GUIDE
- Left-click and drag the background to move the graph
- Left-click and drag the nodes to reorganize
- Left-click a node to view first level connections
- Double left-click a node to navigate to its page
- Double left-click the background to zoom in
- Right-click the background to zoom out
sigma.utils.pkg('sigma.canvas.nodes');
sigma.canvas.nodes.image = (function() {
var _cache = {},
_loading = {},
_callbacks = {};
// Return the renderer itself:
var renderer = function(node, context, settings) {
var args = arguments,
prefix = settings('prefix') || '',
size = node[prefix + 'size'],
color = node.color || settings('defaultNodeColor'),
url = node.url;
if (_cache[url]) {
context.save();
// Draw the clipping disc:
context.beginPath();
context.arc(
node[prefix + 'x'],
node[prefix + 'y'],
node[prefix + 'size'],
0,
Math.PI * 2,
true
);
context.closePath();
context.clip();
// Draw the image
context.drawImage(
_cache[url],
node[prefix + 'x'] - size,
node[prefix + 'y'] - size,
2 * size,
2 * size
);
// Quit the "clipping mode":
context.restore();
// Draw the border:
context.beginPath();
context.arc(
node[prefix + 'x'],
node[prefix + 'y'],
node[prefix + 'size'],
0,
Math.PI * 2,
true
);
context.lineWidth = 1;
context.strokeStyle = node.color || settings('defaultNodeColor');
context.stroke();
} else {
sigma.canvas.nodes.image.cache(url);
sigma.canvas.nodes.def.apply(
sigma.canvas.nodes,
args
);
}
};
// Let's add a public method to cache images, to make it possible to
// preload images before the initial rendering:
renderer.cache = function(url, callback) {
if (callback)
_callbacks[url] = callback;
if (_loading[url])
return;
var img = new Image();
img.onload = function() {
_loading[url] = false;
_cache[url] = img;
if (_callbacks[url]) {
_callbacks[url].call(this, img);
delete _callbacks[url];
}
};
_loading[url] = true;
img.src = url;
};
return renderer;
})();
var i,
s,
o,
offset_left = 0.5,
N = 1,
E = 40,
C = 5,
d = 0.5,
cs = [],
g = {
nodes: [],
edges: []
};
if (!sigma.classes.graph.hasMethod('neighbors')){
sigma.classes.graph.addMethod('neighbors', function(nodeId) {
var k,
neighbors = {},
index = this.allNeighborsIndex[nodeId] || {};
for (k in index)
neighbors[k] = this.nodesIndex[k];
return neighbors;
});
}
//adding the central node
g.nodes.push({
id: 982,
label: 'Carine Moigneu',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/02/Moigneu1-150x150.jpg',
x: 0,
y: 0,
size: 30,
color: '#DDDDDD'
});
var biggest_node_size = 0;
N=12
// adding node
var x_node = Math.cos(2 * 0 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 0 * Math.PI / N) * 10;
g.nodes.push({
id: 197801,
label: 'NEWS: Un facteur sanguin impliqué dans la dépression',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/news/un-facteur-sanguin-implique-dans-la-depression/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 982197801,
size: 0.5,
source: 982,
target: 197801,
});
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 3806,
label: 'Pierre-Marie Lledo',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/05/research_pasteur-pierre-marie-lledo-lledo-pierre-marie-6653-copie-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/pierre-marie-lledo/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 1978013806,
size: 0.5,
source: 197801,
target: 3806 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 60986,
label: 'Lida Katsimpardi',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2019/03/research_pasteur-dsc1996-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/lida-katsimpardi/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 19780160986,
size: 0.5,
source: 197801,
target: 60986 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 982) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 197801982,
size: 0.5,
source: 197801,
target: 982 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 179550,
label: 'Soumia Abdellaoui',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2022/04/research_pasteur-soumia-abdellaoui-screenshot-2022-04-19-22-59-17-44-965bbf4d18d205f782c6b8409c5773a42-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/soumia-abdellaoui/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 197801179550,
size: 0.5,
source: 197801,
target: 179550 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 108969,
label: 'Mariana Ramos-Brossier',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/epartner/mariana-ramos-brossier/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 197801108969,
size: 0.5,
source: 197801,
target: 108969 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 71362,
label: 'Aurelie Chiche',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2017/07/research_pasteur-aurelie-small-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/aurelie-chiche/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 19780171362,
size: 0.5,
source: 197801,
target: 71362 });
// adding node
var x_node = Math.cos(2 * 1 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 1 * Math.PI / N) * 10;
g.nodes.push({
id: 183163,
label: 'NEWS: New publication – The neuropeptide VIP potentiates intestinal innate type 2 and type 3 immunity in response to feeding',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/news/new-publication-the-neuropeptide-vip-potentiates-intestinal-innate-type-2-and-type-3-immunity-in-response-to-feeding/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 982183163,
size: 0.5,
source: 982,
target: 183163,
});
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 79465,
label: 'Maud Pascal',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2016/11/research.pasteur.fr_maud-12116-1-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/maud-pascal/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 18316379465,
size: 0.5,
source: 183163,
target: 79465 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 156464,
label: 'Alice Dupin',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2021/03/research_pasteur-alice-dupin-247345641-382313933681837-173136756349216491-n-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/alice-dupin/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 183163156464,
size: 0.5,
source: 183163,
target: 156464 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 83032,
label: 'Ferdinand Jagot-Brunner',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/?post_type=member&p=83032',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 18316383032,
size: 0.5,
source: 183163,
target: 83032 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4492,
label: 'Kurt Sailor',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/09/research.pasteur.fr_kurt-150x150.png',
page_url: 'https://research.pasteur.fr/en/member/kurt-sailor/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 1831634492,
size: 0.5,
source: 183163,
target: 4492 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 8699,
label: 'Sophie Dulauroy',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_dulauroy-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/sophie-dulauroy/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 1831638699,
size: 0.5,
source: 183163,
target: 8699 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 982) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 183163982,
size: 0.5,
source: 183163,
target: 982 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4490,
label: 'Gabriel Lepousez',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/05/research.pasteur.fr_gabriel-lepousez1-150x150.jpeg',
page_url: 'https://research.pasteur.fr/en/member/gabriel-lepousez/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 1831634490,
size: 0.5,
source: 183163,
target: 4490 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 3806) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 1831633806,
size: 0.5,
source: 183163,
target: 3806 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4225,
label: 'Gérard Eberl',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_eberl-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/gerard-eberl/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 1831634225,
size: 0.5,
source: 183163,
target: 4225 });
// adding node
var x_node = Math.cos(2 * 2 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 2 * Math.PI / N) * 10;
g.nodes.push({
id: 179871,
label: 'NEWS: New publication – Bacterial sensing via neuronal Nod2 regulates appetite and body temperature',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/news/new-publication-bacterial-sensing-via-neuronal-nod2-regulates-appetite-and-body-temperature/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 982179871,
size: 0.5,
source: 982,
target: 179871,
});
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 79478,
label: 'Ilana Gabanyi',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/?post_type=member&p=79478',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 17987179478,
size: 0.5,
source: 179871,
target: 79478 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4490) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 1798714490,
size: 0.5,
source: 179871,
target: 4490 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4487,
label: 'Antoine Nissant',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/09/research.pasteur.fr_img_6385-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/antoine-nissant/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 1798714487,
size: 0.5,
source: 179871,
target: 4487 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4496,
label: 'Sébastien Wagner',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/member/sebastien-wagner/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 1798714496,
size: 0.5,
source: 179871,
target: 4496 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 982) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 179871982,
size: 0.5,
source: 179871,
target: 982 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 8699) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 1798718699,
size: 0.5,
source: 179871,
target: 8699 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 8697,
label: 'Bernadette Polomack',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_bernadette-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/bernadette-polomack/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 1798718697,
size: 0.5,
source: 179871,
target: 8697 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4225) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 1798714225,
size: 0.5,
source: 179871,
target: 4225 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 3806) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 1798713806,
size: 0.5,
source: 179871,
target: 3806 });
// adding node
var x_node = Math.cos(2 * 3 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 3 * Math.PI / N) * 10;
g.nodes.push({
id: 6202,
label: 'TEAM: Perception & Action',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_chen_stemcells_6-2013-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/perception-and-action/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 9826202,
size: 0.5,
source: 982,
target: 6202,
});
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
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type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2018/03/research_pasteur-frederique-bouchot-2-150x150.png',
page_url: 'https://research.pasteur.fr/en/member/frederique-bouchot/',
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// adding site
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label: 'Mariana Alonso',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/09/research.pasteur.fr_foto-website-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/mariana-alonso/',
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// adding site
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label: 'Françoise Lazarini-Serandour',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/05/research.pasteur.fr_francoise-lazarini-serandour-150x150.jpg',
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// adding site
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label: 'Chantal Henry',
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url: 'https://research.pasteur.fr/wp-content/uploads/2015/09/research.pasteur.fr_capture-d’écran-2015-09-18-à-18.07.01-150x150.jpg',
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url: 'https://research.pasteur.fr/wp-content/uploads/2022/04/research_pasteur-lea-hamon-lea-hamon-150x150.jpg',
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label: 'Pierre Legrain',
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url: 'https://research.pasteur.fr/wp-content/uploads/2015/05/research_pasteur-pierre-legrain-photo-2016-web-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/pierre-legrain/',
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url: 'https://research.pasteur.fr/wp-content/uploads/2021/03/research_pasteur-alain-letailleur-alain-letailleur-150x150.jpg',
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// adding site
g.nodes.push({
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label: 'Tarek Sharshar',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/11/research.pasteur.fr_img_20151120_154248-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/tarek-sharshar/',
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label: 'Mihye Song',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2023/02/research_pasteur-mihye-song-2022--01-e1695289680675-150x150.jpg',
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// adding site
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// adding site
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// adding node
var x_node = Math.cos(2 * 5 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 5 * Math.PI / N) * 10;
g.nodes.push({
id: 994,
label: 'PROJECT: Rat transgenesis',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/project/rat-transgenesis/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 982994,
size: 0.5,
source: 982,
target: 994,
});
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 867) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 994867,
size: 0.5,
source: 994,
target: 867 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 982) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 994982,
size: 0.5,
source: 994,
target: 982 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 976,
label: 'Gaëlle Chauveau-Le Friec',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/02/chauveau1-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/gaelle-chauveau-le-friec/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 994976,
size: 0.5,
source: 994,
target: 976 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 979,
label: 'Ilta Lafosse',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/?post_type=member&p=979',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 994979,
size: 0.5,
source: 994,
target: 979 });
// adding node
var x_node = Math.cos(2 * 6 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 6 * Math.PI / N) * 10;
g.nodes.push({
id: 877,
label: 'PROJECT: Genome modifications by CRISPR/cas9 system',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/project/modification-on-rat-genome-using-lentiviral-vectors-and-zinc-finger-nucleases/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 982877,
size: 0.5,
source: 982,
target: 877,
});
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 867) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 877867,
size: 0.5,
source: 877,
target: 867 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 982) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 877982,
size: 0.5,
source: 877,
target: 982 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 976) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 877976,
size: 0.5,
source: 877,
target: 976 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 979) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 877979,
size: 0.5,
source: 877,
target: 979 });
// adding node
var x_node = Math.cos(2 * 7 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 7 * Math.PI / N) * 10;
g.nodes.push({
id: 876,
label: 'PROJECT: Gene editing by specific nucleases (zinc finger nucleases-zfns, tale nucleases, CRISPR/Cas9 system)',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/project/gene-editing-by-specific-nucleases-zinc-finger-nucleases-zfns-tale-nucleases-crisprcas9-system/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 982876,
size: 0.5,
source: 982,
target: 876,
});
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 867) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 876867,
size: 0.5,
source: 876,
target: 867 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 982) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 876982,
size: 0.5,
source: 876,
target: 982 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 976) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 876976,
size: 0.5,
source: 876,
target: 976 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 979) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 876979,
size: 0.5,
source: 876,
target: 979 });
// adding node
var x_node = Math.cos(2 * 8 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 8 * Math.PI / N) * 10;
g.nodes.push({
id: 875,
label: 'PROJECT: Microinjection of “External” Mutant ES Cells And Subsequently Germ-Line Chimera Generation',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/project/microinjection-of-external-mutant-es-cells-and-subsequently-germ-line-chimera-generation/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 982875,
size: 0.5,
source: 982,
target: 875,
});
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 867) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 875867,
size: 0.5,
source: 875,
target: 867 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 982) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 875982,
size: 0.5,
source: 875,
target: 982 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 976) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 875976,
size: 0.5,
source: 875,
target: 976 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 979) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 875979,
size: 0.5,
source: 875,
target: 979 });
// adding node
var x_node = Math.cos(2 * 9 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 9 * Math.PI / N) * 10;
g.nodes.push({
id: 874,
label: 'PROJECT: Lentiviral Transgenesis',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/project/lentiviral-transgenesis/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 982874,
size: 0.5,
source: 982,
target: 874,
});
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 867) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 874867,
size: 0.5,
source: 874,
target: 867 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 982) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 874982,
size: 0.5,
source: 874,
target: 982 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 976) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 874976,
size: 0.5,
source: 874,
target: 976 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 979) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 874979,
size: 0.5,
source: 874,
target: 979 });
// adding node
var x_node = Math.cos(2 * 10 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 10 * Math.PI / N) * 10;
g.nodes.push({
id: 872,
label: 'PROJECT: Targeted Transgenesis By Homologous Recombination In Embryonic Stem (ES) Cells',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/project/targeted-transgenesis-by-homologous-recombination-in-embryonic-stem-es-cells/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 982872,
size: 0.5,
source: 982,
target: 872,
});
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 867) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 872867,
size: 0.5,
source: 872,
target: 867 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 982) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 872982,
size: 0.5,
source: 872,
target: 982 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 976) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 872976,
size: 0.5,
source: 872,
target: 976 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 979) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 872979,
size: 0.5,
source: 872,
target: 979 });
// adding node
var x_node = Math.cos(2 * 11 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 11 * Math.PI / N) * 10;
g.nodes.push({
id: 866,
label: 'PROJECT: Classical/Additive Transgenesis by Microinjection',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/project/classicaladditive-transgenesis-by-microinjection/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 982866,
size: 0.5,
source: 982,
target: 866,
});
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 867) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 866867,
size: 0.5,
source: 866,
target: 867 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 982) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 866982,
size: 0.5,
source: 866,
target: 982 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 976) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 866976,
size: 0.5,
source: 866,
target: 976 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 979) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 866979,
size: 0.5,
source: 866,
target: 979 });
var s = new sigma({
//container: document.getElementById('graph-main'),
graph: g,
renderer: {
// IMPORTANT:
// This works only with the canvas renderer, so the
// renderer type set as "canvas" is necessary here.
container: document.getElementById('graph-main'),
type: 'canvas'
},
settings: {
minNodeSize: 6,
maxNodeSize: 35,
mouseWheelEnabled: false,
font: 'Montserrat',
labelThreshold:25,
borderSize:1,
defaultNodeBorderColor: '#999',
sideMargin:25,
}
});
// We first need to save the original colors of our
// nodes and edges, like this:
s.graph.nodes().forEach(function(n) {
n.originalColor = n.color;
});
s.graph.edges().forEach(function(e) {
e.originalColor = e.color;
});
// When a node is clicked, we check for each node
// if it is a neighbor of the clicked one. If not,
// we set its color as grey, and else, it takes its
// original color.
// We do the same for the edges, and we only keep
// edges that have both extremities colored.
s.bind('clickNode', function(e) {
var nodeId = e.data.node.id,
toKeep = s.graph.neighbors(nodeId);
toKeep[nodeId] = e.data.node;
s.graph.nodes().forEach(function(n) {
if (toKeep[n.id])
n.color = '#35a9f5';
else
n.color = '#dddddd';
});
s.graph.edges().forEach(function(e) {
if (toKeep[e.source] && toKeep[e.target])
e.color = '#35a9f5';
else
e.color = '#dddddd';
});
// Since the data has been modified, we need to
// call the refresh method to make the colors
// update effective.
s.refresh();
});
// When the stage is clicked, we just color each
// node and edge with its original color.
s.bind('clickStage', function(e) {
s.graph.nodes().forEach(function(n) {
n.color = n.originalColor;
});
s.graph.edges().forEach(function(e) {
e.color = e.originalColor;
});
// Same as in the previous event:
s.refresh();
});
s.bind("doubleClickNode", function (e) {
$("#canvas-wrap, .sigma-scene, .sigma-mouse").val();
ajax_load_page( e.data.node.page_url );
});
var c = s.camera;
s.bind("rightClickStage", function (e) {
sigma.misc.animation.camera(c, {
ratio: c.ratio * c.settings('zoomingRatio')
}, {
duration: 200
});
});
// Configure the noverlap layout:
var noverlapListener = s.configNoverlap({
nodeMargin: 10,
scaleNodes: 0.3,
gridSize: 1,
easing: 'quadraticInOut', // animation transition function
duration: 4000 // animation duration. Long here for the purposes of this example only
});
// Bind the events:
noverlapListener.bind('start stop interpolate', function(e) {
//console.log(e.type);
if(e.type === 'start') {
//console.time('noverlap');
}
if(e.type === 'interpolate') {
//console.timeEnd('noverlap');
}
});
// Start the layout:
s.startNoverlap();
//s.refresh();
// Initialize the dragNodes plugin:
var dragListener = sigma.plugins.dragNodes(s, s.renderers[0]);
dragListener.bind('startdrag', function(event) {
});
dragListener.bind('drag', function(event) {
});
dragListener.bind('drop', function(event) {
});
dragListener.bind('dragend', function(event) {
});