GUIDE
- Left-click and drag the background to move the graph
- Left-click and drag the nodes to reorganize
- Left-click a node to view first level connections
- Double left-click a node to navigate to its page
- Double left-click the background to zoom in
- Right-click the background to zoom out
sigma.utils.pkg('sigma.canvas.nodes');
sigma.canvas.nodes.image = (function() {
var _cache = {},
_loading = {},
_callbacks = {};
// Return the renderer itself:
var renderer = function(node, context, settings) {
var args = arguments,
prefix = settings('prefix') || '',
size = node[prefix + 'size'],
color = node.color || settings('defaultNodeColor'),
url = node.url;
if (_cache[url]) {
context.save();
// Draw the clipping disc:
context.beginPath();
context.arc(
node[prefix + 'x'],
node[prefix + 'y'],
node[prefix + 'size'],
0,
Math.PI * 2,
true
);
context.closePath();
context.clip();
// Draw the image
context.drawImage(
_cache[url],
node[prefix + 'x'] - size,
node[prefix + 'y'] - size,
2 * size,
2 * size
);
// Quit the "clipping mode":
context.restore();
// Draw the border:
context.beginPath();
context.arc(
node[prefix + 'x'],
node[prefix + 'y'],
node[prefix + 'size'],
0,
Math.PI * 2,
true
);
context.lineWidth = 1;
context.strokeStyle = node.color || settings('defaultNodeColor');
context.stroke();
} else {
sigma.canvas.nodes.image.cache(url);
sigma.canvas.nodes.def.apply(
sigma.canvas.nodes,
args
);
}
};
// Let's add a public method to cache images, to make it possible to
// preload images before the initial rendering:
renderer.cache = function(url, callback) {
if (callback)
_callbacks[url] = callback;
if (_loading[url])
return;
var img = new Image();
img.onload = function() {
_loading[url] = false;
_cache[url] = img;
if (_callbacks[url]) {
_callbacks[url].call(this, img);
delete _callbacks[url];
}
};
_loading[url] = true;
img.src = url;
};
return renderer;
})();
var i,
s,
o,
offset_left = 0.5,
N = 1,
E = 40,
C = 5,
d = 0.5,
cs = [],
g = {
nodes: [],
edges: []
};
if (!sigma.classes.graph.hasMethod('neighbors')){
sigma.classes.graph.addMethod('neighbors', function(nodeId) {
var k,
neighbors = {},
index = this.allNeighborsIndex[nodeId] || {};
for (k in index)
neighbors[k] = this.nodesIndex[k];
return neighbors;
});
}
//adding the central node
g.nodes.push({
id: 64135,
label: 'Lucy Glover',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2016/05/research.pasteur.fr_mg_6640_2-5-e1462169014338-150x150.jpg',
x: 0,
y: 0,
size: 30,
color: '#DDDDDD'
});
var biggest_node_size = 0;
N=12
// adding node
var x_node = Math.cos(2 * 0 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 0 * Math.PI / N) * 10;
g.nodes.push({
id: 226306,
label: 'EVENT: DPT Parasites and Insects Vectors Seminar – Dr. Mattie Pawlowic -“Genetic approaches for studying Cryptosporidium biology”',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/event/dpt-parasites-and-insects-vectors-seminar-dr-mattie-pawlowic-genetic-approaches-for-studying-cryptosporidium-biology/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 64135226306,
size: 0.5,
source: 64135,
target: 226306,
});
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 64135) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 22630664135,
size: 0.5,
source: 226306,
target: 64135 });
// adding node
var x_node = Math.cos(2 * 1 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 1 * Math.PI / N) * 10;
g.nodes.push({
id: 208180,
label: 'EVENT: DPT Parasites and Insects Vectors Seminar Thomas OTTO“Bioinformatics tools to explore host-parasite interactions”',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/event/dpt-parasites-and-insects-vectors-seminar-bioinformatics-tools-to-explore-host-parasite-interactions/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 64135208180,
size: 0.5,
source: 64135,
target: 208180,
});
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 64135) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 20818064135,
size: 0.5,
source: 208180,
target: 64135 });
// adding node
var x_node = Math.cos(2 * 2 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 2 * Math.PI / N) * 10;
g.nodes.push({
id: 198286,
label: 'EVENT: DPT Parasites and Insects Vectors Seminar – Virginia HOWICK “Understanding adaptation of P. falciparum to diverse Anopheles vectors”',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/event/dpt-parasites-and-insects-vectors-seminar-virginia-howick-understanding-adaptation-of-p-falciparum-to-diverse-anopheles-vectors/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 64135198286,
size: 0.5,
source: 64135,
target: 198286,
});
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 64135) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 19828664135,
size: 0.5,
source: 198286,
target: 64135 });
// adding node
var x_node = Math.cos(2 * 3 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 3 * Math.PI / N) * 10;
g.nodes.push({
id: 186485,
label: 'EVENT: Symposium “Future in Parasitology 2022”',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/event/symposium-future-in-parasitology-2022/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 64135186485,
size: 0.5,
source: 64135,
target: 186485,
});
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 81566,
label: 'Selima Messaoudi',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/member/selima-messaoudi/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 18648581566,
size: 0.5,
source: 186485,
target: 81566 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 64135) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 18648564135,
size: 0.5,
source: 186485,
target: 64135 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4803,
label: 'Jessica Bryant',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2020/08/research_pasteur-117-0p9a0564-3-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/jessica-bryant/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 1864854803,
size: 0.5,
source: 186485,
target: 4803 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 67565,
label: 'Sebastian Baumgarten',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2016/04/research.pasteur.fr_img_0098-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/sebastian-baumgarten/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 18648567565,
size: 0.5,
source: 186485,
target: 67565 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 86347,
label: 'Mathilde Gendrin',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2020/05/research_pasteur-p1000264-150x150.jpeg',
page_url: 'https://research.pasteur.fr/en/member/mathilde-gendrin/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 18648586347,
size: 0.5,
source: 186485,
target: 86347 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 158222,
label: 'Isabelle Louradour',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2021/04/research_pasteur-isabelle-louradour-photo-pro-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/isabelle-louradour/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 186485158222,
size: 0.5,
source: 186485,
target: 158222 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 120810,
label: 'Pauline Formaglio',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2019/02/research_pasteur-pf_2019-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/fr-pauline-formaglio/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 186485120810,
size: 0.5,
source: 186485,
target: 120810 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 124950,
label: 'Liliana Mancio Silva',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2019/09/research_pasteur-photo-1-5-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/liliana-mancio-silva/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 186485124950,
size: 0.5,
source: 186485,
target: 124950 });
// adding node
var x_node = Math.cos(2 * 4 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 4 * Math.PI / N) * 10;
g.nodes.push({
id: 164902,
label: 'PROJECT: SherPa',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2021/08/research_pasteur-logo-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/project/sherpa/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 64135164902,
size: 0.5,
source: 64135,
target: 164902,
});
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 103714,
label: 'Nuria Sima Teruel',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2018/03/research_pasteur-photo-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/nuria-sima-teruel/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 164902103714,
size: 0.5,
source: 164902,
target: 103714 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 7713,
label: 'Annick Dujeancourt-Henry',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2018/03/research_pasteur-photo-annick.jpg',
page_url: 'https://research.pasteur.fr/en/member/annick-dujeancourt-henry/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 1649027713,
size: 0.5,
source: 164902,
target: 7713 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 140527,
label: 'Jean Marc Tsagmo Ngoune',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2020/03/research_pasteur-pofil-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/jean-marc-tsagmo-ngoune/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 164902140527,
size: 0.5,
source: 164902,
target: 140527 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 3953,
label: 'Brice Rotureau',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/08/research.pasteur.fr_photo-id-rotureau-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/brice-rotureau/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 1649023953,
size: 0.5,
source: 164902,
target: 3953 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 64135) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 16490264135,
size: 0.5,
source: 164902,
target: 64135 });
// adding node
var x_node = Math.cos(2 * 5 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 5 * Math.PI / N) * 10;
g.nodes.push({
id: 155187,
label: 'EVENT: PhD defence:”DNA damage and antigenic variation in Trypanosoma brucei”-Emilia Maclaughin',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/event/thesis-defencedna-damage-and-antigenic-variation-in-trypanosoma-brucei-emilia-maclaughing/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 64135155187,
size: 0.5,
source: 64135,
target: 155187,
});
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 97915,
label: 'Emilia Mclaughlin',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2018/03/research_pasteur-emilia-mclaughlin-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/emilia-mclaughlin/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 15518797915,
size: 0.5,
source: 155187,
target: 97915 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 64135) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 15518764135,
size: 0.5,
source: 155187,
target: 64135 });
// adding node
var x_node = Math.cos(2 * 6 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 6 * Math.PI / N) * 10;
g.nodes.push({
id: 130463,
label: 'EVENT: Immune-mediated control of Toxoplasma in human cells – Eva Frickel',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/event/immune-mediated-control-of-toxoplasma-in-human-cells-eva-frickel/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 64135130463,
size: 0.5,
source: 64135,
target: 130463,
});
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 64135) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 13046364135,
size: 0.5,
source: 130463,
target: 64135 });
// adding node
var x_node = Math.cos(2 * 7 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 7 * Math.PI / N) * 10;
g.nodes.push({
id: 130367,
label: 'PROJECT: SHERLOCK4HAT',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2019/08/research_pasteur-192399-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/project/sherlock4hat/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 64135130367,
size: 0.5,
source: 64135,
target: 130367,
});
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 3953) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 1303673953,
size: 0.5,
source: 130367,
target: 3953 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 3952,
label: 'Christelle Travaillé',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/05/research_pasteur-christelle-travaille-20240607-145817-e1717766347618-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/christelle-travaille/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 1303673952,
size: 0.5,
source: 130367,
target: 3952 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 64135) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 13036764135,
size: 0.5,
source: 130367,
target: 64135 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 7713) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 1303677713,
size: 0.5,
source: 130367,
target: 7713 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 103714) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 130367103714,
size: 0.5,
source: 130367,
target: 103714 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 7878,
label: 'Marie-Noelle Ungeheuer',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_institutpasteur_43070-e1437491181428-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/marie-noelle-ungeheuer/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 1303677878,
size: 0.5,
source: 130367,
target: 7878 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 57470,
label: 'Blanca Liliana Perlaza',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2016/06/research.pasteur.fr_blanca-liliana-perlaza-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/blanca-liliana-perlaza-2/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 13036757470,
size: 0.5,
source: 130367,
target: 57470 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4900,
label: 'Noël Tordo',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_fig58-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/noel-tordo/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 1303674900,
size: 0.5,
source: 130367,
target: 4900 });
// adding node
var x_node = Math.cos(2 * 8 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 8 * Math.PI / N) * 10;
g.nodes.push({
id: 111944,
label: 'EVENT: CRISPR in Parasitology Symposium',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/event/crispr-in-parasitology-symposium/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 64135111944,
size: 0.5,
source: 64135,
target: 111944,
});
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4848,
label: 'Gérald Spaeth',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/05/research_pasteur-gerald-spaeth-portrait-gfs-1-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/gerald-spaeth/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 1119444848,
size: 0.5,
source: 111944,
target: 4848 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 64135) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 11194464135,
size: 0.5,
source: 111944,
target: 64135 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4850,
label: 'Najma Rachidi',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/09/research.pasteur.fr_najma-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/najma-rachidi/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 1119444850,
size: 0.5,
source: 111944,
target: 4850 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4803) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 1119444803,
size: 0.5,
source: 111944,
target: 4803 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 67565) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 11194467565,
size: 0.5,
source: 111944,
target: 67565 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 84023,
label: '',
type: 'image',
url: '',
page_url: '',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 11194484023,
size: 0.5,
source: 111944,
target: 84023 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 81566) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 11194481566,
size: 0.5,
source: 111944,
target: 81566 });
// adding node
var x_node = Math.cos(2 * 9 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 9 * Math.PI / N) * 10;
g.nodes.push({
id: 64141,
label: 'TEAM: Trypanosome Molecular Biology',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2016/02/research.pasteur.fr_institutpasteur_42122-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/trypanosomes-molecular-biology/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 6413564141,
size: 0.5,
source: 64135,
target: 64141,
});
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 7713) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 641417713,
size: 0.5,
source: 64141,
target: 7713 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 88962,
label: 'Christel Ricard-Andraos',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2017/04/research_pasteur-christel-ricard-andraos-photo-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/christel-ricard-andraos/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 6414188962,
size: 0.5,
source: 64141,
target: 88962 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 143437,
label: 'Karinna Rubio',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2020/06/research_pasteur-karinna-rubio-img-1415-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/karinna-rubio/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 64141143437,
size: 0.5,
source: 64141,
target: 143437 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 183204,
label: 'Monica-Gabriela Zavala-Martinez',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/member/monica-gabriela-zavala-martinez/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 64141183204,
size: 0.5,
source: 64141,
target: 183204 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 149068,
label: 'Fernando Batista',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/member/fernando-batista/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 64141149068,
size: 0.5,
source: 64141,
target: 149068 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 64135) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 6414164135,
size: 0.5,
source: 64141,
target: 64135 });
// adding node
var x_node = Math.cos(2 * 10 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 10 * Math.PI / N) * 10;
g.nodes.push({
id: 14686,
label: 'PROGRAM_PROJECT: LabEx IBEID – Integrative Biology of Emerging Infectious Diseases',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_labex-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/program_project/integrative-biology-of-emerging-infectious-diseases/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 6413514686,
size: 0.5,
source: 64135,
target: 14686,
});
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 203306,
label: 'Cyril Renassia',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2023/06/research_pasteur-cyril-renassia-photo-cv-2023-cropped-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/cyril-renassia/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 14686203306,
size: 0.5,
source: 14686,
target: 203306 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 3949,
label: 'Philippe Bastin',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/06/research.pasteur.fr_philippe_bastin-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/philippe-bastin/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 146863949,
size: 0.5,
source: 14686,
target: 3949 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4775,
label: 'Carla Saleh',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_ha68-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/carla-saleh/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 146864775,
size: 0.5,
source: 14686,
target: 4775 });
// adding node
var x_node = Math.cos(2 * 11 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 11 * Math.PI / N) * 10;
g.nodes.push({
id: 30,
label: 'DEPARTMENT: Parasites and Insect Vectors',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/06/research.pasteur.fr_parasites-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/department/parasites-and-insect-vectors/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 6413530,
size: 0.5,
source: 64135,
target: 30,
});
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 81566) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 3081566,
size: 0.5,
source: 30,
target: 81566 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 64135) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 3064135,
size: 0.5,
source: 30,
target: 64135 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4058,
label: 'Chetan Chitnis',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/09/research.pasteur.fr_chitnis_photo-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/chetan-chitnis/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 304058,
size: 0.5,
source: 30,
target: 4058 });
var s = new sigma({
//container: document.getElementById('graph-main'),
graph: g,
renderer: {
// IMPORTANT:
// This works only with the canvas renderer, so the
// renderer type set as "canvas" is necessary here.
container: document.getElementById('graph-main'),
type: 'canvas'
},
settings: {
minNodeSize: 6,
maxNodeSize: 35,
mouseWheelEnabled: false,
font: 'Montserrat',
labelThreshold:25,
borderSize:1,
defaultNodeBorderColor: '#999',
sideMargin:25,
}
});
// We first need to save the original colors of our
// nodes and edges, like this:
s.graph.nodes().forEach(function(n) {
n.originalColor = n.color;
});
s.graph.edges().forEach(function(e) {
e.originalColor = e.color;
});
// When a node is clicked, we check for each node
// if it is a neighbor of the clicked one. If not,
// we set its color as grey, and else, it takes its
// original color.
// We do the same for the edges, and we only keep
// edges that have both extremities colored.
s.bind('clickNode', function(e) {
var nodeId = e.data.node.id,
toKeep = s.graph.neighbors(nodeId);
toKeep[nodeId] = e.data.node;
s.graph.nodes().forEach(function(n) {
if (toKeep[n.id])
n.color = '#35a9f5';
else
n.color = '#dddddd';
});
s.graph.edges().forEach(function(e) {
if (toKeep[e.source] && toKeep[e.target])
e.color = '#35a9f5';
else
e.color = '#dddddd';
});
// Since the data has been modified, we need to
// call the refresh method to make the colors
// update effective.
s.refresh();
});
// When the stage is clicked, we just color each
// node and edge with its original color.
s.bind('clickStage', function(e) {
s.graph.nodes().forEach(function(n) {
n.color = n.originalColor;
});
s.graph.edges().forEach(function(e) {
e.color = e.originalColor;
});
// Same as in the previous event:
s.refresh();
});
s.bind("doubleClickNode", function (e) {
$("#canvas-wrap, .sigma-scene, .sigma-mouse").val();
ajax_load_page( e.data.node.page_url );
});
var c = s.camera;
s.bind("rightClickStage", function (e) {
sigma.misc.animation.camera(c, {
ratio: c.ratio * c.settings('zoomingRatio')
}, {
duration: 200
});
});
// Configure the noverlap layout:
var noverlapListener = s.configNoverlap({
nodeMargin: 10,
scaleNodes: 0.3,
gridSize: 1,
easing: 'quadraticInOut', // animation transition function
duration: 4000 // animation duration. Long here for the purposes of this example only
});
// Bind the events:
noverlapListener.bind('start stop interpolate', function(e) {
//console.log(e.type);
if(e.type === 'start') {
//console.time('noverlap');
}
if(e.type === 'interpolate') {
//console.timeEnd('noverlap');
}
});
// Start the layout:
s.startNoverlap();
//s.refresh();
// Initialize the dragNodes plugin:
var dragListener = sigma.plugins.dragNodes(s, s.renderers[0]);
dragListener.bind('startdrag', function(event) {
});
dragListener.bind('drag', function(event) {
});
dragListener.bind('drop', function(event) {
});
dragListener.bind('dragend', function(event) {
});