• 2025
  Miguel Gomez-Raya-Vilanova, Jérôme Teulière, Sofia Medvedeva, Yuping Dai, Eduardo Corel, Philippe Lopez, François-Joseph Lapointe, Debashish Bhattacharya, Louis-Patrick Haraoui, Elodie Turc, Marc Monot, Virginija Cvirkaite-Krupovic, Eric Bapteste, Mart Krupovic, Transcriptional landscape of the cell cycle in a model thermoacidophilic archaeon reveals similarities to eukaryotes, Nature Communications, 2025, 16 (1), pp.5697. ⟨10.1038/s41467-025-60613-8⟩.
• 2025
  Krupovic M, Baquero DP, Bignon EA, Bize A, Borrel G, Cai M, Chen L, Coves M, Duan C, Gribaldo S, Koonin EV, Li M, Liu L, Liu Y, Liu Y, Medvedeva S, et al., Summary of taxonomy changes ratified by the International Committee on Taxonomy of Viruses (ICTV) from the Archaeal Viruses Subcommittee, 2025, J Gen Virol 2025 Jul; 106(7):002117.
• 2025
  Yoshida M*, Medvedeva S*, Fukudome A, Wolf YI, Urayama SI, Nishimura Y, Takaki Y, Koonin EV, Krupovic M, Nunoura T, “Paraxenoviridae”, a putative family of globally distributed marine bacteriophages with double-stranded RNA genomes, ISME J 2025 Jan; 19(1):wraf139.
• 2024
  Diana P Baquero, Sofia Medvedeva, Camille Martin-Gallausiaux, Nika Pende, Anna Sartori-Rupp, Stéphane Tachon, Thierry Pedron, Laurent Debarbieux, Guillaume Borrel, Simonetta Gribaldo, Mart Krupovic, Stable coexistence between an archaeal virus and the dominant methanogen of the human gut, Nature Communications, 2024, 15 (1), pp.7702. ⟨10.1038/s41467-024-51946-x⟩.
• 2024
  Sofia Medvedeva, Guillaume Borrel, Simonetta Gribaldo, Sheaths are diverse and abundant cell surface layers in archaea, The International Society of Microbiologial Ecology Journal, 2024, 18 (1), pp.wrae225. ⟨10.1093/ismejo/wrae225⟩.
• 2023
  Medvedeva S, Borrel G, Krupovic M, Gribaldo S, A compendium of viruses from methanogenic archaea reveals their diversity and adaptations to the gut environment., Nat Microbiol 2023 Nov; 8(11): 2170-2182.
• 2022
  Medvedeva S, Sun J, Yutin N, Koonin EV, Nunoura T, Rinke C, Krupovic M, Three families of Asgard archaeal viruses identified in metagenome-assembled genomes, Nat Microbiol 2022 Jul; 7(7): 962-973.
• 2021
  Medvedeva S, Brandt D, Cvirkaite-Krupovic V, Liu Y, Severinov K, Ishino S, Ishino Y, Prangishvili D, Kalinowski J, Krupovic M, New insights into the diversity and evolution of the archaeal mobilome from three complete genomes of Saccharolobus shibatae, Environ Microbiol 2021 Jun; 23(8):4612-4630.
• 2019
  Medvedeva S, Liu Y, Koonin EV, Severinov K, Prangishvili D, Krupovic M, Virus-borne mini-CRISPR arrays are involved in interviral conflicts, Nat Commun 2019 Nov;10(1):5204.
• 2019
  Krupovic M, Makarova KS, Wolf YI, Medvedeva S, Prangishvili D, Forterre P, Koonin EV, Integrated mobile genetic elements in Thaumarchaeota, Environ. Microbiol. 2019 Jun;21(6):2056-2078.