• 2025
  Lopopolo M, Avanzi C, Duchene S, Luisi P, de Flamingh A, Ponce-Soto GY, Tressieres G, Neumeyer S, Lemoine F, Nelson EA, Iraeta-Orbegozo M, Cybulski JS, Mitchell J, Marks VT, Adams LB, Lindo J, DeGiorgio M, Ortiz N, Wiens C, Hiebert J, Bonifaz A, Montes de Oca G, Paredes-Solis V, Franco-Paredes C, Vera-Cabrera L, Pereira Brunelli JG, Jackson M, Spencer JS, Salgado CG, Han XY, Pearce CM, Warren AK, Rosa PS, de Finardi AJ, Belone AFF, Ferreira C, Suffys PN, Fontes ANB, Vasconcellos SEG, Schaub R, Couppié P, Drak Alsibai K, Hernández-Castro R, Silva Miranda M, Estrada-Garcia I, Jurado-Santacruz F, Orlando L, Schroeder H, Quintana-Murci L, Del Papa M, Lahiri R, Malhi RS, Rasmussen S, Rascovan N, Pre-European contact leprosy in the Americas and its current persistence., Science 2025 May; (): eadu7144.
• 2025
  Augias A, Ponce-Soto GY, Chimènes A, Charlier P, Rascovan N, An ancient Epstein-Barr virus genome recovered from a museum penis gourd from Papua., J Infect Dis 2025 Apr; (): .
• 2023
  Quiroz-Morales SE, Muriel-Millán LF, Ponce-Soto GY, González-Valdez A, Castillo-Juárez I, Servín-González L, Soberón-Chávez G, Pseudomonas aeruginosa strains belonging to phylogroup 3 frequently exhibit an atypical quorum sensing response: the case of MAZ105, a tomato rhizosphere isolate., Microbiology (Reading) 2023 Oct; 169(10): .
• 2023
  Maxime Borry, Adrian Forsythe, Aida Andrades Valtueña, Alexander Hübner, Anan Ibrahim, Andrea Quagliariello, Anna E White, Arthur Kocher, Bjørn Peare Bartholdy, Diāna Spurīte, Gabriel Yaxal Ponce-Soto, Gunnar Neumann, I-Ting Huang, Ian Light, Irina M Velsko, Iseult Jackson, Jasmin Frangenberg, Javier G Serrano, Julien Fumey, Kadir T Özdoğan, Kelly E Blevins, Kevin G Daly, Maria Lopopolo, Markella Moraitou, Megan Michel, Meriam van Os, Miriam J Bravo-Lopez, Mohamed S Sarhan, Nihan D Dagtas, Nikolay Oskolkov, Olivia S Smith, Ophélie Lebrasseur, Piotr Rozwalak, Raphael Eisenhofer, Sally Wasef, Shreya L Ramachandran, Valentina Vanghi, Christina Warinner, James A Fellows Yates, Facilitating accessible, rapid, and appropriate processing of ancient metagenomic data with AMDirT, F1000Research, 2023, 12, pp.926. ⟨10.12688/f1000research.134798.1⟩.
• 2023
  Borry M, Forsythe A, Andrades Valtueña A, Hübner A, Ibrahim A, Quagliariello A, White AE, Kocher A, Vågene ÅJ, Bartholdy BP, Spurīte D, Ponce-Soto GY, Neumann G, Huang IT, Light I, Velsko IM, Jackson I, Frangenberg J, Serrano JG, Fumey J, Özdoğan KT, Blevins KE, Daly KG, Lopopolo M, Moraitou M, Michel M, van Os M, Bravo-Lopez MJ, Sarhan MS, Dagtas ND, Oskolkov N, Smith OS, Lebrasseur O, Rozwalak P, Eisenhofer R, Wasef S, Ramachandran SL, Vanghi V, Warinner C, Fellows Yates JA, Facilitating accessible, rapid, and appropriate processing of ancient metagenomic data with AMDirT., F1000Res 2023 ; 12(): 926.
• 2022
  Hajheidari M, Gerlach N, Dorau K, Omidbakhshfard MA, Pesch L, Hofmann J, Hallab A, Ponce-Soto GY, Kuhalskaya A, Medeiros DB, Bourceret A, , Usadel B, Mayer J, Fernie A, Mansfeldt T, Sonnewald U, Bucher M, Crop genetic diversity uncovers metabolites, elements, and gene networks predicted to be associated with high plant biomass yields in maize., PNAS Nexus 2022 Jul; 1(3): pgac068.
• 2020
  Vázquez-Rosas-Landa M, Ponce-Soto GY, Aguirre-Liguori JA, Thakur S, Scheinvar E, Barrera-Redondo J, Ibarra-Laclette E, Guttman DS, Eguiarte LE, Souza V, Population genomics of Vibrionaceae isolated from an endangered oasis reveals local adaptation after an environmental perturbation., BMC Genomics 2020 Jun; 21(1): 418.
• 2019
  Ramírez-Nava EJ, Ortega-Cuellar D, González-Valdez A, Castillo-Rodríguez RA, Ponce-Soto GY, Hernández-Ochoa B, Cárdenas-Rodríguez N, Martínez-Rosas V, Morales-Luna L, Serrano-Posada H, Sierra-Palacios E, Arreguin-Espinosa R, Cuevas-Cruz M, Rocha-Ramírez LM, Pérez de la Cruz V, Marcial-Quino J, Gómez-Manzo S, Molecular Cloning and Exploration of the Biochemical and Functional Analysis of Recombinant Glucose-6-Phosphate Dehydrogenase from Gluconoacetobacter diazotrophicus PAL5., Int J Mol Sci 2019 Oct; 20(21): .
• 2019
  Martínez-Carranza E, Ponce-Soto GY, Servín-González L, Alcaraz LD, Soberón-Chávez G, Evolution of bacteria seen through their essential genes: the case of Pseudomonas aeruginosa and Azotobacter vinelandii., Microbiology (Reading) 2019 Sep; 165(9): 976-984.
• 2019
  García-Ulloa M, Ponce-Soto GY, González-Valdez A, González-Pedrajo B, Díaz-Guerrero M, Souza V, Soberón-Chávez G, Two Pseudomonas aeruginosa clonal groups belonging to the PA14 clade are indigenous to the Churince system in Cuatro Ciénegas Coahuila, México., Environ Microbiol 2019 Aug; 21(8): 2964-2976.
• 2019
  Schwacke R, Ponce-Soto GY, Krause K, Bolger AM, Arsova B, Hallab A, Gruden K, Stitt M, Bolger ME, Usadel B, MapMan4: A Refined Protein Classification and Annotation Framework Applicable to Multi-Omics Data Analysis., Mol Plant 2019 Jun; 12(6): 879-892.
• 2018
  Martínez-Carranza E, Ponce-Soto GY, Díaz-Pérez AL, Cadenas E, Souza V, Campos-García J, Involvement of cyclodipeptides in the competition of bacterial communities in the oligotrophic Churince aquatic system of Cuatro Ciénegas Basin dominated by Gammaproteobacteria., Extremophiles 2018 Jan; 22(1): 73-85.
• 2018
  Martínez-Carranza E, Barajas H, Alcaraz LD, Servín-González L, Ponce-Soto GY, Soberón-Chávez G, Variability of Bacterial Essential Genes Among Closely Related Bacteria: The Case of Escherichia coli., Front Microbiol 2018 ; 9(): 1059.
• 2018
  Martínez-Carranza E, Barajas H, Alcaraz LD, Servín-González L, Ponce-Soto GY, Soberón-Chávez G, Corrigendum: Variability of Bacterial Essential Genes Among Closely Related Bacteria: The Case of Escherichia coli., Front Microbiol 2018 ; 9(): 2330.
• 2017
  Vázquez-Rosas-Landa M, Ponce-Soto GY, Eguiarte LE, Souza V, Comparative genomics of free-living Gammaproteobacteria: pathogenesis-related genes or interaction-related genes?, Pathog Dis 2017 Jul; 75(5): .
• 2017
  Soberón-Chávez G, Alcaraz LD, Morales E, Ponce-Soto GY, Servín-González L, The Transcriptional Regulators of the CRP Family Regulate Different Essential Bacterial Functions and Can Be Inherited Vertically and Horizontally., Front Microbiol 2017 ; 8(): 959.
• 2016
  Grosso-Becerra MV, González-Valdez A, Granados-Martínez MJ, Morales E, Servín-González L, Méndez JL, Delgado G, Morales-Espinosa R, Ponce-Soto GY, Cocotl-Yañez M, Soberón-Chávez G, Pseudomonas aeruginosa ATCC 9027 is a non-virulent strain suitable for mono-rhamnolipids production., Appl Microbiol Biotechnol 2016 Dec; 100(23): 9995-10004.
• 2015
  Ponce-Soto GY, Aguirre-von-Wobeser E, Eguiarte LE, Elser JJ, Lee ZM, Souza V, Enrichment experiment changes microbial interactions in an ultra-oligotrophic environment., Front Microbiol 2015 ; 6(): 246.
• 2014
  Aguirre-von-Wobeser E, Soberón-Chávez G, Eguiarte LE, Ponce-Soto GY, Vázquez-Rosas-Landa M, Souza V, Two-role model of an interaction network of free-living γ-proteobacteria from an oligotrophic environment., Environ Microbiol 2014 May; 16(5): 1366-77.