• 2023
  Maxime Borry, Adrian Forsythe, Aida Andrades Valtueña, Alexander Hübner, Anan Ibrahim, Andrea Quagliariello, Anna E White, Arthur Kocher, Bjørn Peare Bartholdy, Diāna Spurīte, Gabriel Yaxal Ponce-Soto, Gunnar Neumann, I-Ting Huang, Ian Light, Irina M Velsko, Iseult Jackson, Jasmin Frangenberg, Javier G Serrano, Julien Fumey, Kadir T Özdoğan, Kelly E Blevins, Kevin G Daly, Maria Lopopolo, Markella Moraitou, Megan Michel, Meriam van Os, Miriam J Bravo-Lopez, Mohamed S Sarhan, Nihan D Dagtas, Nikolay Oskolkov, Olivia S Smith, Ophélie Lebrasseur, Piotr Rozwalak, Raphael Eisenhofer, Sally Wasef, Shreya L Ramachandran, Valentina Vanghi, Christina Warinner, James A Fellows Yates, Facilitating accessible, rapid, and appropriate processing of ancient metagenomic data with AMDirT, F1000Research, 2023, 12, pp.926. ⟨10.12688/f1000research.134798.1⟩.
• 2023
  Legendre L, Rode J, Germon I, Pavie M, Quiviger C, Policarpo M, Leclercq J, Père S, Fumey J, Hyacinthe C, Ornelas-García P, Espinasa L, Rétaux S, Casane D, Genetic identification and reiterated captures suggest that the Astyanax mexicanus El Pachón cavefish population is closed and declining., Zool Res 2023 Jul; 44(4): 701-711.
• 2021
  Guignon V, Breton C, Mariette J, Sabot F, Fumey J, Lefort V, Fiston-Lavier AS, , Ten simple rules for switching from face-to-face to remote conference: An opportunity to estimate the reduction in GHG emissions., PLoS Comput Biol 2021 Oct; 17(10): e1009321.
• 2020
  Policarpo M, Fumey J, Lafargeas P, Naquin D, Thermes C, Naville M, Dechaud C, Volff JN, Cabau C, Klopp C, Møller PR, Bernatchez L, García-Machado E, Rétaux S, Casane D, , Contrasting gene decay in subterranean vertebrates: insights from cavefishes and fossorial mammals., Mol Biol Evol 2020 Sep; (): .
• 2018
  Hassan M, Namasivayam AA, DeBlasio D, Fatima N, Siranosian B, Parra RG, Cuypers B, Shome S, Monzon AM, Fumey J, Rahman F, Reflections on a journey: a retrospective of the ISCB Student Council symposium series, BMC Bioinformatics 2018 Oct;19(Suppl 12):347.
• 2018
  Luis Espinasa, Laurent Legendre, Julien Fumey, Maryline Blin, Sylvie Rétaux, Monika Espinasa, A new cave locality for Astyanax cavefish in Sierra de El Abra, Mexico, Subterranean Biology 26: 39-53.
• 2018
  Fumey J, Hinaux H, Noirot C, Thermes C, Rétaux S, Casane D, Evidence for late Pleistocene origin of Astyanax mexicanus cavefish, BMC Evol. Biol. 2018 Apr;18(1):43.
• 2017
  Fumey J, Wicker-Thomas C, Mutations at the Darkener of Apricot locus modulate pheromone production and sex behavior in Drosophila melanogaster, J. Insect Physiol. 2017 04;98:182-187.
• 2015
  Casane D, Fumey J, Laurenti P, [ENCODE apophenia or a panglossian analysis of the human genome], Med Sci (Paris) 2015 Jun-Jul;31(6-7):680-6.
• 2014
  Hinaux H, Blin M, Fumey J, Legendre L, Heuzé A, Casane D, Rétaux S, Lens defects in Astyanax mexicanus Cavefish: evolution of crystallins and a role for alphaA-crystallin, Dev Neurobiol 2015 May;75(5):505-21.