GUIDE
- Left-click and drag the background to move the graph
- Left-click and drag the nodes to reorganize
- Left-click a node to view first level connections
- Double left-click a node to navigate to its page
- Double left-click the background to zoom in
- Right-click the background to zoom out
// graph team
sigma.utils.pkg('sigma.canvas.nodes');
sigma.canvas.nodes.image = (function() {
var _cache = {},
_loading = {},
_callbacks = {};
// Return the renderer itself:
var renderer = function(node, context, settings) {
var args = arguments,
prefix = settings('prefix') || '',
size = node[prefix + 'size'],
color = node.color || settings('defaultNodeColor'),
url = node.url;
if (_cache[url]) {
context.save();
// Draw the clipping disc:
context.beginPath();
context.arc(
node[prefix + 'x'],
node[prefix + 'y'],
node[prefix + 'size'],
0,
Math.PI * 2,
true
);
context.closePath();
context.clip();
// Draw the image
context.drawImage(
_cache[url],
node[prefix + 'x'] - size,
node[prefix + 'y'] - size,
2 * size,
2 * size
);
// Quit the "clipping mode":
context.restore();
// Draw the border:
context.beginPath();
context.arc(
node[prefix + 'x'],
node[prefix + 'y'],
node[prefix + 'size'],
0,
Math.PI * 2,
true
);
context.lineWidth = 1;
context.strokeStyle = node.color || settings('defaultNodeColor');
context.stroke();
} else {
sigma.canvas.nodes.image.cache(url);
sigma.canvas.nodes.def.apply(
sigma.canvas.nodes,
args
);
}
};
// Let's add a public method to cache images, to make it possible to
// preload images before the initial rendering:
renderer.cache = function(url, callback) {
if (callback)
_callbacks[url] = callback;
if (_loading[url])
return;
var img = new Image();
img.onload = function() {
_loading[url] = false;
_cache[url] = img;
if (_callbacks[url]) {
_callbacks[url].call(this, img);
delete _callbacks[url];
}
};
_loading[url] = true;
img.src = url;
};
return renderer;
})();
var i,
s,
o,
offset_left = 0.5,
N = 1,
E = 40,
C = 5,
d = 0.5,
cs = [],
g = {
nodes: [],
edges: []
};
if (!sigma.classes.graph.hasMethod('neighbors')){
sigma.classes.graph.addMethod('neighbors', function(nodeId) {
var k,
neighbors = {},
index = this.allNeighborsIndex[nodeId] || {};
for (k in index)
neighbors[k] = this.nodesIndex[k];
return neighbors;
});
}
//adding the central node
g.nodes.push({
id: 94346,
label: 'Biodiversity and Epidemiology of Bacterial Pathogens',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/12/research.pasteur.fr_bordetelle-150x150.jpg',
x: 0,
y: 0,
size: 30,
color: '#DDDDDD'
});
N=18
var x_node = Math.cos(2 * 0 * Math.PI / N) * 2;
var y_node = Math.sin(2 * 0 * Math.PI / N) * 2;
var biggest_node_size = 0;
//check if content already exist
x_site = Math.cos(2 * 0 * Math.PI / N) * 2;
y_site = Math.sin(2 * 0 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 144154,
label: 'Christèle Auguste',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2020/07/research_pasteur-christele-auguste-photo-1-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/christele-auguste/',
x: x_site,
y: y_site,
size: 16,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 94346144154,
size: 0.5,
source: 94346,
target: 144154 });
//check if content already exist
x_site = Math.cos(2 * 1 * Math.PI / N) * 2;
y_site = Math.sin(2 * 1 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 105522,
label: 'Julie Toubiana',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2018/03/research_pasteur-img_0068_julie-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/julie-toubiana/',
x: x_site,
y: y_site,
size: 16,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 94346105522,
size: 0.5,
source: 94346,
target: 105522 });
//check if content already exist
x_site = Math.cos(2 * 2 * Math.PI / N) * 2;
y_site = Math.sin(2 * 2 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 4320,
label: 'Edgar Badell-Ocando',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/09/research.pasteur.fr_dsc0028_rev2-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/edgar-badell-ocando/',
x: x_site,
y: y_site,
size: 16,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 943464320,
size: 0.5,
source: 94346,
target: 4320 });
//check if content already exist
x_site = Math.cos(2 * 3 * Math.PI / N) * 2;
y_site = Math.sin(2 * 3 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 105603,
label: 'Carla Rodrigues',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2018/03/research_pasteur-img_9627-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/carla-parada-rodrigues/',
x: x_site,
y: y_site,
size: 16,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 94346105603,
size: 0.5,
source: 94346,
target: 105603 });
//check if content already exist
x_site = Math.cos(2 * 4 * Math.PI / N) * 2;
y_site = Math.sin(2 * 4 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 4321,
label: 'Valérie Bouchez',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2019/06/research_pasteur-valerie_bouchez_ptmmh-1-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/valerie-bouchez/',
x: x_site,
y: y_site,
size: 16,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 943464321,
size: 0.5,
source: 94346,
target: 4321 });
//check if content already exist
x_site = Math.cos(2 * 5 * Math.PI / N) * 2;
y_site = Math.sin(2 * 5 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 8395,
label: 'Virginie Passet',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_passet-150x150.jpeg',
page_url: 'https://research.pasteur.fr/en/member/virginie-passet/',
x: x_site,
y: y_site,
size: 16,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 943468395,
size: 0.5,
source: 94346,
target: 8395 });
//check if content already exist
x_site = Math.cos(2 * 6 * Math.PI / N) * 2;
y_site = Math.sin(2 * 6 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 172503,
label: 'Chiara Crestani',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2021/12/research_pasteur-photochiara-150x150.jpeg',
page_url: 'https://research.pasteur.fr/en/member/chiara-crestani/',
x: x_site,
y: y_site,
size: 16,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 94346172503,
size: 0.5,
source: 94346,
target: 172503 });
//check if content already exist
x_site = Math.cos(2 * 7 * Math.PI / N) * 2;
y_site = Math.sin(2 * 7 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 8259,
label: 'Sylvie Bremont',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_ha48-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/sylvie-bremont/',
x: x_site,
y: y_site,
size: 16,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 943468259,
size: 0.5,
source: 94346,
target: 8259 });
//check if content already exist
x_site = Math.cos(2 * 8 * Math.PI / N) * 2;
y_site = Math.sin(2 * 8 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 8353,
label: 'Marion Barbet',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/member/marion-barbet/',
x: x_site,
y: y_site,
size: 16,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 943468353,
size: 0.5,
source: 94346,
target: 8353 });
//check if content already exist
x_site = Math.cos(2 * 9 * Math.PI / N) * 2;
y_site = Math.sin(2 * 9 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 8256,
label: 'Nathalie Armatys',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/12/research.pasteur.fr_nathalie-armatys1-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/nathalie-armatys/',
x: x_site,
y: y_site,
size: 16,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 943468256,
size: 0.5,
source: 94346,
target: 8256 });
//check if content already exist
x_site = Math.cos(2 * 10 * Math.PI / N) * 2;
y_site = Math.sin(2 * 10 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 8260,
label: 'Annie Landier',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_ha49-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/annie-landier/',
x: x_site,
y: y_site,
size: 16,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 943468260,
size: 0.5,
source: 94346,
target: 8260 });
//check if content already exist
x_site = Math.cos(2 * 11 * Math.PI / N) * 2;
y_site = Math.sin(2 * 11 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 4722,
label: 'Nora Zidane',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/member/nora-zidane/',
x: x_site,
y: y_site,
size: 16,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 943464722,
size: 0.5,
source: 94346,
target: 4722 });
//check if content already exist
x_site = Math.cos(2 * 12 * Math.PI / N) * 2;
y_site = Math.sin(2 * 12 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 107394,
label: 'Mirko Sadi',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2018/05/research_pasteur-img_3892_3_preview-150x150.png',
page_url: 'https://research.pasteur.fr/en/member/mirko-sadi/',
x: x_site,
y: y_site,
size: 16,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 94346107394,
size: 0.5,
source: 94346,
target: 107394 });
//check if content already exist
x_site = Math.cos(2 * 13 * Math.PI / N) * 2;
y_site = Math.sin(2 * 13 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 211799,
label: 'Martin Rethoret-Pasty',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/member/martin-rethoret-pasty/',
x: x_site,
y: y_site,
size: 16,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 94346211799,
size: 0.5,
source: 94346,
target: 211799 });
//check if content already exist
x_site = Math.cos(2 * 14 * Math.PI / N) * 2;
y_site = Math.sin(2 * 14 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 214309,
label: 'José F. Delgado-Blas',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2023/11/research_pasteur-enjose-f-delgado-blasfrjose-delgado-blas-photo-jfdb-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/jose-delgado-blas/',
x: x_site,
y: y_site,
size: 16,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 94346214309,
size: 0.5,
source: 94346,
target: 214309 });
//check if content already exist
x_site = Math.cos(2 * 15 * Math.PI / N) * 2;
y_site = Math.sin(2 * 15 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 167086,
label: 'Solène Cottis',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2021/09/research_pasteur-solene-cottis-solene-cottis-de-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/solene-cottis/',
x: x_site,
y: y_site,
size: 16,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 94346167086,
size: 0.5,
source: 94346,
target: 167086 });
//check if content already exist
x_site = Math.cos(2 * 16 * Math.PI / N) * 2;
y_site = Math.sin(2 * 16 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 235176,
label: 'Armen OVSEPIAN',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2024/12/research_pasteur-enarmen-ovsepianfrarmen-ovsepian-screenshot-2024-09-02-00-06-50-531-com.miui-.gallery-e1733790485852-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/armen-ovsepian/',
x: x_site,
y: y_site,
size: 16,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 94346235176,
size: 0.5,
source: 94346,
target: 235176 });
//check if content already exist
x_site = Math.cos(2 * 17 * Math.PI / N) * 2;
y_site = Math.sin(2 * 17 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 2495,
label: 'Sylvain Brisse',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/03/9c960524567ea360a3_l_2ae2a-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/sylvain-brisse/',
x: x_site,
y: y_site,
size: 16,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 943462495,
size: 0.5,
source: 94346,
target: 2495 });
// update positions
x_node = Math.cos(2 * 0 * Math.PI / N) * 10;
y_node = Math.sin(2 * 0 * Math.PI / N) * 10;
N=28
// adding node
var x_node = Math.cos(2 * 0 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 0 * Math.PI / N) * 10;
g.nodes.push({
id: 228479,
label: 'EVENT: Waterborne disease (Leptospirosis) and Water Surveillance – Virtual Training – GenEpi-BioTrain',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/event/waterborne-disease-leptospirosis-and-water-surveillance-virtual-training-genepi-biotrain/',
size: 24,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 94346228479,
size: 0.5,
source: 94346,
target: 228479 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4571,
label: 'Thierry Lang',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/09/research.pasteur.fr_thierry-new-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/thierry-lang/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 2284794571,
size: 0.5,
source: 228479,
target: 4571 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4321) {
n.size = n.size + 10;
if ( n.size > biggest_node_size ){
biggest_node_size = n.size;
}
}
});
g.nodes.forEach(function(n) {
if (n.id == 94346) {
if ( n.size < biggest_node_size ){
n.size = biggest_node_size;
}
}
});
//link to content
g.edges.push({
id: 2284794321,
size: 0.5,
source: 228479,
target: 4321 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 2495) {
n.size = n.size + 10;
if ( n.size > biggest_node_size ){
biggest_node_size = n.size;
}
}
});
g.nodes.forEach(function(n) {
if (n.id == 94346) {
if ( n.size < biggest_node_size ){
n.size = biggest_node_size;
}
}
});
//link to content
g.edges.push({
id: 2284792495,
size: 0.5,
source: 228479,
target: 2495 });
// adding node
var x_node = Math.cos(2 * 1 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 1 * Math.PI / N) * 10;
g.nodes.push({
id: 218336,
label: 'PROJECT: The GenEpi-BioTrain programme: Interdisciplinary training in genomic epidemiology and public health bioinformatics',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/project/the-genepi-biotrain-programme-interdisciplinary-training-in-genomic-epidemiology-and-public-health-bioinformatics/',
size: 24,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 94346218336,
size: 0.5,
source: 94346,
target: 218336 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4571) {
n.size = n.size + 10;
if ( n.size > biggest_node_size ){
biggest_node_size = n.size;
}
}
});
g.nodes.forEach(function(n) {
if (n.id == 94346) {
if ( n.size < biggest_node_size ){
n.size = biggest_node_size;
}
}
});
//link to content
g.edges.push({
id: 2183364571,
size: 0.5,
source: 218336,
target: 4571 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 167086) {
n.size = n.size + 10;
if ( n.size > biggest_node_size ){
biggest_node_size = n.size;
}
}
});
g.nodes.forEach(function(n) {
if (n.id == 94346) {
if ( n.size < biggest_node_size ){
n.size = biggest_node_size;
}
}
});
//link to content
g.edges.push({
id: 218336167086,
size: 0.5,
source: 218336,
target: 167086 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 2495) {
n.size = n.size + 10;
if ( n.size > biggest_node_size ){
biggest_node_size = n.size;
}
}
});
g.nodes.forEach(function(n) {
if (n.id == 94346) {
if ( n.size < biggest_node_size ){
n.size = biggest_node_size;
}
}
});
//link to content
g.edges.push({
id: 2183362495,
size: 0.5,
source: 218336,
target: 2495 });
// adding node
var x_node = Math.cos(2 * 2 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 2 * Math.PI / N) * 10;
g.nodes.push({
id: 200978,
label: 'EVENT: 1st Klebsiella Epidemiology and Biology Symposium',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2023/04/research_pasteur-1st-klebsiella-international-scientific-symposium-db0129-2-150x150.jpeg',
page_url: 'https://research.pasteur.fr/en/event/1st-klebsiella-international-scientific-symposium/',
size: 24,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 94346200978,
size: 0.5,
source: 94346,
target: 200978 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 2495) {
n.size = n.size + 10;
if ( n.size > biggest_node_size ){
biggest_node_size = n.size;
}
}
});
g.nodes.forEach(function(n) {
if (n.id == 94346) {
if ( n.size < biggest_node_size ){
n.size = biggest_node_size;
}
}
});
//link to content
g.edges.push({
id: 2009782495,
size: 0.5,
source: 200978,
target: 2495 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 172503) {
n.size = n.size + 10;
if ( n.size > biggest_node_size ){
biggest_node_size = n.size;
}
}
});
g.nodes.forEach(function(n) {
if (n.id == 94346) {
if ( n.size < biggest_node_size ){
n.size = biggest_node_size;
}
}
});
//link to content
g.edges.push({
id: 200978172503,
size: 0.5,
source: 200978,
target: 172503 });
// adding node
var x_node = Math.cos(2 * 3 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 3 * Math.PI / N) * 10;
g.nodes.push({
id: 190474,
label: 'EVENT: Genomic taxonomy of bacterial strains and emergence of antibiotic resistance – PhD defense – Mélanie Hennart',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/event/genomic-taxonomy-of-bacterial-strains-and-emergence-of-antibiotic-resistance-phd-defense-melanie-hennart/',
size: 24,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 94346190474,
size: 0.5,
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id: 9434614686,
size: 0.5,
source: 94346,
target: 14686 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 203306,
label: 'Cyril Renassia',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2023/06/research_pasteur-cyril-renassia-photo-cv-2023-cropped-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/cyril-renassia/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 14686203306,
size: 0.5,
source: 14686,
target: 203306 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 3949,
label: 'Philippe Bastin',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/06/research.pasteur.fr_philippe_bastin-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/philippe-bastin/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 146863949,
size: 0.5,
source: 14686,
target: 3949 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4775,
label: 'Carla Saleh',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_ha68-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/carla-saleh/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 146864775,
size: 0.5,
source: 14686,
target: 4775 });
// adding node
var x_node = Math.cos(2 * 27 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 27 * Math.PI / N) * 10;
g.nodes.push({
id: 28,
label: 'DEPARTMENT: Genomes and Genetics',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/06/research.pasteur.fr_genome-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/department/genomes-genetics/',
size: 24,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 9434628,
size: 0.5,
source: 94346,
target: 28 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 81566,
label: 'Selima Messaoudi',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/member/selima-messaoudi/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 2881566,
size: 0.5,
source: 28,
target: 81566 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 232296,
label: 'Odile Cruveiller',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/member/odile-cruveiller/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 28232296,
size: 0.5,
source: 28,
target: 232296 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4418,
label: 'Romain Koszul',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_romain-koszul-sc201-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/romain-koszul/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 284418,
size: 0.5,
source: 28,
target: 4418 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 166168,
label: 'Camille Berthelot',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2021/09/research_pasteur-camille-berthelot-cberthelot2024-2-150x150.jpeg',
page_url: 'https://research.pasteur.fr/en/member/camille-berthelot/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 28166168,
size: 0.5,
source: 28,
target: 166168 });
var s = new sigma({
//container: document.getElementById('graph-main'),
graph: g,
renderer: {
// IMPORTANT:
// This works only with the canvas renderer, so the
// renderer type set as "canvas" is necessary here.
container: document.getElementById('graph-main'),
type: 'canvas'
},
settings: {
minNodeSize: 12,
maxNodeSize: 30,
mouseWheelEnabled: false,
font: 'Montserrat',
labelThreshold:25,
borderSize:1,
defaultNodeBorderColor: '#333',
sideMargin:25,
}
});
// We first need to save the original colors of our
// nodes and edges, like this:
s.graph.nodes().forEach(function(n) {
n.originalColor = n.color;
//console.log(n.id);
//console.log(s.graph.nodes(n.id));
});
s.graph.edges().forEach(function(e) {
e.originalColor = e.color;
});
// When a node is clicked, we check for each node
// if it is a neighbor of the clicked one. If not,
// we set its color as grey, and else, it takes its
// original color.
// We do the same for the edges, and we only keep
// edges that have both extremities colored.
s.bind('clickNode', function(e) {
var nodeId = e.data.node.id,
toKeep = s.graph.neighbors(nodeId);
toKeep[nodeId] = e.data.node;
s.graph.nodes().forEach(function(n) {
if (toKeep[n.id])
n.color = '#35a9f5';
else
n.color = '#dddddd';
});
s.graph.edges().forEach(function(e) {
if (toKeep[e.source] && toKeep[e.target])
e.color = '#35a9f5';
else
e.color = '#dddddd';
});
// Since the data has been modified, we need to
// call the refresh method to make the colors
// update effective.
s.refresh();
});
// When the stage is clicked, we just color each
// node and edge with its original color.
s.bind('clickStage', function(e) {
s.graph.nodes().forEach(function(n) {
n.color = n.originalColor;
});
s.graph.edges().forEach(function(e) {
e.color = e.originalColor;
});
// Same as in the previous event:
s.refresh();
});
s.bind("doubleClickNode", function (e) {
$("#canvas-wrap, .sigma-scene, .sigma-mouse").val();
ajax_load_page( e.data.node.page_url );
});
var c = s.camera;
s.bind("rightClickStage", function (e) {
sigma.misc.animation.camera(c, {
ratio: c.ratio * c.settings('zoomingRatio')
}, {
duration: 200
});
});
// Configure the noverlap layout:
var noverlapListener = s.configNoverlap({
nodeMargin: 10,
scaleNodes: 0.3,
gridSize: 1,
easing: 'quadraticInOut', // animation transition function
duration: 4000 // animation duration. Long here for the purposes of this example only
});
// Bind the events:
noverlapListener.bind('start stop interpolate', function(e) {
//console.log(e.type);
if(e.type === 'start') {
//console.time('noverlap');
}
if(e.type === 'interpolate') {
//console.timeEnd('noverlap');
}
});
// Start the layout:
s.startNoverlap();
//s.refresh();
// Initialize the dragNodes plugin:
var dragListener = sigma.plugins.dragNodes(s, s.renderers[0]);
dragListener.bind('startdrag', function(event) {
});
dragListener.bind('drag', function(event) {
});
dragListener.bind('drop', function(event) {
});
dragListener.bind('dragend', function(event) {
});