GUIDE
- Left-click and drag the background to move the graph
- Left-click and drag the nodes to reorganize
- Left-click a node to view first level connections
- Double left-click a node to navigate to its page
- Double left-click the background to zoom in
- Right-click the background to zoom out
// graph team
sigma.utils.pkg('sigma.canvas.nodes');
sigma.canvas.nodes.image = (function() {
var _cache = {},
_loading = {},
_callbacks = {};
// Return the renderer itself:
var renderer = function(node, context, settings) {
var args = arguments,
prefix = settings('prefix') || '',
size = node[prefix + 'size'],
color = node.color || settings('defaultNodeColor'),
url = node.url;
if (_cache[url]) {
context.save();
// Draw the clipping disc:
context.beginPath();
context.arc(
node[prefix + 'x'],
node[prefix + 'y'],
node[prefix + 'size'],
0,
Math.PI * 2,
true
);
context.closePath();
context.clip();
// Draw the image
context.drawImage(
_cache[url],
node[prefix + 'x'] - size,
node[prefix + 'y'] - size,
2 * size,
2 * size
);
// Quit the "clipping mode":
context.restore();
// Draw the border:
context.beginPath();
context.arc(
node[prefix + 'x'],
node[prefix + 'y'],
node[prefix + 'size'],
0,
Math.PI * 2,
true
);
context.lineWidth = 1;
context.strokeStyle = node.color || settings('defaultNodeColor');
context.stroke();
} else {
sigma.canvas.nodes.image.cache(url);
sigma.canvas.nodes.def.apply(
sigma.canvas.nodes,
args
);
}
};
// Let's add a public method to cache images, to make it possible to
// preload images before the initial rendering:
renderer.cache = function(url, callback) {
if (callback)
_callbacks[url] = callback;
if (_loading[url])
return;
var img = new Image();
img.onload = function() {
_loading[url] = false;
_cache[url] = img;
if (_callbacks[url]) {
_callbacks[url].call(this, img);
delete _callbacks[url];
}
};
_loading[url] = true;
img.src = url;
};
return renderer;
})();
var i,
s,
o,
offset_left = 0.5,
N = 1,
E = 40,
C = 5,
d = 0.5,
cs = [],
g = {
nodes: [],
edges: []
};
if (!sigma.classes.graph.hasMethod('neighbors')){
sigma.classes.graph.addMethod('neighbors', function(nodeId) {
var k,
neighbors = {},
index = this.allNeighborsIndex[nodeId] || {};
for (k in index)
neighbors[k] = this.nodesIndex[k];
return neighbors;
});
}
//adding the central node
g.nodes.push({
id: 62878,
label: 'Bioorganic chemistry of nucleic acids',
type: 'image',
url: '',
x: 0,
y: 0,
size: 30,
color: '#DDDDDD'
});
N=13
var x_node = Math.cos(2 * 0 * Math.PI / N) * 2;
var y_node = Math.sin(2 * 0 * Math.PI / N) * 2;
var biggest_node_size = 0;
//check if content already exist
x_site = Math.cos(2 * 0 * Math.PI / N) * 2;
y_site = Math.sin(2 * 0 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 8302,
label: 'Marie-Ange Garnier',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_img_47534-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/marie-ange-garnier/',
x: x_site,
y: y_site,
size: 16,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 628788302,
size: 0.5,
source: 62878,
target: 8302 });
//check if content already exist
x_site = Math.cos(2 * 1 * Math.PI / N) * 2;
y_site = Math.sin(2 * 1 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 75573,
label: 'Fabienne Levi-Acobas',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/member/fabienne-levi-acobas/',
x: x_site,
y: y_site,
size: 16,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 6287875573,
size: 0.5,
source: 62878,
target: 75573 });
//check if content already exist
x_site = Math.cos(2 * 2 * Math.PI / N) * 2;
y_site = Math.sin(2 * 2 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 155472,
label: 'Alix Bouvier-Müller',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2021/03/research_pasteur-alix-bouvier-muller-alix-bouvier-mueller-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/alix-bouvier-muller/',
x: x_site,
y: y_site,
size: 16,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 62878155472,
size: 0.5,
source: 62878,
target: 155472 });
//check if content already exist
x_site = Math.cos(2 * 3 * Math.PI / N) * 2;
y_site = Math.sin(2 * 3 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 177454,
label: 'Nazarii Sabat',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2022/03/research_pasteur-nazarii-sabat-photo-site-4-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/nazarii-sabat/',
x: x_site,
y: y_site,
size: 16,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 62878177454,
size: 0.5,
source: 62878,
target: 177454 });
//check if content already exist
x_site = Math.cos(2 * 4 * Math.PI / N) * 2;
y_site = Math.sin(2 * 4 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 182494,
label: 'Camélia Kitoun',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/member/harley-betts/',
x: x_site,
y: y_site,
size: 16,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 62878182494,
size: 0.5,
source: 62878,
target: 182494 });
//check if content already exist
x_site = Math.cos(2 * 5 * Math.PI / N) * 2;
y_site = Math.sin(2 * 5 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 214687,
label: 'Pierre Nicolas Bizat',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/member/pierre-nicolas-bizat/',
x: x_site,
y: y_site,
size: 16,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 62878214687,
size: 0.5,
source: 62878,
target: 214687 });
//check if content already exist
x_site = Math.cos(2 * 6 * Math.PI / N) * 2;
y_site = Math.sin(2 * 6 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 214697,
label: 'Usman Akhtar',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/member/usman-akhtar/',
x: x_site,
y: y_site,
size: 16,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 62878214697,
size: 0.5,
source: 62878,
target: 214697 });
//check if content already exist
x_site = Math.cos(2 * 7 * Math.PI / N) * 2;
y_site = Math.sin(2 * 7 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 216820,
label: 'Maria Dalla-Pozza',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/member/maria-dalla-pozza/',
x: x_site,
y: y_site,
size: 16,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 62878216820,
size: 0.5,
source: 62878,
target: 216820 });
//check if content already exist
x_site = Math.cos(2 * 8 * Math.PI / N) * 2;
y_site = Math.sin(2 * 8 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 225074,
label: 'Yan BADJI',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/member/yan-badji/',
x: x_site,
y: y_site,
size: 16,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 62878225074,
size: 0.5,
source: 62878,
target: 225074 });
//check if content already exist
x_site = Math.cos(2 * 9 * Math.PI / N) * 2;
y_site = Math.sin(2 * 9 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 226191,
label: 'Alexandre QUELHAS',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/member/alexandre-quelhas/',
x: x_site,
y: y_site,
size: 16,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 62878226191,
size: 0.5,
source: 62878,
target: 226191 });
//check if content already exist
x_site = Math.cos(2 * 10 * Math.PI / N) * 2;
y_site = Math.sin(2 * 10 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 232311,
label: 'Sophie Battedou',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/member/sophie-battedou/',
x: x_site,
y: y_site,
size: 16,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 62878232311,
size: 0.5,
source: 62878,
target: 232311 });
//check if content already exist
x_site = Math.cos(2 * 11 * Math.PI / N) * 2;
y_site = Math.sin(2 * 11 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 232316,
label: 'Amina Tahir',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/member/amina-tahir/',
x: x_site,
y: y_site,
size: 16,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 62878232316,
size: 0.5,
source: 62878,
target: 232316 });
//check if content already exist
x_site = Math.cos(2 * 12 * Math.PI / N) * 2;
y_site = Math.sin(2 * 12 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 62876,
label: 'Marcel Hollenstein',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2016/01/research.pasteur.fr_thrashmanlessthrash-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/marcel-hollenstein/',
x: x_site,
y: y_site,
size: 16,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 6287862876,
size: 0.5,
source: 62878,
target: 62876 });
// update positions
x_node = Math.cos(2 * 0 * Math.PI / N) * 10;
y_node = Math.sin(2 * 0 * Math.PI / N) * 10;
N=19
// adding node
var x_node = Math.cos(2 * 0 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 0 * Math.PI / N) * 10;
g.nodes.push({
id: 186667,
label: 'PROJECT: Energir: Energy dependent iron import by Gram-negative bacteria',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/project/fr-energir-energy-dependent-iron-import-by-gram-negative-bacteria/',
size: 24,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 62878186667,
size: 0.5,
source: 62878,
target: 186667 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4623,
label: 'Michael Nilges',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2017/02/research.pasteur.fr_dsc3513-copy-1-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/michael-nilges/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 1866674623,
size: 0.5,
source: 186667,
target: 4623 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4046,
label: 'Sébastien Brier',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2019/11/research_pasteur-dsc_1803_hd.jpg-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/sebastien-brier/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 1866674046,
size: 0.5,
source: 186667,
target: 4046 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 62876) {
n.size = n.size + 10;
if ( n.size > biggest_node_size ){
biggest_node_size = n.size;
}
}
});
g.nodes.forEach(function(n) {
if (n.id == 62878) {
if ( n.size < biggest_node_size ){
n.size = biggest_node_size;
}
}
});
//link to content
g.edges.push({
id: 18666762876,
size: 0.5,
source: 186667,
target: 62876 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4611,
label: 'Benjamin Bardiaux',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_bardiaux-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/benjamin-bardiaux/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 1866674611,
size: 0.5,
source: 186667,
target: 4611 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 117296,
label: 'Maylis Lejeune',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2018/11/research_pasteur-maylis_2017-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/maylis-lejeune/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 186667117296,
size: 0.5,
source: 186667,
target: 117296 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 70499,
label: 'Olivier Sperandio',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2016/05/research.pasteur.fr_sperandio-id-photo-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/olivier-sperandio/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 18666770499,
size: 0.5,
source: 186667,
target: 70499 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4616,
label: 'Guillaume Bouvier',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2017/03/research.pasteur.fr_profile_1-1-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/guillaume-bouvier/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 1866674616,
size: 0.5,
source: 186667,
target: 4616 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 75573) {
n.size = n.size + 10;
if ( n.size > biggest_node_size ){
biggest_node_size = n.size;
}
}
});
g.nodes.forEach(function(n) {
if (n.id == 62878) {
if ( n.size < biggest_node_size ){
n.size = biggest_node_size;
}
}
});
//link to content
g.edges.push({
id: 18666775573,
size: 0.5,
source: 186667,
target: 75573 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4624,
label: 'Riccardo Pellarin',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/09/research.pasteur.fr_myself1-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/riccardo-pellarin/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 1866674624,
size: 0.5,
source: 186667,
target: 4624 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 157457,
label: 'Maximilian Zinke',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/member/maximilian-zinke/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 186667157457,
size: 0.5,
source: 186667,
target: 157457 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4148,
label: 'Nadia Izadi-Pruneyre',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/08/research.pasteur.fr_photo_site-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/nadia-izadi-pruneyre/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 1866674148,
size: 0.5,
source: 186667,
target: 4148 });
// adding node
var x_node = Math.cos(2 * 1 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 1 * Math.PI / N) * 10;
g.nodes.push({
id: 160998,
label: 'PROGRAM_PROJECT: Drug Discovery & Screening at Institut Pasteur',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/program_project/drug-discovery-screening-at-institut-pasteur/',
size: 24,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 62878160998,
size: 0.5,
source: 62878,
target: 160998 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 161202,
label: 'Emilie Boutet',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2021/06/research_pasteur-emilie-boutet-essai-jpeg-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/emilie-boutet/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 160998161202,
size: 0.5,
source: 160998,
target: 161202 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
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y_site = y_node + ((Math.random() * 2)-1) + offset_left;
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// adding site
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label: 'Fabrice Agou',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/06/research.pasteur.fr_image010-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/fabrice-agou/',
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y: y_site,
size: 10,
color: '#DDDDDD'
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// adding site
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label: 'Nienke Buddelmeijer',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/10/research.pasteur.fr_nienke3a-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/nienke-buddelmeijer/',
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y: y_site,
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color: '#DDDDDD'
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// adding site
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label: 'Iuliana Ene',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2021/01/research_pasteur-iuliana-ene-ene-iuliana-1-copy-scaled-e1612802810122-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/iuliana-ene/',
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//check if content already exist
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// adding site
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label: 'Nadia Naffakh',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/08/research.pasteur.fr_photo_web1-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/nadia-naffakh/',
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// adding site
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label: 'Eric Prina',
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url: 'https://research.pasteur.fr/wp-content/uploads/2015/09/research.pasteur.fr_eric-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/eric-prina/',
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// adding site
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label: 'Ludovic Sauguet',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/05/research_pasteur-ludovic-sauguet-photo-sauguet-ludovic-scaled-e1650635785861-150x150.jpg',
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// adding site
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label: 'Hélène Strick-Marchand',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_helena-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/helene-strick-marchand/',
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// adding site
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label: 'Christophe Zimmer',
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url: 'https://research.pasteur.fr/wp-content/uploads/2015/05/research_pasteur-christophe-zimmer-chz-photo-resized-bw-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/christophe-zimmer/',
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// adding site
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label: 'Jean-Pierre Vartanian',
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// adding site
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label: 'Han Li',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/06/research.pasteur.fr_han_li_small-150x150.jpg',
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// adding site
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type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_marc2-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/marc-delarue/',
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// adding site
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// adding site
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label: 'Laurent Dacheux',
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y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2017/02/research_pasteur-enantimicrobial-resistance-frresistance-aux-agents-antimicrobiens-institutpasteur-34753-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/program_project/antimicrobial-resistance/',
size: 24,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 6287880943,
size: 0.5,
source: 62878,
target: 80943 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 161202) {
n.size = n.size + 10;
if ( n.size > biggest_node_size ){
biggest_node_size = n.size;
}
}
});
g.nodes.forEach(function(n) {
if (n.id == 62878) {
if ( n.size < biggest_node_size ){
n.size = biggest_node_size;
}
}
});
//link to content
g.edges.push({
id: 80943161202,
size: 0.5,
source: 80943,
target: 161202 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 95915) {
n.size = n.size + 10;
if ( n.size > biggest_node_size ){
biggest_node_size = n.size;
}
}
});
g.nodes.forEach(function(n) {
if (n.id == 62878) {
if ( n.size < biggest_node_size ){
n.size = biggest_node_size;
}
}
});
//link to content
g.edges.push({
id: 8094395915,
size: 0.5,
source: 80943,
target: 95915 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 7209,
label: 'Philippe Glaser',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_ha41-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/philippe-glaser/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 809437209,
size: 0.5,
source: 80943,
target: 7209 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 7850) {
n.size = n.size + 10;
if ( n.size > biggest_node_size ){
biggest_node_size = n.size;
}
}
});
g.nodes.forEach(function(n) {
if (n.id == 62878) {
if ( n.size < biggest_node_size ){
n.size = biggest_node_size;
}
}
});
//link to content
g.edges.push({
id: 809437850,
size: 0.5,
source: 80943,
target: 7850 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4255,
label: 'Anna-Bella Failloux',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/12/research.pasteur.fr_ab-failloux3-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/anna-bella-failloux/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 809434255,
size: 0.5,
source: 80943,
target: 4255 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4447,
label: 'Thierry Fontaine',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2019/07/research_pasteur-20190614_185922_crop-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/thierry-fontaine/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 809434447,
size: 0.5,
source: 80943,
target: 4447 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4541,
label: 'Didier Mazel',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/05/research_pasteur-didier-mazel-img-6478-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/didier-mazel/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 809434541,
size: 0.5,
source: 80943,
target: 4541 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 95085,
label: 'Didier Ménard',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2017/12/research_pasteur-92a3510-5-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/didier-menard/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 8094395085,
size: 0.5,
source: 80943,
target: 95085 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 8485,
label: 'Lulla Opatowski',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2017/01/research.pasteur.fr_photolulla4-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/lulla-opatowski/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 809438485,
size: 0.5,
source: 80943,
target: 8485 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4724,
label: 'Félix A. Rey',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/05/research_pasteur-enfelix-a-reyfrfelix-rey-portrait-felixrey-1-150x150.jpeg',
page_url: 'https://research.pasteur.fr/en/member/felix-rey/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 809434724,
size: 0.5,
source: 80943,
target: 4724 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 81199,
label: 'Kathleen Victoir',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/member/kathleen-victoir/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 8094381199,
size: 0.5,
source: 80943,
target: 81199 });
// adding node
var x_node = Math.cos(2 * 16 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 16 * Math.PI / N) * 10;
g.nodes.push({
id: 28,
label: 'DEPARTMENT: Genomes and Genetics',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/06/research.pasteur.fr_genome-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/department/genomes-genetics/',
size: 24,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 6287828,
size: 0.5,
source: 62878,
target: 28 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 81566,
label: 'Selima Messaoudi',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/member/selima-messaoudi/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 2881566,
size: 0.5,
source: 28,
target: 81566 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 232296,
label: 'Odile Cruveiller',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/member/odile-cruveiller/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 28232296,
size: 0.5,
source: 28,
target: 232296 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4418,
label: 'Romain Koszul',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_romain-koszul-sc201-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/romain-koszul/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 284418,
size: 0.5,
source: 28,
target: 4418 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 166168,
label: 'Camille Berthelot',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2021/09/research_pasteur-camille-berthelot-cberthelot2024-2-150x150.jpeg',
page_url: 'https://research.pasteur.fr/en/member/camille-berthelot/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 28166168,
size: 0.5,
source: 28,
target: 166168 });
// adding node
var x_node = Math.cos(2 * 17 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 17 * Math.PI / N) * 10;
g.nodes.push({
id: 24,
label: 'DEPARTMENT: Structural Biology and Chemistry',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/06/research.pasteur.fr_electron-mic-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/department/structural-biology-chemistry/',
size: 24,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 6287824,
size: 0.5,
source: 62878,
target: 24 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 7039,
label: 'Marie-Laure Goupil',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/09/research.pasteur.fr_photo-marie-laure-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/marie-laure-goupil/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 247039,
size: 0.5,
source: 24,
target: 7039 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 95915) {
n.size = n.size + 10;
if ( n.size > biggest_node_size ){
biggest_node_size = n.size;
}
}
});
g.nodes.forEach(function(n) {
if (n.id == 62878) {
if ( n.size < biggest_node_size ){
n.size = biggest_node_size;
}
}
});
//link to content
g.edges.push({
id: 2495915,
size: 0.5,
source: 24,
target: 95915 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4148) {
n.size = n.size + 10;
if ( n.size > biggest_node_size ){
biggest_node_size = n.size;
}
}
});
g.nodes.forEach(function(n) {
if (n.id == 62878) {
if ( n.size < biggest_node_size ){
n.size = biggest_node_size;
}
}
});
//link to content
g.edges.push({
id: 244148,
size: 0.5,
source: 24,
target: 4148 });
// adding node
var x_node = Math.cos(2 * 18 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 18 * Math.PI / N) * 10;
g.nodes.push({
id: 118840,
label: 'TEAM: UMR3523 – Chemistry for Life Sciences (Chem4Life)',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/team/umr3523-chemistry-for-life-sciences/',
size: 24,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 62878118840,
size: 0.5,
source: 62878,
target: 118840 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 95915) {
n.size = n.size + 10;
if ( n.size > biggest_node_size ){
biggest_node_size = n.size;
}
}
});
g.nodes.forEach(function(n) {
if (n.id == 62878) {
if ( n.size < biggest_node_size ){
n.size = biggest_node_size;
}
}
});
//link to content
g.edges.push({
id: 11884095915,
size: 0.5,
source: 118840,
target: 95915 });
var s = new sigma({
//container: document.getElementById('graph-main'),
graph: g,
renderer: {
// IMPORTANT:
// This works only with the canvas renderer, so the
// renderer type set as "canvas" is necessary here.
container: document.getElementById('graph-main'),
type: 'canvas'
},
settings: {
minNodeSize: 12,
maxNodeSize: 30,
mouseWheelEnabled: false,
font: 'Montserrat',
labelThreshold:25,
borderSize:1,
defaultNodeBorderColor: '#333',
sideMargin:25,
}
});
// We first need to save the original colors of our
// nodes and edges, like this:
s.graph.nodes().forEach(function(n) {
n.originalColor = n.color;
//console.log(n.id);
//console.log(s.graph.nodes(n.id));
});
s.graph.edges().forEach(function(e) {
e.originalColor = e.color;
});
// When a node is clicked, we check for each node
// if it is a neighbor of the clicked one. If not,
// we set its color as grey, and else, it takes its
// original color.
// We do the same for the edges, and we only keep
// edges that have both extremities colored.
s.bind('clickNode', function(e) {
var nodeId = e.data.node.id,
toKeep = s.graph.neighbors(nodeId);
toKeep[nodeId] = e.data.node;
s.graph.nodes().forEach(function(n) {
if (toKeep[n.id])
n.color = '#35a9f5';
else
n.color = '#dddddd';
});
s.graph.edges().forEach(function(e) {
if (toKeep[e.source] && toKeep[e.target])
e.color = '#35a9f5';
else
e.color = '#dddddd';
});
// Since the data has been modified, we need to
// call the refresh method to make the colors
// update effective.
s.refresh();
});
// When the stage is clicked, we just color each
// node and edge with its original color.
s.bind('clickStage', function(e) {
s.graph.nodes().forEach(function(n) {
n.color = n.originalColor;
});
s.graph.edges().forEach(function(e) {
e.color = e.originalColor;
});
// Same as in the previous event:
s.refresh();
});
s.bind("doubleClickNode", function (e) {
$("#canvas-wrap, .sigma-scene, .sigma-mouse").val();
ajax_load_page( e.data.node.page_url );
});
var c = s.camera;
s.bind("rightClickStage", function (e) {
sigma.misc.animation.camera(c, {
ratio: c.ratio * c.settings('zoomingRatio')
}, {
duration: 200
});
});
// Configure the noverlap layout:
var noverlapListener = s.configNoverlap({
nodeMargin: 10,
scaleNodes: 0.3,
gridSize: 1,
easing: 'quadraticInOut', // animation transition function
duration: 4000 // animation duration. Long here for the purposes of this example only
});
// Bind the events:
noverlapListener.bind('start stop interpolate', function(e) {
//console.log(e.type);
if(e.type === 'start') {
//console.time('noverlap');
}
if(e.type === 'interpolate') {
//console.timeEnd('noverlap');
}
});
// Start the layout:
s.startNoverlap();
//s.refresh();
// Initialize the dragNodes plugin:
var dragListener = sigma.plugins.dragNodes(s, s.renderers[0]);
dragListener.bind('startdrag', function(event) {
});
dragListener.bind('drag', function(event) {
});
dragListener.bind('drop', function(event) {
});
dragListener.bind('dragend', function(event) {
});