GUIDE
- Left-click and drag the background to move the graph
- Left-click and drag the nodes to reorganize
- Left-click a node to view first level connections
- Double left-click a node to navigate to its page
- Double left-click the background to zoom in
- Right-click the background to zoom out
sigma.utils.pkg('sigma.canvas.nodes');
sigma.canvas.nodes.image = (function() {
var _cache = {},
_loading = {},
_callbacks = {};
// Return the renderer itself:
var renderer = function(node, context, settings) {
var args = arguments,
prefix = settings('prefix') || '',
size = node[prefix + 'size'],
color = node.color || settings('defaultNodeColor'),
url = node.url;
if (_cache[url]) {
context.save();
// Draw the clipping disc:
context.beginPath();
context.arc(
node[prefix + 'x'],
node[prefix + 'y'],
node[prefix + 'size'],
0,
Math.PI * 2,
true
);
context.closePath();
context.clip();
// Draw the image
context.drawImage(
_cache[url],
node[prefix + 'x'] - size,
node[prefix + 'y'] - size,
2 * size,
2 * size
);
// Quit the "clipping mode":
context.restore();
// Draw the border:
context.beginPath();
context.arc(
node[prefix + 'x'],
node[prefix + 'y'],
node[prefix + 'size'],
0,
Math.PI * 2,
true
);
context.lineWidth = 1;
context.strokeStyle = node.color || settings('defaultNodeColor');
context.stroke();
} else {
sigma.canvas.nodes.image.cache(url);
sigma.canvas.nodes.def.apply(
sigma.canvas.nodes,
args
);
}
};
// Let's add a public method to cache images, to make it possible to
// preload images before the initial rendering:
renderer.cache = function(url, callback) {
if (callback)
_callbacks[url] = callback;
if (_loading[url])
return;
var img = new Image();
img.onload = function() {
_loading[url] = false;
_cache[url] = img;
if (_callbacks[url]) {
_callbacks[url].call(this, img);
delete _callbacks[url];
}
};
_loading[url] = true;
img.src = url;
};
return renderer;
})();
var i,
s,
o,
offset_left = 0.5,
N = 1,
E = 40,
C = 5,
d = 0.5,
cs = [],
g = {
nodes: [],
edges: []
};
if (!sigma.classes.graph.hasMethod('neighbors')){
sigma.classes.graph.addMethod('neighbors', function(nodeId) {
var k,
neighbors = {},
index = this.allNeighborsIndex[nodeId] || {};
for (k in index)
neighbors[k] = this.nodesIndex[k];
return neighbors;
});
}
//adding the central node
g.nodes.push({
id: 976,
label: 'Gaëlle Chauveau-Le Friec',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/02/chauveau1-150x150.jpg',
x: 0,
y: 0,
size: 30,
color: '#DDDDDD'
});
var biggest_node_size = 0;
N=10
// adding node
var x_node = Math.cos(2 * 0 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 0 * Math.PI / N) * 10;
g.nodes.push({
id: 141840,
label: 'PROJECT: CORONABODIES',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/project/coronabodies/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 976141840,
size: 0.5,
source: 976,
target: 141840,
});
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 749,
label: 'Pierre Lafaye',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/01/Lafaye-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/pierre-lafaye/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 141840749,
size: 0.5,
source: 141840,
target: 749 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4883,
label: 'Nicolas Escriou',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/member/nicolas-escriou/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 1418404883,
size: 0.5,
source: 141840,
target: 4883 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4724,
label: 'Félix A. Rey',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/05/research_pasteur-enfelix-a-reyfrfelix-rey-portrait-felixrey-1-150x150.jpeg',
page_url: 'https://research.pasteur.fr/en/member/felix-rey/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 1418404724,
size: 0.5,
source: 141840,
target: 4724 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 2606,
label: 'Stéphane Petres',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2019/11/research_pasteur-img_1660-150x150.jpeg',
page_url: 'https://research.pasteur.fr/en/member/stephane-petres/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 1418402606,
size: 0.5,
source: 141840,
target: 2606 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4051,
label: 'Pierre Charneau',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_fig10-150x150.jpeg',
page_url: 'https://research.pasteur.fr/en/member/pierre-charneau/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 1418404051,
size: 0.5,
source: 141840,
target: 4051 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 99324,
label: 'Gabriel Aymé',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2018/03/research_pasteur-iphone-006-1-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/gabriel-ayme/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 14184099324,
size: 0.5,
source: 141840,
target: 99324 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 976) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 141840976,
size: 0.5,
source: 141840,
target: 976 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 8504,
label: 'Véronique Meriaux',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/?post_type=member&p=8504',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 1418408504,
size: 0.5,
source: 141840,
target: 8504 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 6839,
label: 'François Déjardin',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2018/06/research_pasteur-francois-avril-2015-1-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/francois-dejardin/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 1418406839,
size: 0.5,
source: 141840,
target: 6839 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4929,
label: 'Annette Martin',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_annettemartin-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/annette-martin/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 1418404929,
size: 0.5,
source: 141840,
target: 4929 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 116577,
label: 'Ignacio Fernandez',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2018/11/research_pasteur-img_4481-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/fr-ignacio-fernandez/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 141840116577,
size: 0.5,
source: 141840,
target: 116577 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 56127,
label: 'Pablo Guardado-Calvo',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/10/research_pasteur-pablo-guardado-calvo-1670697779326-150x150.jpeg',
page_url: 'https://research.pasteur.fr/en/member/pablo-guardado-calvo/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 14184056127,
size: 0.5,
source: 141840,
target: 56127 });
// adding node
var x_node = Math.cos(2 * 1 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 1 * Math.PI / N) * 10;
g.nodes.push({
id: 845,
label: 'TEAM: Mouse Genetics Engineering',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/06/research.pasteur.fr_morphogenesis-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/mouse-genetics-engineering/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 976845,
size: 0.5,
source: 976,
target: 845,
});
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 8345,
label: 'Sébastien Chardenoux',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/member/sebastien-chardenoux/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 8458345,
size: 0.5,
source: 845,
target: 8345 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 75885,
label: 'Delphine Cussigh',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2016/09/research.pasteur.fr_p1000480-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/delphine-cussigh/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 84575885,
size: 0.5,
source: 845,
target: 75885 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 164411,
label: 'Yohann Sassier',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/member/yohann-sassier/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 845164411,
size: 0.5,
source: 845,
target: 164411 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 200004,
label: 'Gwendal Kerzerho',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/member/gwendal-kerzerho/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 845200004,
size: 0.5,
source: 845,
target: 200004 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 199054,
label: 'Stéphanie Guillon',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2023/03/research_pasteur-stephanie-guillon-guillon-stephanie-photo-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/stephanie-guillon/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 845199054,
size: 0.5,
source: 845,
target: 199054 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 867,
label: 'Francina Langa Vives',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/02/Francina-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/francina-langa-vives/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 845867,
size: 0.5,
source: 845,
target: 867 });
// adding node
var x_node = Math.cos(2 * 2 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 2 * Math.PI / N) * 10;
g.nodes.push({
id: 748,
label: 'TEAM: Antibody Engineering',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/02/research.pasteur.fr_antibody-engineering-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/antibody-engineering/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 976748,
size: 0.5,
source: 976,
target: 748,
});
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 99324) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 74899324,
size: 0.5,
source: 748,
target: 99324 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 976) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 748976,
size: 0.5,
source: 748,
target: 976 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 189442,
label: 'Hiba Mejri',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/member/hiba-mejri/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 748189442,
size: 0.5,
source: 748,
target: 189442 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 8494,
label: 'Hélène Ribierre',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/05/research_pasteur-helene-ribierre-capture-decran-2016-10-17-a-09.29.35-e1622547901836-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/helene-ribierre/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 7488494,
size: 0.5,
source: 748,
target: 8494 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 198441,
label: 'Jean Randrianaly',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/member/jean-randrianaly/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 748198441,
size: 0.5,
source: 748,
target: 198441 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 8659,
label: 'Catherine Vivier',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_vivier-150x150.jpeg',
page_url: 'https://research.pasteur.fr/en/member/catherine-vivier/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 7488659,
size: 0.5,
source: 748,
target: 8659 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 231914,
label: 'Quitterie Harmel',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/member/quitterie-harmel/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 748231914,
size: 0.5,
source: 748,
target: 231914 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 233391,
label: 'Vanina Alzogaray',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2024/10/research_pasteur-v-alzogaray-v-alzogaray-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/vanina-alzogaray/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 748233391,
size: 0.5,
source: 748,
target: 233391 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 749) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 748749,
size: 0.5,
source: 748,
target: 749 });
// adding node
var x_node = Math.cos(2 * 3 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 3 * Math.PI / N) * 10;
g.nodes.push({
id: 994,
label: 'PROJECT: Rat transgenesis',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/project/rat-transgenesis/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 976994,
size: 0.5,
source: 976,
target: 994,
});
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 867) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 994867,
size: 0.5,
source: 994,
target: 867 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 982,
label: 'Carine Moigneu',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/02/Moigneu1-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/carine-moigneu/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 994982,
size: 0.5,
source: 994,
target: 982 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 976) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 994976,
size: 0.5,
source: 994,
target: 976 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 979,
label: 'Ilta Lafosse',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/?post_type=member&p=979',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 994979,
size: 0.5,
source: 994,
target: 979 });
// adding node
var x_node = Math.cos(2 * 4 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 4 * Math.PI / N) * 10;
g.nodes.push({
id: 877,
label: 'PROJECT: Genome modifications by CRISPR/cas9 system',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/project/modification-on-rat-genome-using-lentiviral-vectors-and-zinc-finger-nucleases/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 976877,
size: 0.5,
source: 976,
target: 877,
});
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 867) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 877867,
size: 0.5,
source: 877,
target: 867 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 982) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 877982,
size: 0.5,
source: 877,
target: 982 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 976) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 877976,
size: 0.5,
source: 877,
target: 976 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 979) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 877979,
size: 0.5,
source: 877,
target: 979 });
// adding node
var x_node = Math.cos(2 * 5 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 5 * Math.PI / N) * 10;
g.nodes.push({
id: 876,
label: 'PROJECT: Gene editing by specific nucleases (zinc finger nucleases-zfns, tale nucleases, CRISPR/Cas9 system)',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/project/gene-editing-by-specific-nucleases-zinc-finger-nucleases-zfns-tale-nucleases-crisprcas9-system/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 976876,
size: 0.5,
source: 976,
target: 876,
});
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 867) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 876867,
size: 0.5,
source: 876,
target: 867 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 982) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 876982,
size: 0.5,
source: 876,
target: 982 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 976) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 876976,
size: 0.5,
source: 876,
target: 976 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 979) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 876979,
size: 0.5,
source: 876,
target: 979 });
// adding node
var x_node = Math.cos(2 * 6 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 6 * Math.PI / N) * 10;
g.nodes.push({
id: 875,
label: 'PROJECT: Microinjection of “External” Mutant ES Cells And Subsequently Germ-Line Chimera Generation',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/project/microinjection-of-external-mutant-es-cells-and-subsequently-germ-line-chimera-generation/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 976875,
size: 0.5,
source: 976,
target: 875,
});
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 867) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 875867,
size: 0.5,
source: 875,
target: 867 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 982) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 875982,
size: 0.5,
source: 875,
target: 982 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 976) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 875976,
size: 0.5,
source: 875,
target: 976 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 979) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 875979,
size: 0.5,
source: 875,
target: 979 });
// adding node
var x_node = Math.cos(2 * 7 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 7 * Math.PI / N) * 10;
g.nodes.push({
id: 874,
label: 'PROJECT: Lentiviral Transgenesis',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/project/lentiviral-transgenesis/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 976874,
size: 0.5,
source: 976,
target: 874,
});
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 867) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 874867,
size: 0.5,
source: 874,
target: 867 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 982) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 874982,
size: 0.5,
source: 874,
target: 982 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 976) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 874976,
size: 0.5,
source: 874,
target: 976 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 979) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 874979,
size: 0.5,
source: 874,
target: 979 });
// adding node
var x_node = Math.cos(2 * 8 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 8 * Math.PI / N) * 10;
g.nodes.push({
id: 872,
label: 'PROJECT: Targeted Transgenesis By Homologous Recombination In Embryonic Stem (ES) Cells',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/project/targeted-transgenesis-by-homologous-recombination-in-embryonic-stem-es-cells/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 976872,
size: 0.5,
source: 976,
target: 872,
});
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 867) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 872867,
size: 0.5,
source: 872,
target: 867 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 982) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 872982,
size: 0.5,
source: 872,
target: 982 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 976) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 872976,
size: 0.5,
source: 872,
target: 976 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 979) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 872979,
size: 0.5,
source: 872,
target: 979 });
// adding node
var x_node = Math.cos(2 * 9 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 9 * Math.PI / N) * 10;
g.nodes.push({
id: 866,
label: 'PROJECT: Classical/Additive Transgenesis by Microinjection',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/project/classicaladditive-transgenesis-by-microinjection/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 976866,
size: 0.5,
source: 976,
target: 866,
});
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 867) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 866867,
size: 0.5,
source: 866,
target: 867 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 982) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 866982,
size: 0.5,
source: 866,
target: 982 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 976) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 866976,
size: 0.5,
source: 866,
target: 976 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 979) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 866979,
size: 0.5,
source: 866,
target: 979 });
var s = new sigma({
//container: document.getElementById('graph-main'),
graph: g,
renderer: {
// IMPORTANT:
// This works only with the canvas renderer, so the
// renderer type set as "canvas" is necessary here.
container: document.getElementById('graph-main'),
type: 'canvas'
},
settings: {
minNodeSize: 6,
maxNodeSize: 35,
mouseWheelEnabled: false,
font: 'Montserrat',
labelThreshold:25,
borderSize:1,
defaultNodeBorderColor: '#999',
sideMargin:25,
}
});
// We first need to save the original colors of our
// nodes and edges, like this:
s.graph.nodes().forEach(function(n) {
n.originalColor = n.color;
});
s.graph.edges().forEach(function(e) {
e.originalColor = e.color;
});
// When a node is clicked, we check for each node
// if it is a neighbor of the clicked one. If not,
// we set its color as grey, and else, it takes its
// original color.
// We do the same for the edges, and we only keep
// edges that have both extremities colored.
s.bind('clickNode', function(e) {
var nodeId = e.data.node.id,
toKeep = s.graph.neighbors(nodeId);
toKeep[nodeId] = e.data.node;
s.graph.nodes().forEach(function(n) {
if (toKeep[n.id])
n.color = '#35a9f5';
else
n.color = '#dddddd';
});
s.graph.edges().forEach(function(e) {
if (toKeep[e.source] && toKeep[e.target])
e.color = '#35a9f5';
else
e.color = '#dddddd';
});
// Since the data has been modified, we need to
// call the refresh method to make the colors
// update effective.
s.refresh();
});
// When the stage is clicked, we just color each
// node and edge with its original color.
s.bind('clickStage', function(e) {
s.graph.nodes().forEach(function(n) {
n.color = n.originalColor;
});
s.graph.edges().forEach(function(e) {
e.color = e.originalColor;
});
// Same as in the previous event:
s.refresh();
});
s.bind("doubleClickNode", function (e) {
$("#canvas-wrap, .sigma-scene, .sigma-mouse").val();
ajax_load_page( e.data.node.page_url );
});
var c = s.camera;
s.bind("rightClickStage", function (e) {
sigma.misc.animation.camera(c, {
ratio: c.ratio * c.settings('zoomingRatio')
}, {
duration: 200
});
});
// Configure the noverlap layout:
var noverlapListener = s.configNoverlap({
nodeMargin: 10,
scaleNodes: 0.3,
gridSize: 1,
easing: 'quadraticInOut', // animation transition function
duration: 4000 // animation duration. Long here for the purposes of this example only
});
// Bind the events:
noverlapListener.bind('start stop interpolate', function(e) {
//console.log(e.type);
if(e.type === 'start') {
//console.time('noverlap');
}
if(e.type === 'interpolate') {
//console.timeEnd('noverlap');
}
});
// Start the layout:
s.startNoverlap();
//s.refresh();
// Initialize the dragNodes plugin:
var dragListener = sigma.plugins.dragNodes(s, s.renderers[0]);
dragListener.bind('startdrag', function(event) {
});
dragListener.bind('drag', function(event) {
});
dragListener.bind('drop', function(event) {
});
dragListener.bind('dragend', function(event) {
});