434(2): 167381.
• 2021
  Strelak D, Jiménez-Moreno A, Vilas JL, Ramírez-Aportela E, Sánchez-García R, Maluenda D, Vargas J, Herreros D, Fernández-Giménez E, de Isidro-Gómez FP, Horacek J, Myska D, Horacek M, Conesa P, Fonseca-Reyna YC, Jiménez J, Martínez M, Harastani M, Jonić S, Filipovic J, Marabini R, Carazo JM, Sorzano COS, Advances in Xmipp for Cryo-Electron Microscopy: From Xmipp to Scipion., Molecules 2021 Oct; 26(20): .
• 2021
  Harastani M, Eltsov M, Leforestier A, Jonic S, HEMNMA-3D: Cryo Electron Tomography Method Based on Normal Mode Analysis to Study Continuous Conformational Variability of Macromolecular Complexes., Front Mol Biosci 2021 ; 8(): 663121.
• 2020
  Harastani M, Sorzano COS, Jonić S, Hybrid Electron Microscopy Normal Mode Analysis with Scipion., Protein Sci 2020 Jan; 29(1): 223-236.
• 2020
  Harastani M, Benterkia A, Zadeh FM, Nait-Ali A, Methamphetamine drug abuse and addiction: Effects on face asymmetry., Comput Biol Med 2020 Jan; 116(): 103475.