GUIDE
- Left-click and drag the background to move the graph
- Left-click and drag the nodes to reorganize
- Left-click a node to view first level connections
- Double left-click a node to navigate to its page
- Double left-click the background to zoom in
- Right-click the background to zoom out
sigma.utils.pkg('sigma.canvas.nodes');
sigma.canvas.nodes.image = (function() {
var _cache = {},
_loading = {},
_callbacks = {};
// Return the renderer itself:
var renderer = function(node, context, settings) {
var args = arguments,
prefix = settings('prefix') || '',
size = node[prefix + 'size'],
color = node.color || settings('defaultNodeColor'),
url = node.url;
if (_cache[url]) {
context.save();
// Draw the clipping disc:
context.beginPath();
context.arc(
node[prefix + 'x'],
node[prefix + 'y'],
node[prefix + 'size'],
0,
Math.PI * 2,
true
);
context.closePath();
context.clip();
// Draw the image
context.drawImage(
_cache[url],
node[prefix + 'x'] - size,
node[prefix + 'y'] - size,
2 * size,
2 * size
);
// Quit the "clipping mode":
context.restore();
// Draw the border:
context.beginPath();
context.arc(
node[prefix + 'x'],
node[prefix + 'y'],
node[prefix + 'size'],
0,
Math.PI * 2,
true
);
context.lineWidth = 1;
context.strokeStyle = node.color || settings('defaultNodeColor');
context.stroke();
} else {
sigma.canvas.nodes.image.cache(url);
sigma.canvas.nodes.def.apply(
sigma.canvas.nodes,
args
);
}
};
// Let's add a public method to cache images, to make it possible to
// preload images before the initial rendering:
renderer.cache = function(url, callback) {
if (callback)
_callbacks[url] = callback;
if (_loading[url])
return;
var img = new Image();
img.onload = function() {
_loading[url] = false;
_cache[url] = img;
if (_callbacks[url]) {
_callbacks[url].call(this, img);
delete _callbacks[url];
}
};
_loading[url] = true;
img.src = url;
};
return renderer;
})();
var i,
s,
o,
offset_left = 0.5,
N = 1,
E = 40,
C = 5,
d = 0.5,
cs = [],
g = {
nodes: [],
edges: []
};
if (!sigma.classes.graph.hasMethod('neighbors')){
sigma.classes.graph.addMethod('neighbors', function(nodeId) {
var k,
neighbors = {},
index = this.allNeighborsIndex[nodeId] || {};
for (k in index)
neighbors[k] = this.nodesIndex[k];
return neighbors;
});
}
//adding the central node
g.nodes.push({
id: 6177,
label: 'Immunobiology of Infection',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/06/research.pasteur.fr_infection1-150x150.jpg',
x: 0,
y: 0,
size: 30,
color: '#DDDDDD'
});
N=7
var x_node = Math.cos(2 * 0 * Math.PI / N) * 2;
var y_node = Math.sin(2 * 0 * Math.PI / N) * 2;
var biggest_node_size = 0;
//check if content already exist
x_site = Math.cos(2 * 0 * Math.PI / N) * 2;
y_site = Math.sin(2 * 0 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 8684,
label: 'Véronique Mayau',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/08/research.pasteur.fr_véro2013-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/veronique-mayau/',
x: x_site,
y: y_site,
size: 16,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 61778684,
size: 0.5,
source: 6177,
target: 8684 });
//check if content already exist
x_site = Math.cos(2 * 1 * Math.PI / N) * 2;
y_site = Math.sin(2 * 1 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 4172,
label: 'Laure Guenin-Mace',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2017/04/research.pasteur.fr_photo-laure-pasteur-1-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/laure-guenin-mace/',
x: x_site,
y: y_site,
size: 16,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 61774172,
size: 0.5,
source: 6177,
target: 4172 });
//check if content already exist
x_site = Math.cos(2 * 2 * Math.PI / N) * 2;
y_site = Math.sin(2 * 2 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 60900,
label: 'Thomas Laval',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/12/research.pasteur.fr_thomas-laval-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/thomas-laval/',
x: x_site,
y: y_site,
size: 16,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 617760900,
size: 0.5,
source: 6177,
target: 60900 });
//check if content already exist
x_site = Math.cos(2 * 3 * Math.PI / N) * 2;
y_site = Math.sin(2 * 3 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 31256,
label: 'Marie-Luce Kop',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/09/research.pasteur.fr_marie-luce-kop-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/marie-luce-kop/',
x: x_site,
y: y_site,
size: 16,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 617731256,
size: 0.5,
source: 6177,
target: 31256 });
//check if content already exist
x_site = Math.cos(2 * 4 * Math.PI / N) * 2;
y_site = Math.sin(2 * 4 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 4457,
label: 'Gilles Dadaglio',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_ha5-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/gilles-dadaglio/',
x: x_site,
y: y_site,
size: 16,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 61774457,
size: 0.5,
source: 6177,
target: 4457 });
//check if content already exist
x_site = Math.cos(2 * 5 * Math.PI / N) * 2;
y_site = Math.sin(2 * 5 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 131237,
label: 'Antoine Domenger',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/member/antoine-domenger/',
x: x_site,
y: y_site,
size: 16,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 6177131237,
size: 0.5,
source: 6177,
target: 131237 });
//check if content already exist
x_site = Math.cos(2 * 6 * Math.PI / N) * 2;
y_site = Math.sin(2 * 6 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 4171,
label: 'Caroline Demangel',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2018/03/research_pasteur-id_caro_2018-3-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/caroline-demangel/',
x: x_site,
y: y_site,
size: 16,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 61774171,
size: 0.5,
source: 6177,
target: 4171 });
// update positions
x_node = Math.cos(2 * 0 * Math.PI / N) * 10;
y_node = Math.sin(2 * 0 * Math.PI / N) * 10;
N=12
// adding node
var x_node = Math.cos(2 * 0 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 0 * Math.PI / N) * 10;
g.nodes.push({
id: 131047,
label: 'EVENT: Department of Immunology seminar: Harry Sokol, Gut Microbiome, intestinal inflammation and Tryptophan Metabolism',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/event/department-of-immunology-seminar-hary-sokol-gut-microbiome-intestinal-inflammation-and-tryptophan-metabolism/',
size: 24,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 6177131047,
size: 0.5,
source: 6177,
target: 131047 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4171) {
n.size = n.size + 10;
if ( n.size > biggest_node_size ){
biggest_node_size = n.size;
}
}
});
g.nodes.forEach(function(n) {
if (n.id == 6177) {
if ( n.size < biggest_node_size ){
n.size = biggest_node_size;
}
}
});
//link to content
g.edges.push({
id: 1310474171,
size: 0.5,
source: 131047,
target: 4171 });
// adding node
var x_node = Math.cos(2 * 1 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 1 * Math.PI / N) * 10;
g.nodes.push({
id: 121989,
label: 'TEAM: Immunomodulation and infection',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/team/immunomodulation-and-infection/',
size: 24,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 6177121989,
size: 0.5,
source: 6177,
target: 121989 });
// adding node
var x_node = Math.cos(2 * 2 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 2 * Math.PI / N) * 10;
g.nodes.push({
id: 112875,
label: 'EVENT: Thesis Defence by Jean-David Morel: Mechanism underpinning the immunosuppressive effects of the mycobacterial macrolide mycolactone',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/event/mechanism-underpinning-the-immunosuppressive-effects-of-the-mycobacterial-macrolide-mycolactone/',
size: 24,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 6177112875,
size: 0.5,
source: 6177,
target: 112875 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 8685,
label: 'Jean-David Morel',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/08/research.pasteur.fr_capture-d’écran-2015-08-04-à-14.10.56-150x150.png',
page_url: 'https://research.pasteur.fr/en/member/jean-david-morel/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 1128758685,
size: 0.5,
source: 112875,
target: 8685 });
// adding node
var x_node = Math.cos(2 * 3 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 3 * Math.PI / N) * 10;
g.nodes.push({
id: 32169,
label: 'PROJECT: Therapeutic potential of mycolactone surrogates',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/08/research.pasteur.fr_mycolactone-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/project/therapeutic-potential-of-mycolactone/',
size: 24,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 617732169,
size: 0.5,
source: 6177,
target: 32169 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4172) {
n.size = n.size + 10;
if ( n.size > biggest_node_size ){
biggest_node_size = n.size;
}
}
});
g.nodes.forEach(function(n) {
if (n.id == 6177) {
if ( n.size < biggest_node_size ){
n.size = biggest_node_size;
}
}
});
//link to content
g.edges.push({
id: 321694172,
size: 0.5,
source: 32169,
target: 4172 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4170,
label: 'Ludivine Baron',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/08/research.pasteur.fr_capture-d’écran-2015-08-04-à-14.23.22-150x150.png',
page_url: 'https://research.pasteur.fr/en/member/ludivine-baron/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 321694170,
size: 0.5,
source: 32169,
target: 4170 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 91098,
label: 'Noémie Alphonse',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2017/06/research_pasteur-img107-1-150x150.jpeg',
page_url: 'https://research.pasteur.fr/en/member/noemie-alphonse/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 3216991098,
size: 0.5,
source: 32169,
target: 91098 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 8685) {
n.size = n.size + 10;
if ( n.size > biggest_node_size ){
biggest_node_size = n.size;
}
}
});
g.nodes.forEach(function(n) {
if (n.id == 6177) {
if ( n.size < biggest_node_size ){
n.size = biggest_node_size;
}
}
});
//link to content
g.edges.push({
id: 321698685,
size: 0.5,
source: 32169,
target: 8685 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4171) {
n.size = n.size + 10;
if ( n.size > biggest_node_size ){
biggest_node_size = n.size;
}
}
});
g.nodes.forEach(function(n) {
if (n.id == 6177) {
if ( n.size < biggest_node_size ){
n.size = biggest_node_size;
}
}
});
//link to content
g.edges.push({
id: 321694171,
size: 0.5,
source: 32169,
target: 4171 });
// adding node
var x_node = Math.cos(2 * 4 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 4 * Math.PI / N) * 10;
g.nodes.push({
id: 32156,
label: 'PROJECT: Mycolactone of M. ulcerans and immunodulation',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/08/research.pasteur.fr_capture-d’écran-2015-08-07-à-19.19.27-150x150.png',
page_url: 'https://research.pasteur.fr/en/project/mycolactone-of-m-ulcerans-and-immunodulation/',
size: 24,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 617732156,
size: 0.5,
source: 6177,
target: 32156 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4172) {
n.size = n.size + 10;
if ( n.size > biggest_node_size ){
biggest_node_size = n.size;
}
}
});
g.nodes.forEach(function(n) {
if (n.id == 6177) {
if ( n.size < biggest_node_size ){
n.size = biggest_node_size;
}
}
});
//link to content
g.edges.push({
id: 321564172,
size: 0.5,
source: 32156,
target: 4172 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4170) {
n.size = n.size + 10;
if ( n.size > biggest_node_size ){
biggest_node_size = n.size;
}
}
});
g.nodes.forEach(function(n) {
if (n.id == 6177) {
if ( n.size < biggest_node_size ){
n.size = biggest_node_size;
}
}
});
//link to content
g.edges.push({
id: 321564170,
size: 0.5,
source: 32156,
target: 4170 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 8685) {
n.size = n.size + 10;
if ( n.size > biggest_node_size ){
biggest_node_size = n.size;
}
}
});
g.nodes.forEach(function(n) {
if (n.id == 6177) {
if ( n.size < biggest_node_size ){
n.size = biggest_node_size;
}
}
});
//link to content
g.edges.push({
id: 321568685,
size: 0.5,
source: 32156,
target: 8685 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4171) {
n.size = n.size + 10;
if ( n.size > biggest_node_size ){
biggest_node_size = n.size;
}
}
});
g.nodes.forEach(function(n) {
if (n.id == 6177) {
if ( n.size < biggest_node_size ){
n.size = biggest_node_size;
}
}
});
//link to content
g.edges.push({
id: 321564171,
size: 0.5,
source: 32156,
target: 4171 });
// adding node
var x_node = Math.cos(2 * 5 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 5 * Math.PI / N) * 10;
g.nodes.push({
id: 31978,
label: 'PROJECT: Biomarkers of Buruli ulcer disease',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/08/research.pasteur.fr_capture-d’écran-2015-08-07-à-18.02.30-150x150.png',
page_url: 'https://research.pasteur.fr/en/project/biomarkers-of-buruli-ulcer-disease/',
size: 24,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 617731978,
size: 0.5,
source: 6177,
target: 31978 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4172) {
n.size = n.size + 10;
if ( n.size > biggest_node_size ){
biggest_node_size = n.size;
}
}
});
g.nodes.forEach(function(n) {
if (n.id == 6177) {
if ( n.size < biggest_node_size ){
n.size = biggest_node_size;
}
}
});
//link to content
g.edges.push({
id: 319784172,
size: 0.5,
source: 31978,
target: 4172 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4171) {
n.size = n.size + 10;
if ( n.size > biggest_node_size ){
biggest_node_size = n.size;
}
}
});
g.nodes.forEach(function(n) {
if (n.id == 6177) {
if ( n.size < biggest_node_size ){
n.size = biggest_node_size;
}
}
});
//link to content
g.edges.push({
id: 319784171,
size: 0.5,
source: 31978,
target: 4171 });
// adding node
var x_node = Math.cos(2 * 6 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 6 * Math.PI / N) * 10;
g.nodes.push({
id: 21589,
label: 'PROGRAM_PROJECT: Institut Carnot Pasteur MS',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_bac-culture-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/program_project/ms-carnot/',
size: 24,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 617721589,
size: 0.5,
source: 6177,
target: 21589 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 100631,
label: 'Axel Bonetto',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2018/01/research_pasteur-photo-axel-bonetto-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/axel-bonetto/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 21589100631,
size: 0.5,
source: 21589,
target: 100631 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 118894,
label: 'Marion Le Foll',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/member/marion-le-foll/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 21589118894,
size: 0.5,
source: 21589,
target: 118894 });
//check if content already exist
if (x_node<0){
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label: 'Reid Oldenburg',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/08/research.pasteur.fr_capture-d’écran-2015-08-04-à-14.19.41-150x150.png',
page_url: 'https://research.pasteur.fr/en/member/reid-oldenburg/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 196384174,
size: 0.5,
source: 19638,
target: 4174 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4171) {
n.size = n.size + 10;
if ( n.size > biggest_node_size ){
biggest_node_size = n.size;
}
}
});
g.nodes.forEach(function(n) {
if (n.id == 6177) {
if ( n.size < biggest_node_size ){
n.size = biggest_node_size;
}
}
});
//link to content
g.edges.push({
id: 196384171,
size: 0.5,
source: 19638,
target: 4171 });
// adding node
var x_node = Math.cos(2 * 9 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 9 * Math.PI / N) * 10;
g.nodes.push({
id: 19631,
label: 'PROJECT: Mycolactone of M. ulcerans and the actin cytoskeleton',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/08/research.pasteur.fr_hela-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/project/mycolactone-and-m-ulcerans-pathogenicity/',
size: 24,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 617719631,
size: 0.5,
source: 6177,
target: 19631 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 8685) {
n.size = n.size + 10;
if ( n.size > biggest_node_size ){
biggest_node_size = n.size;
}
}
});
g.nodes.forEach(function(n) {
if (n.id == 6177) {
if ( n.size < biggest_node_size ){
n.size = biggest_node_size;
}
}
});
//link to content
g.edges.push({
id: 196318685,
size: 0.5,
source: 19631,
target: 8685 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4172) {
n.size = n.size + 10;
if ( n.size > biggest_node_size ){
biggest_node_size = n.size;
}
}
});
g.nodes.forEach(function(n) {
if (n.id == 6177) {
if ( n.size < biggest_node_size ){
n.size = biggest_node_size;
}
}
});
//link to content
g.edges.push({
id: 196314172,
size: 0.5,
source: 19631,
target: 4172 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 60880,
label: 'Caroline Isaac',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/12/research.pasteur.fr_capture-d’écran-2015-12-10-à-14.00.30-150x150.png',
page_url: 'https://research.pasteur.fr/en/member/caroline-isaac/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 1963160880,
size: 0.5,
source: 19631,
target: 60880 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4171) {
n.size = n.size + 10;
if ( n.size > biggest_node_size ){
biggest_node_size = n.size;
}
}
});
g.nodes.forEach(function(n) {
if (n.id == 6177) {
if ( n.size < biggest_node_size ){
n.size = biggest_node_size;
}
}
});
//link to content
g.edges.push({
id: 196314171,
size: 0.5,
source: 19631,
target: 4171 });
// adding node
var x_node = Math.cos(2 * 10 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 10 * Math.PI / N) * 10;
g.nodes.push({
id: 15,
label: 'DEPARTMENT: Cell Biology & Infection',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_cells_under_a_microscope-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/department/cell-biology-infection/',
size: 24,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 617715,
size: 0.5,
source: 6177,
target: 15 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 107500,
label: 'Gessyca Geoffroy',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/member/gessyca-geoffroy/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 15107500,
size: 0.5,
source: 15,
target: 107500 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4470,
label: 'Marc Lecuit',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2017/05/research_pasteur-sans-titre-2-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/marc-lecuit/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 154470,
size: 0.5,
source: 15,
target: 4470 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 51154,
label: 'Guillaume Dumenil',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/09/research.pasteur.fr_research.pasteur.fr_fig101-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/guillaume-dumenil/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 1551154,
size: 0.5,
source: 15,
target: 51154 });
// adding node
var x_node = Math.cos(2 * 11 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 11 * Math.PI / N) * 10;
g.nodes.push({
id: 32,
label: 'DEPARTMENT: Immunology',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/06/research.pasteur.fr_immunology-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/department/immunology/',
size: 24,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 617732,
size: 0.5,
source: 6177,
target: 32 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 7039,
label: 'Marie-Laure Goupil',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/09/research.pasteur.fr_photo-marie-laure-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/marie-laure-goupil/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 327039,
size: 0.5,
source: 32,
target: 7039 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 3982) {
n.size = n.size + 10;
if ( n.size > biggest_node_size ){
biggest_node_size = n.size;
}
}
});
g.nodes.forEach(function(n) {
if (n.id == 6177) {
if ( n.size < biggest_node_size ){
n.size = biggest_node_size;
}
}
});
//link to content
g.edges.push({
id: 323982,
size: 0.5,
source: 32,
target: 3982 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4171) {
n.size = n.size + 10;
if ( n.size > biggest_node_size ){
biggest_node_size = n.size;
}
}
});
g.nodes.forEach(function(n) {
if (n.id == 6177) {
if ( n.size < biggest_node_size ){
n.size = biggest_node_size;
}
}
});
//link to content
g.edges.push({
id: 324171,
size: 0.5,
source: 32,
target: 4171 });
var s = new sigma({
//container: document.getElementById('graph-main'),
graph: g,
renderer: {
// IMPORTANT:
// This works only with the canvas renderer, so the
// renderer type set as "canvas" is necessary here.
container: document.getElementById('graph-main'),
type: 'canvas'
},
settings: {
minNodeSize: 12,
maxNodeSize: 30,
mouseWheelEnabled: false,
font: 'Montserrat',
labelThreshold:25,
borderSize:1,
defaultNodeBorderColor: '#333',
sideMargin:25,
}
});
// We first need to save the original colors of our
// nodes and edges, like this:
s.graph.nodes().forEach(function(n) {
n.originalColor = n.color;
//console.log(n.id);
//console.log(s.graph.nodes(n.id));
});
s.graph.edges().forEach(function(e) {
e.originalColor = e.color;
});
// When a node is clicked, we check for each node
// if it is a neighbor of the clicked one. If not,
// we set its color as grey, and else, it takes its
// original color.
// We do the same for the edges, and we only keep
// edges that have both extremities colored.
s.bind('clickNode', function(e) {
var nodeId = e.data.node.id,
toKeep = s.graph.neighbors(nodeId);
toKeep[nodeId] = e.data.node;
s.graph.nodes().forEach(function(n) {
if (toKeep[n.id])
n.color = '#35a9f5';
else
n.color = '#dddddd';
});
s.graph.edges().forEach(function(e) {
if (toKeep[e.source] && toKeep[e.target])
e.color = '#35a9f5';
else
e.color = '#dddddd';
});
// Since the data has been modified, we need to
// call the refresh method to make the colors
// update effective.
s.refresh();
});
// When the stage is clicked, we just color each
// node and edge with its original color.
s.bind('clickStage', function(e) {
s.graph.nodes().forEach(function(n) {
n.color = n.originalColor;
});
s.graph.edges().forEach(function(e) {
e.color = e.originalColor;
});
// Same as in the previous event:
s.refresh();
});
s.bind("doubleClickNode", function (e) {
$("#canvas-wrap, .sigma-scene, .sigma-mouse").val();
ajax_load_page( e.data.node.page_url );
});
var c = s.camera;
s.bind("rightClickStage", function (e) {
sigma.misc.animation.camera(c, {
ratio: c.ratio * c.settings('zoomingRatio')
}, {
duration: 200
});
});
// Configure the noverlap layout:
var noverlapListener = s.configNoverlap({
nodeMargin: 10,
scaleNodes: 0.3,
gridSize: 1,
easing: 'quadraticInOut', // animation transition function
duration: 4000 // animation duration. Long here for the purposes of this example only
});
// Bind the events:
noverlapListener.bind('start stop interpolate', function(e) {
//console.log(e.type);
if(e.type === 'start') {
//console.time('noverlap');
}
if(e.type === 'interpolate') {
//console.timeEnd('noverlap');
}
});
// Start the layout:
s.startNoverlap();
//s.refresh();
// Initialize the dragNodes plugin:
var dragListener = sigma.plugins.dragNodes(s, s.renderers[0]);
dragListener.bind('startdrag', function(event) {
});
dragListener.bind('drag', function(event) {
});
dragListener.bind('drop', function(event) {
});
dragListener.bind('dragend', function(event) {
});