GUIDE
- Left-click and drag the background to move the graph
- Left-click and drag the nodes to reorganize
- Left-click a node to view first level connections
- Double left-click a node to navigate to its page
- Double left-click the background to zoom in
- Right-click the background to zoom out
sigma.utils.pkg('sigma.canvas.nodes');
sigma.canvas.nodes.image = (function() {
var _cache = {},
_loading = {},
_callbacks = {};
// Return the renderer itself:
var renderer = function(node, context, settings) {
var args = arguments,
prefix = settings('prefix') || '',
size = node[prefix + 'size'],
color = node.color || settings('defaultNodeColor'),
url = node.url;
if (_cache[url]) {
context.save();
// Draw the clipping disc:
context.beginPath();
context.arc(
node[prefix + 'x'],
node[prefix + 'y'],
node[prefix + 'size'],
0,
Math.PI * 2,
true
);
context.closePath();
context.clip();
// Draw the image
context.drawImage(
_cache[url],
node[prefix + 'x'] - size,
node[prefix + 'y'] - size,
2 * size,
2 * size
);
// Quit the "clipping mode":
context.restore();
// Draw the border:
context.beginPath();
context.arc(
node[prefix + 'x'],
node[prefix + 'y'],
node[prefix + 'size'],
0,
Math.PI * 2,
true
);
context.lineWidth = 1;
context.strokeStyle = node.color || settings('defaultNodeColor');
context.stroke();
} else {
sigma.canvas.nodes.image.cache(url);
sigma.canvas.nodes.def.apply(
sigma.canvas.nodes,
args
);
}
};
// Let's add a public method to cache images, to make it possible to
// preload images before the initial rendering:
renderer.cache = function(url, callback) {
if (callback)
_callbacks[url] = callback;
if (_loading[url])
return;
var img = new Image();
img.onload = function() {
_loading[url] = false;
_cache[url] = img;
if (_callbacks[url]) {
_callbacks[url].call(this, img);
delete _callbacks[url];
}
};
_loading[url] = true;
img.src = url;
};
return renderer;
})();
var i,
s,
o,
offset_left = 0.5,
N = 1,
E = 40,
C = 5,
d = 0.5,
cs = [],
g = {
nodes: [],
edges: []
};
if (!sigma.classes.graph.hasMethod('neighbors')){
sigma.classes.graph.addMethod('neighbors', function(nodeId) {
var k,
neighbors = {},
index = this.allNeighborsIndex[nodeId] || {};
for (k in index)
neighbors[k] = this.nodesIndex[k];
return neighbors;
});
}
//adding the central node
g.nodes.push({
id: 6875,
label: 'Caroline Charlier-Woerther',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/09/research.pasteur.fr_pic_room_esppano_sol1_sol1-5.jpeg',
x: 0,
y: 0,
size: 30,
color: '#DDDDDD'
});
var biggest_node_size = 0;
N=8
// adding node
var x_node = Math.cos(2 * 0 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 0 * Math.PI / N) * 10;
g.nodes.push({
id: 214041,
label: 'NEWS: New publication – Long-term neurological and neurodevelopmental outcome of neonatal listeriosis in France: a prospective, matched, observational cohort study',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/news/new-publication-long-term-neurological-and-neurodevelopmental-outcome-of-neonatal-listeriosis-in-france-a-prospective-matched-observational-cohort-study/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 6875214041,
size: 0.5,
source: 6875,
target: 214041,
});
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 6875) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 2140416875,
size: 0.5,
source: 214041,
target: 6875 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4468,
label: 'Alexandre Leclercq',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/09/research.pasteur.fr_photo12-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/alexandre-leclercq/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 2140414468,
size: 0.5,
source: 214041,
target: 4468 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4470,
label: 'Marc Lecuit',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2017/05/research_pasteur-sans-titre-2-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/marc-lecuit/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 2140414470,
size: 0.5,
source: 214041,
target: 4470 });
// adding node
var x_node = Math.cos(2 * 1 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 1 * Math.PI / N) * 10;
g.nodes.push({
id: 62923,
label: 'NEWS: Listeria: identification of hypervirulent strains with placental and cerebral tropism',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2016/01/research.pasteur.fr_listeriosis-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/news/listeriaidentification-of-hypervirulent-strains-with-placental-and-cerebral-tropism/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 687562923,
size: 0.5,
source: 6875,
target: 62923,
});
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4689,
label: 'Mylène Maury',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2018/06/research_pasteur-portrait-mylenemaury-square1000p-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/mylene-maury/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 629234689,
size: 0.5,
source: 62923,
target: 4689 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 39580,
label: '',
type: 'image',
url: '',
page_url: '',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 6292339580,
size: 0.5,
source: 62923,
target: 39580 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 6875) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 629236875,
size: 0.5,
source: 62923,
target: 6875 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4685,
label: 'Marie Touchon',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_touchon-150x150.jpeg',
page_url: 'https://research.pasteur.fr/en/member/marie-touchon/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 629234685,
size: 0.5,
source: 62923,
target: 4685 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4468) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 629234468,
size: 0.5,
source: 62923,
target: 4468 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 7759,
label: 'Alexis Criscuolo',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_alexiscriscuolo-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/alexis-criscuolo/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 629237759,
size: 0.5,
source: 62923,
target: 7759 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4684,
label: 'Eduardo Rocha',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/06/research.pasteur.fr_eduardo_rocha-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/eduardo-rocha/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 629234684,
size: 0.5,
source: 62923,
target: 4684 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 2495,
label: 'Sylvain Brisse',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/03/9c960524567ea360a3_l_2ae2a-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/sylvain-brisse/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 629232495,
size: 0.5,
source: 62923,
target: 2495 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4470) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 629234470,
size: 0.5,
source: 62923,
target: 4470 });
// adding node
var x_node = Math.cos(2 * 2 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 2 * Math.PI / N) * 10;
g.nodes.push({
id: 27293,
label: 'WHOCC: Listeria (WHO-CC)',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_listeria3-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/whocc/listeria/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 687527293,
size: 0.5,
source: 6875,
target: 27293,
});
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 6875) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 272936875,
size: 0.5,
source: 27293,
target: 6875 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4478,
label: 'Alexandra Moura',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/09/research.pasteur.fr_research.pasteur.fr_photo_serious-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/alexandra-moura/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 272934478,
size: 0.5,
source: 27293,
target: 4478 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 8229,
label: 'Hélène Bracq-Dieye',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/09/research.pasteur.fr_sans-titre3-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/helene-bracq-dieye/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 272938229,
size: 0.5,
source: 27293,
target: 8229 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 8235,
label: 'Pierre Thouvenot',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/09/research.pasteur.fr_sans-titre-copie3-150x150.png',
page_url: 'https://research.pasteur.fr/en/member/pierre-thouvenot/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 272938235,
size: 0.5,
source: 27293,
target: 8235 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 8291,
label: 'Guillaume Vales',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/09/research.pasteur.fr_photo-gv-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/guillaume-vales/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 272938291,
size: 0.5,
source: 27293,
target: 8291 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 8238,
label: 'Nathalie Tessaud Rita',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/09/research.pasteur.fr_ntr2-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/nathalie-tessaud-rita/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 272938238,
size: 0.5,
source: 27293,
target: 8238 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 156104,
label: 'Sofieya Vijayaratnam',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2021/03/research_pasteur-sofieya-vijayaratnam-sofieya-150x150.jpeg',
page_url: 'https://research.pasteur.fr/en/member/sofieya-vijayaratnam/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 27293156104,
size: 0.5,
source: 27293,
target: 156104 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 115588,
label: 'Andrée Diakité',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2019/03/research_pasteur-ad-photo_2367-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/andree-diakite/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 27293115588,
size: 0.5,
source: 27293,
target: 115588 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4470) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 272934470,
size: 0.5,
source: 27293,
target: 4470 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4468) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 272934468,
size: 0.5,
source: 27293,
target: 4468 });
// adding node
var x_node = Math.cos(2 * 3 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 3 * Math.PI / N) * 10;
g.nodes.push({
id: 27228,
label: 'NRC: Listeria',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_listeria-e1441650181339-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/nrc/listeria/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 687527228,
size: 0.5,
source: 6875,
target: 27228,
});
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 6875) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 272286875,
size: 0.5,
source: 27228,
target: 6875 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4478) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 272284478,
size: 0.5,
source: 27228,
target: 4478 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 8229) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 272288229,
size: 0.5,
source: 27228,
target: 8229 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 8235) {
n.size = n.size + 8;
}
});
//link to content
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//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 196815,
label: 'Capucine Jeanton',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2023/02/research_pasteur-capucine-jeanton-img-0537-2-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/capucine-jeanton/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 6181196815,
size: 0.5,
source: 6181,
target: 196815 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 232278,
label: 'Jakob Lichtblau',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/member/jakob-lichtblau/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 6181232278,
size: 0.5,
source: 6181,
target: 232278 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 234255,
label: 'Lucie Paoli',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/member/lucie-paoli/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 6181234255,
size: 0.5,
source: 6181,
target: 234255 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4470) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 61814470,
size: 0.5,
source: 6181,
target: 4470 });
// adding node
var x_node = Math.cos(2 * 6 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 6 * Math.PI / N) * 10;
g.nodes.push({
id: 42948,
label: 'PROJECT: LISTERIAGEN (ANR)',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/09/research.pasteur.fr_course_genetics-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/project/listeriagen/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 687542948,
size: 0.5,
source: 6875,
target: 42948,
});
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4715,
label: 'Lluis Quintana-Murci',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/08/research.pasteur.fr_quintana_photo-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/lluis-quintana-murci/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 429484715,
size: 0.5,
source: 42948,
target: 4715 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 43953,
label: 'Dusan Bogunovic',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/09/research.pasteur.fr_0000072500029706323751-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/epartner/dusan-bogunovic/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 4294843953,
size: 0.5,
source: 42948,
target: 43953 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 6875) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 429486875,
size: 0.5,
source: 42948,
target: 6875 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4470) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 429484470,
size: 0.5,
source: 42948,
target: 4470 });
// adding node
var x_node = Math.cos(2 * 7 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 7 * Math.PI / N) * 10;
g.nodes.push({
id: 42811,
label: 'PROJECT: MONALISA: A Multicenter Observational National Analysis on Listeriosis and Listeria',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/09/research.pasteur.fr_sans-titre8-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/project/monalisa-multicentric-observational-national-analysis-of-listeriosis-and-listeria/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 687542811,
size: 0.5,
source: 6875,
target: 42811,
});
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4468) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 428114468,
size: 0.5,
source: 42811,
target: 4468 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 156104) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 42811156104,
size: 0.5,
source: 42811,
target: 156104 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 6875) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 428116875,
size: 0.5,
source: 42811,
target: 6875 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4470) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 428114470,
size: 0.5,
source: 42811,
target: 4470 });
var s = new sigma({
//container: document.getElementById('graph-main'),
graph: g,
renderer: {
// IMPORTANT:
// This works only with the canvas renderer, so the
// renderer type set as "canvas" is necessary here.
container: document.getElementById('graph-main'),
type: 'canvas'
},
settings: {
minNodeSize: 6,
maxNodeSize: 35,
mouseWheelEnabled: false,
font: 'Montserrat',
labelThreshold:25,
borderSize:1,
defaultNodeBorderColor: '#999',
sideMargin:25,
}
});
// We first need to save the original colors of our
// nodes and edges, like this:
s.graph.nodes().forEach(function(n) {
n.originalColor = n.color;
});
s.graph.edges().forEach(function(e) {
e.originalColor = e.color;
});
// When a node is clicked, we check for each node
// if it is a neighbor of the clicked one. If not,
// we set its color as grey, and else, it takes its
// original color.
// We do the same for the edges, and we only keep
// edges that have both extremities colored.
s.bind('clickNode', function(e) {
var nodeId = e.data.node.id,
toKeep = s.graph.neighbors(nodeId);
toKeep[nodeId] = e.data.node;
s.graph.nodes().forEach(function(n) {
if (toKeep[n.id])
n.color = '#35a9f5';
else
n.color = '#dddddd';
});
s.graph.edges().forEach(function(e) {
if (toKeep[e.source] && toKeep[e.target])
e.color = '#35a9f5';
else
e.color = '#dddddd';
});
// Since the data has been modified, we need to
// call the refresh method to make the colors
// update effective.
s.refresh();
});
// When the stage is clicked, we just color each
// node and edge with its original color.
s.bind('clickStage', function(e) {
s.graph.nodes().forEach(function(n) {
n.color = n.originalColor;
});
s.graph.edges().forEach(function(e) {
e.color = e.originalColor;
});
// Same as in the previous event:
s.refresh();
});
s.bind("doubleClickNode", function (e) {
$("#canvas-wrap, .sigma-scene, .sigma-mouse").val();
ajax_load_page( e.data.node.page_url );
});
var c = s.camera;
s.bind("rightClickStage", function (e) {
sigma.misc.animation.camera(c, {
ratio: c.ratio * c.settings('zoomingRatio')
}, {
duration: 200
});
});
// Configure the noverlap layout:
var noverlapListener = s.configNoverlap({
nodeMargin: 10,
scaleNodes: 0.3,
gridSize: 1,
easing: 'quadraticInOut', // animation transition function
duration: 4000 // animation duration. Long here for the purposes of this example only
});
// Bind the events:
noverlapListener.bind('start stop interpolate', function(e) {
//console.log(e.type);
if(e.type === 'start') {
//console.time('noverlap');
}
if(e.type === 'interpolate') {
//console.timeEnd('noverlap');
}
});
// Start the layout:
s.startNoverlap();
//s.refresh();
// Initialize the dragNodes plugin:
var dragListener = sigma.plugins.dragNodes(s, s.renderers[0]);
dragListener.bind('startdrag', function(event) {
});
dragListener.bind('drag', function(event) {
});
dragListener.bind('drop', function(event) {
});
dragListener.bind('dragend', function(event) {
});