GUIDE
- Left-click and drag the background to move the graph
- Left-click and drag the nodes to reorganize
- Left-click a node to view first level connections
- Double left-click a node to navigate to its page
- Double left-click the background to zoom in
- Right-click the background to zoom out
sigma.utils.pkg('sigma.canvas.nodes');
sigma.canvas.nodes.image = (function() {
var _cache = {},
_loading = {},
_callbacks = {};
// Return the renderer itself:
var renderer = function(node, context, settings) {
var args = arguments,
prefix = settings('prefix') || '',
size = node[prefix + 'size'],
color = node.color || settings('defaultNodeColor'),
url = node.url;
if (_cache[url]) {
context.save();
// Draw the clipping disc:
context.beginPath();
context.arc(
node[prefix + 'x'],
node[prefix + 'y'],
node[prefix + 'size'],
0,
Math.PI * 2,
true
);
context.closePath();
context.clip();
// Draw the image
context.drawImage(
_cache[url],
node[prefix + 'x'] - size,
node[prefix + 'y'] - size,
2 * size,
2 * size
);
// Quit the "clipping mode":
context.restore();
// Draw the border:
context.beginPath();
context.arc(
node[prefix + 'x'],
node[prefix + 'y'],
node[prefix + 'size'],
0,
Math.PI * 2,
true
);
context.lineWidth = 1;
context.strokeStyle = node.color || settings('defaultNodeColor');
context.stroke();
} else {
sigma.canvas.nodes.image.cache(url);
sigma.canvas.nodes.def.apply(
sigma.canvas.nodes,
args
);
}
};
// Let's add a public method to cache images, to make it possible to
// preload images before the initial rendering:
renderer.cache = function(url, callback) {
if (callback)
_callbacks[url] = callback;
if (_loading[url])
return;
var img = new Image();
img.onload = function() {
_loading[url] = false;
_cache[url] = img;
if (_callbacks[url]) {
_callbacks[url].call(this, img);
delete _callbacks[url];
}
};
_loading[url] = true;
img.src = url;
};
return renderer;
})();
var i,
s,
o,
offset_left = 0.5,
N = 1,
E = 40,
C = 5,
d = 0.5,
cs = [],
g = {
nodes: [],
edges: []
};
if (!sigma.classes.graph.hasMethod('neighbors')){
sigma.classes.graph.addMethod('neighbors', function(nodeId) {
var k,
neighbors = {},
index = this.allNeighborsIndex[nodeId] || {};
for (k in index)
neighbors[k] = this.nodesIndex[k];
return neighbors;
});
}
//adding the central node
g.nodes.push({
id: 6164,
label: 'Bacterial Genome Plasticity',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/09/research.pasteur.fr_mazel-150x150.jpg',
x: 0,
y: 0,
size: 30,
color: '#DDDDDD'
});
N=14
var x_node = Math.cos(2 * 0 * Math.PI / N) * 2;
var y_node = Math.sin(2 * 0 * Math.PI / N) * 2;
var biggest_node_size = 0;
//check if content already exist
x_site = Math.cos(2 * 0 * Math.PI / N) * 2;
y_site = Math.sin(2 * 0 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 4533,
label: 'Céline Loot',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/09/research.pasteur.fr_img_21712-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/celine-loot/',
x: x_site,
y: y_site,
size: 16,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 61644533,
size: 0.5,
source: 6164,
target: 4533 });
//check if content already exist
x_site = Math.cos(2 * 1 * Math.PI / N) * 2;
y_site = Math.sin(2 * 1 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 4535,
label: 'Zeynep Baharoglu',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/09/research.pasteur.fr_zb-1-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/zeynep-baharoglu/',
x: x_site,
y: y_site,
size: 16,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 61644535,
size: 0.5,
source: 6164,
target: 4535 });
//check if content already exist
x_site = Math.cos(2 * 2 * Math.PI / N) * 2;
y_site = Math.sin(2 * 2 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 4532,
label: 'Marie-Eve Val',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/08/research.pasteur.fr_photo-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/marie-eve-kennedy-val/',
x: x_site,
y: y_site,
size: 16,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 61644532,
size: 0.5,
source: 6164,
target: 4532 });
//check if content already exist
x_site = Math.cos(2 * 3 * Math.PI / N) * 2;
y_site = Math.sin(2 * 3 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 4546,
label: 'Evelyne Krin',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/09/research.pasteur.fr_img_1058-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/evelyne-krin/',
x: x_site,
y: y_site,
size: 16,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 61644546,
size: 0.5,
source: 6164,
target: 4546 });
//check if content already exist
x_site = Math.cos(2 * 4 * Math.PI / N) * 2;
y_site = Math.sin(2 * 4 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 8489,
label: 'Magaly Ducos-Galand',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/09/research.pasteur.fr_img_1057-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/magaly-ducos-galand/',
x: x_site,
y: y_site,
size: 16,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 61648489,
size: 0.5,
source: 6164,
target: 8489 });
//check if content already exist
x_site = Math.cos(2 * 5 * Math.PI / N) * 2;
y_site = Math.sin(2 * 5 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 98090,
label: 'Julia Bos',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2018/07/research_pasteur-picture1-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/fr-julia-bos/',
x: x_site,
y: y_site,
size: 16,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 616498090,
size: 0.5,
source: 6164,
target: 98090 });
//check if content already exist
x_site = Math.cos(2 * 6 * Math.PI / N) * 2;
y_site = Math.sin(2 * 6 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 82209,
label: 'Florian Fournès',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2017/01/research.pasteur.fr_f.-fournès_web-ip-1-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/florian-fournes/',
x: x_site,
y: y_site,
size: 16,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 616482209,
size: 0.5,
source: 6164,
target: 82209 });
//check if content already exist
x_site = Math.cos(2 * 7 * Math.PI / N) * 2;
y_site = Math.sin(2 * 7 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 82238,
label: 'Jakub Czarnecki',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2017/01/research.pasteur.fr_j.-czarnecki_web-ip-1-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/jakub-czarnecki/',
x: x_site,
y: y_site,
size: 16,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 616482238,
size: 0.5,
source: 6164,
target: 82238 });
//check if content already exist
x_site = Math.cos(2 * 8 * Math.PI / N) * 2;
y_site = Math.sin(2 * 8 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 8227,
label: 'Claire Vit',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2016/06/research.pasteur.fr_claire-trombi-1-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/claire-vit/',
x: x_site,
y: y_site,
size: 16,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 61648227,
size: 0.5,
source: 6164,
target: 8227 });
//check if content already exist
x_site = Math.cos(2 * 9 * Math.PI / N) * 2;
y_site = Math.sin(2 * 9 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 98077,
label: 'André Filipe Paulino Carvalho',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2017/10/research_pasteur-img-20161111-wa0000-2-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/andre-filipe-paulino-carvalho/',
x: x_site,
y: y_site,
size: 16,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 616498077,
size: 0.5,
source: 6164,
target: 98077 });
//check if content already exist
x_site = Math.cos(2 * 10 * Math.PI / N) * 2;
y_site = Math.sin(2 * 10 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 125257,
label: 'Richard Egill',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2019/04/research_pasteur-richard-egill-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/richard-egill/',
x: x_site,
y: y_site,
size: 16,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 6164125257,
size: 0.5,
source: 6164,
target: 125257 });
//check if content already exist
x_site = Math.cos(2 * 11 * Math.PI / N) * 2;
y_site = Math.sin(2 * 11 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 98481,
label: 'Evariste Bako',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2017/11/research_pasteur-photo-passport_bako-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/evariste-bako/',
x: x_site,
y: y_site,
size: 16,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 616498481,
size: 0.5,
source: 6164,
target: 98481 });
//check if content already exist
x_site = Math.cos(2 * 12 * Math.PI / N) * 2;
y_site = Math.sin(2 * 12 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 68493,
label: 'Isabelle Hoffmann',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2016/04/research.pasteur.fr_isabelle-hoffmann-150x150.png',
page_url: 'https://research.pasteur.fr/en/member/hoffmann-isabelle/',
x: x_site,
y: y_site,
size: 16,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 616468493,
size: 0.5,
source: 6164,
target: 68493 });
//check if content already exist
x_site = Math.cos(2 * 13 * Math.PI / N) * 2;
y_site = Math.sin(2 * 13 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 4541,
label: 'Didier Mazel',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/06/research.pasteur.fr_didier_mazel-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/didier-mazel/',
x: x_site,
y: y_site,
size: 16,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 61644541,
size: 0.5,
source: 6164,
target: 4541 });
// update positions
x_node = Math.cos(2 * 0 * Math.PI / N) * 10;
y_node = Math.sin(2 * 0 * Math.PI / N) * 10;
N=16
// adding node
var x_node = Math.cos(2 * 0 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 0 * Math.PI / N) * 10;
g.nodes.push({
id: 138325,
label: 'EVENT: ! CANCELLED ! “Revisiting DNA transfer by bacterial conjugation at the cellular scale” – GENOMES and GENETICS DEPARTMENT SEMINAR',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/event/revisiting-dna-transfer-by-bacterial-conjugation-at-the-cellular-scale-genomes-and-genetics-department-seminar/',
size: 24,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 6164138325,
size: 0.5,
source: 6164,
target: 138325 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4535) {
n.size = n.size + 10;
if ( n.size > biggest_node_size ){
biggest_node_size = n.size;
}
}
});
g.nodes.forEach(function(n) {
if (n.id == 6164) {
if ( n.size < biggest_node_size ){
n.size = biggest_node_size;
}
}
});
//link to content
g.edges.push({
id: 1383254535,
size: 0.5,
source: 138325,
target: 4535 });
// adding node
var x_node = Math.cos(2 * 1 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 1 * Math.PI / N) * 10;
g.nodes.push({
id: 132210,
label: 'PROJECT: RepliChroms : Replication Control in Bacteria with Multiple Chromosomes',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2019/09/research_pasteur-replichroms-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/project/replichroms-replication-control-in-bacteria-with-multiple-chromosomes/',
size: 24,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 6164132210,
size: 0.5,
source: 6164,
target: 132210 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4541) {
n.size = n.size + 10;
if ( n.size > biggest_node_size ){
biggest_node_size = n.size;
}
}
});
g.nodes.forEach(function(n) {
if (n.id == 6164) {
if ( n.size < biggest_node_size ){
n.size = biggest_node_size;
}
}
});
//link to content
g.edges.push({
id: 1322104541,
size: 0.5,
source: 132210,
target: 4541 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 82209) {
n.size = n.size + 10;
if ( n.size > biggest_node_size ){
biggest_node_size = n.size;
}
}
});
g.nodes.forEach(function(n) {
if (n.id == 6164) {
if ( n.size < biggest_node_size ){
n.size = biggest_node_size;
}
}
});
//link to content
g.edges.push({
id: 13221082209,
size: 0.5,
source: 132210,
target: 82209 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 82238) {
n.size = n.size + 10;
if ( n.size > biggest_node_size ){
biggest_node_size = n.size;
}
}
});
g.nodes.forEach(function(n) {
if (n.id == 6164) {
if ( n.size < biggest_node_size ){
n.size = biggest_node_size;
}
}
});
//link to content
g.edges.push({
id: 13221082238,
size: 0.5,
source: 132210,
target: 82238 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4532) {
n.size = n.size + 10;
if ( n.size > biggest_node_size ){
biggest_node_size = n.size;
}
}
});
g.nodes.forEach(function(n) {
if (n.id == 6164) {
if ( n.size < biggest_node_size ){
n.size = biggest_node_size;
}
}
});
//link to content
g.edges.push({
id: 1322104532,
size: 0.5,
source: 132210,
target: 4532 });
// adding node
var x_node = Math.cos(2 * 2 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 2 * Math.PI / N) * 10;
g.nodes.push({
id: 126392,
label: 'NEWS: A new bacteria-killing weapon in the fight against antibiotic resistance',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2019/05/research_pasteur-untitled-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/news/a-new-bacteria-killing-weapon-in-the-fight-against-antibiotic-resistance/',
size: 24,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 6164126392,
size: 0.5,
source: 6164,
target: 126392 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4541) {
n.size = n.size + 10;
if ( n.size > biggest_node_size ){
biggest_node_size = n.size;
}
}
});
g.nodes.forEach(function(n) {
if (n.id == 6164) {
if ( n.size < biggest_node_size ){
n.size = biggest_node_size;
}
}
});
//link to content
g.edges.push({
id: 1263924541,
size: 0.5,
source: 126392,
target: 4541 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4540,
label: 'Rocio Lopez Igual',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/09/research.pasteur.fr_dsc_0830-1-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/rocio-lopez-igual/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 1263924540,
size: 0.5,
source: 126392,
target: 4540 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4336,
label: 'Joaquin Bernal',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/09/research.pasteur.fr_joaquin2-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/joaquin-bernal/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 1263924336,
size: 0.5,
source: 126392,
target: 4336 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4337,
label: 'Jean-Marc Ghigo',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2018/09/research_pasteur-ghigo-jean-marc-recad.lg_-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/jean-marc-ghigo/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 1263924337,
size: 0.5,
source: 126392,
target: 4337 });
// adding node
var x_node = Math.cos(2 * 3 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 3 * Math.PI / N) * 10;
g.nodes.push({
id: 121808,
label: 'TEAM: Genetics of genomes',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/team/genetics-of-genomes/',
size: 24,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 6164121808,
size: 0.5,
source: 6164,
target: 121808 });
// adding node
var x_node = Math.cos(2 * 4 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 4 * Math.PI / N) * 10;
g.nodes.push({
id: 105173,
label: 'EVENT: “Caractérisation de la protéine RadD et identification des gènes essentiels en présence de faibles doses de tobramycine”',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/event/caracterisation-de-la-proteine-radd-et-identification-des-genes-essentiels-en-presence-de-faibles-doses-de-tobramycine-veronica-negro/',
size: 24,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 6164105173,
size: 0.5,
source: 6164,
target: 105173 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4541) {
n.size = n.size + 10;
if ( n.size > biggest_node_size ){
biggest_node_size = n.size;
}
}
});
g.nodes.forEach(function(n) {
if (n.id == 6164) {
if ( n.size < biggest_node_size ){
n.size = biggest_node_size;
}
}
});
//link to content
g.edges.push({
id: 1051734541,
size: 0.5,
source: 105173,
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g.edges.push({
id: 616422,
size: 0.5,
source: 6164,
target: 22 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 135044,
label: 'Capucine Fievet',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2019/12/research_pasteur-20191203_171601-3-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/capucine-fievet/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 22135044,
size: 0.5,
source: 22,
target: 135044 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 103214,
label: 'Frédéric Barras',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2018/04/research_pasteur-f-barras-1-150x150.png',
page_url: 'https://research.pasteur.fr/en/member/frederic-barras/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 22103214,
size: 0.5,
source: 22,
target: 103214 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4214,
label: 'Bruno Dupuy',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/09/research.pasteur.fr_bruno_id-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/bruno-dupuy/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 224214,
size: 0.5,
source: 22,
target: 4214 });
var s = new sigma({
//container: document.getElementById('graph-main'),
graph: g,
renderer: {
// IMPORTANT:
// This works only with the canvas renderer, so the
// renderer type set as "canvas" is necessary here.
container: document.getElementById('graph-main'),
type: 'canvas'
},
settings: {
minNodeSize: 12,
maxNodeSize: 30,
mouseWheelEnabled: false,
font: 'Montserrat',
labelThreshold:25,
borderSize:1,
defaultNodeBorderColor: '#333',
sideMargin:25,
}
});
// We first need to save the original colors of our
// nodes and edges, like this:
s.graph.nodes().forEach(function(n) {
n.originalColor = n.color;
//console.log(n.id);
//console.log(s.graph.nodes(n.id));
});
s.graph.edges().forEach(function(e) {
e.originalColor = e.color;
});
// When a node is clicked, we check for each node
// if it is a neighbor of the clicked one. If not,
// we set its color as grey, and else, it takes its
// original color.
// We do the same for the edges, and we only keep
// edges that have both extremities colored.
s.bind('clickNode', function(e) {
var nodeId = e.data.node.id,
toKeep = s.graph.neighbors(nodeId);
toKeep[nodeId] = e.data.node;
s.graph.nodes().forEach(function(n) {
if (toKeep[n.id])
n.color = '#35a9f5';
else
n.color = '#dddddd';
});
s.graph.edges().forEach(function(e) {
if (toKeep[e.source] && toKeep[e.target])
e.color = '#35a9f5';
else
e.color = '#dddddd';
});
// Since the data has been modified, we need to
// call the refresh method to make the colors
// update effective.
s.refresh();
});
// When the stage is clicked, we just color each
// node and edge with its original color.
s.bind('clickStage', function(e) {
s.graph.nodes().forEach(function(n) {
n.color = n.originalColor;
});
s.graph.edges().forEach(function(e) {
e.color = e.originalColor;
});
// Same as in the previous event:
s.refresh();
});
s.bind("doubleClickNode", function (e) {
$("#canvas-wrap, .sigma-scene, .sigma-mouse").val();
ajax_load_page( e.data.node.page_url );
});
var c = s.camera;
s.bind("rightClickStage", function (e) {
sigma.misc.animation.camera(c, {
ratio: c.ratio * c.settings('zoomingRatio')
}, {
duration: 200
});
});
// Configure the noverlap layout:
var noverlapListener = s.configNoverlap({
nodeMargin: 10,
scaleNodes: 0.3,
gridSize: 1,
easing: 'quadraticInOut', // animation transition function
duration: 4000 // animation duration. Long here for the purposes of this example only
});
// Bind the events:
noverlapListener.bind('start stop interpolate', function(e) {
//console.log(e.type);
if(e.type === 'start') {
//console.time('noverlap');
}
if(e.type === 'interpolate') {
//console.timeEnd('noverlap');
}
});
// Start the layout:
s.startNoverlap();
//s.refresh();
// Initialize the dragNodes plugin:
var dragListener = sigma.plugins.dragNodes(s, s.renderers[0]);
dragListener.bind('startdrag', function(event) {
});
dragListener.bind('drag', function(event) {
});
dragListener.bind('drop', function(event) {
});
dragListener.bind('dragend', function(event) {
});