GUIDE
- Left-click and drag the background to move the graph
- Left-click and drag the nodes to reorganize
- Left-click a node to view first level connections
- Double left-click a node to navigate to its page
- Double left-click the background to zoom in
- Right-click the background to zoom out
sigma.utils.pkg('sigma.canvas.nodes');
sigma.canvas.nodes.image = (function() {
var _cache = {},
_loading = {},
_callbacks = {};
// Return the renderer itself:
var renderer = function(node, context, settings) {
var args = arguments,
prefix = settings('prefix') || '',
size = node[prefix + 'size'],
color = node.color || settings('defaultNodeColor'),
url = node.url;
if (_cache[url]) {
context.save();
// Draw the clipping disc:
context.beginPath();
context.arc(
node[prefix + 'x'],
node[prefix + 'y'],
node[prefix + 'size'],
0,
Math.PI * 2,
true
);
context.closePath();
context.clip();
// Draw the image
context.drawImage(
_cache[url],
node[prefix + 'x'] - size,
node[prefix + 'y'] - size,
2 * size,
2 * size
);
// Quit the "clipping mode":
context.restore();
// Draw the border:
context.beginPath();
context.arc(
node[prefix + 'x'],
node[prefix + 'y'],
node[prefix + 'size'],
0,
Math.PI * 2,
true
);
context.lineWidth = 1;
context.strokeStyle = node.color || settings('defaultNodeColor');
context.stroke();
} else {
sigma.canvas.nodes.image.cache(url);
sigma.canvas.nodes.def.apply(
sigma.canvas.nodes,
args
);
}
};
// Let's add a public method to cache images, to make it possible to
// preload images before the initial rendering:
renderer.cache = function(url, callback) {
if (callback)
_callbacks[url] = callback;
if (_loading[url])
return;
var img = new Image();
img.onload = function() {
_loading[url] = false;
_cache[url] = img;
if (_callbacks[url]) {
_callbacks[url].call(this, img);
delete _callbacks[url];
}
};
_loading[url] = true;
img.src = url;
};
return renderer;
})();
var i,
s,
o,
offset_left = 0.5,
N = 1,
E = 40,
C = 5,
d = 0.5,
cs = [],
g = {
nodes: [],
edges: []
};
if (!sigma.classes.graph.hasMethod('neighbors')){
sigma.classes.graph.addMethod('neighbors', function(nodeId) {
var k,
neighbors = {},
index = this.allNeighborsIndex[nodeId] || {};
for (k in index)
neighbors[k] = this.nodesIndex[k];
return neighbors;
});
}
//adding the central node
g.nodes.push({
id: 6135,
label: 'Imaging and Modeling',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/06/research.pasteur.fr_superres-150x150.jpg',
x: 0,
y: 0,
size: 30,
color: '#DDDDDD'
});
N=10
var x_node = Math.cos(2 * 0 * Math.PI / N) * 2;
var y_node = Math.sin(2 * 0 * Math.PI / N) * 2;
var biggest_node_size = 0;
//check if content already exist
x_site = Math.cos(2 * 0 * Math.PI / N) * 2;
y_site = Math.sin(2 * 0 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 4981,
label: 'Mickael Lelek',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/06/research.pasteur.fr_mickael-lelek-1-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/mickael-lelek/',
x: x_site,
y: y_site,
size: 16,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 61354981,
size: 0.5,
source: 6135,
target: 4981 });
//check if content already exist
x_site = Math.cos(2 * 1 * Math.PI / N) * 2;
y_site = Math.sin(2 * 1 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 4982,
label: 'Christian Weber',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/06/research.pasteur.fr_christianweber-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/christian-weber/',
x: x_site,
y: y_site,
size: 16,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 61354982,
size: 0.5,
source: 6135,
target: 4982 });
//check if content already exist
x_site = Math.cos(2 * 2 * Math.PI / N) * 2;
y_site = Math.sin(2 * 2 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 4976,
label: 'Florian Muller',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/06/research.pasteur.fr_mueller_florian_picture-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/florian-muller/',
x: x_site,
y: y_site,
size: 16,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 61354976,
size: 0.5,
source: 6135,
target: 4976 });
//check if content already exist
x_site = Math.cos(2 * 3 * Math.PI / N) * 2;
y_site = Math.sin(2 * 3 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 79208,
label: 'Benoît Lelandais',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/member/benoit-lelandais/',
x: x_site,
y: y_site,
size: 16,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 613579208,
size: 0.5,
source: 6135,
target: 79208 });
//check if content already exist
x_site = Math.cos(2 * 4 * Math.PI / N) * 2;
y_site = Math.sin(2 * 4 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 4290,
label: 'Elèna Rensen',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_ele-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/elena-rensen/',
x: x_site,
y: y_site,
size: 16,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 61354290,
size: 0.5,
source: 6135,
target: 4290 });
//check if content already exist
x_site = Math.cos(2 * 5 * Math.PI / N) * 2;
y_site = Math.sin(2 * 5 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 8528,
label: 'Marie Lemesle',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2017/04/research.pasteur.fr_njg0ntk2.jpg',
page_url: 'https://research.pasteur.fr/en/member/marie-lemesle/',
x: x_site,
y: y_site,
size: 16,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 61358528,
size: 0.5,
source: 6135,
target: 8528 });
//check if content already exist
x_site = Math.cos(2 * 6 * Math.PI / N) * 2;
y_site = Math.sin(2 * 6 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 116350,
label: 'Manish Singh',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2018/11/research_pasteur-sans-titre-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/manish-singh/',
x: x_site,
y: y_site,
size: 16,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 6135116350,
size: 0.5,
source: 6135,
target: 116350 });
//check if content already exist
x_site = Math.cos(2 * 7 * Math.PI / N) * 2;
y_site = Math.sin(2 * 7 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 122291,
label: 'Thomas Sabaté',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2019/02/research_pasteur-thomas-sabate-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/thomas-sabate/',
x: x_site,
y: y_site,
size: 16,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 6135122291,
size: 0.5,
source: 6135,
target: 122291 });
//check if content already exist
x_site = Math.cos(2 * 8 * Math.PI / N) * 2;
y_site = Math.sin(2 * 8 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 135762,
label: 'Jiachuan Bai',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2019/11/research_pasteur-unnamed-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/jiachuan-bai/',
x: x_site,
y: y_site,
size: 16,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 6135135762,
size: 0.5,
source: 6135,
target: 135762 });
//check if content already exist
x_site = Math.cos(2 * 9 * Math.PI / N) * 2;
y_site = Math.sin(2 * 9 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 4977,
label: 'Christophe Zimmer',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/06/research.pasteur.fr_chzphoto-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/christophe-zimmer/',
x: x_site,
y: y_site,
size: 16,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 61354977,
size: 0.5,
source: 6135,
target: 4977 });
// update positions
x_node = Math.cos(2 * 0 * Math.PI / N) * 10;
y_node = Math.sin(2 * 0 * Math.PI / N) * 10;
N=17
// adding node
var x_node = Math.cos(2 * 0 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 0 * Math.PI / N) * 10;
g.nodes.push({
id: 125763,
label: 'DEPARTMENT: Computational Biology',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2019/06/research_pasteur-dept_computational_biology-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/department/computational-biology/',
size: 24,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 6135125763,
size: 0.5,
source: 6135,
target: 125763 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4729,
label: 'Marina Caillet',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_marina-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/marina-caillet/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 1257634729,
size: 0.5,
source: 125763,
target: 4729 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 104949,
label: 'Mélanie Bernardini Ridel',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2018/04/research_pasteur-zhqmk3fvz5qjzrvh-c5ijvianpy-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/melanie-ridel/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 125763104949,
size: 0.5,
source: 125763,
target: 104949 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 2879,
label: 'Olivier Gascuel',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/11/research.pasteur.fr_pasteurolivierg_crop21-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/olivier-gascuel/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 1257632879,
size: 0.5,
source: 125763,
target: 2879 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 83824,
label: 'Grégory Batt',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2017/11/research_pasteur-greg-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/gregory-batt/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 12576383824,
size: 0.5,
source: 125763,
target: 83824 });
// adding node
var x_node = Math.cos(2 * 1 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 1 * Math.PI / N) * 10;
g.nodes.push({
id: 121754,
label: 'TEAM: Physiological and pathological cellular dynamics',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/team/physiological-and-pathological-cellular-dynamics/',
size: 24,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 6135121754,
size: 0.5,
source: 6135,
target: 121754 });
// adding node
var x_node = Math.cos(2 * 2 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 2 * Math.PI / N) * 10;
g.nodes.push({
id: 116224,
label: 'EVENT: The 26th Pasteur-Weizmann symposium',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2018/11/research_pasteur-microtubules_7680x7680-red-cz-small-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/event/the-26th-pasteur-weizmann-symposium/',
size: 24,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 6135116224,
size: 0.5,
source: 6135,
target: 116224 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 3770,
label: 'Thomas Bourgeron',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/05/research.pasteur.fr_thomas-bourgeron-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/thomas-bourgeron/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 1162243770,
size: 0.5,
source: 116224,
target: 3770 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4977) {
n.size = n.size + 10;
if ( n.size > biggest_node_size ){
biggest_node_size = n.size;
}
}
});
g.nodes.forEach(function(n) {
if (n.id == 6135) {
if ( n.size < biggest_node_size ){
n.size = biggest_node_size;
}
}
});
//link to content
g.edges.push({
id: 1162244977,
size: 0.5,
source: 116224,
target: 4977 });
// adding node
var x_node = Math.cos(2 * 3 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 3 * Math.PI / N) * 10;
g.nodes.push({
id: 113256,
label: 'SOFTWARE: ZOLA-3D Zernike Optimized Localization approach',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2018/09/research_pasteur-supp_movie_3-150x150.jpeg',
page_url: 'https://research.pasteur.fr/en/software/zola-3d-zernike-optimized-localization-approach/',
size: 24,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 6135113256,
size: 0.5,
source: 6135,
target: 113256 });
// adding node
var x_node = Math.cos(2 * 4 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 4 * Math.PI / N) * 10;
g.nodes.push({
id: 110422,
label: 'EVENT: Neural networks – From brains to machines and vice versa',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/event/neural-networks-from-brains-to-machines-and-vice-versa/',
size: 24,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 6135110422,
size: 0.5,
source: 6135,
target: 110422 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 2489,
label: 'David DiGregorio',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/03/david-protrait-2011-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/david-digregorio/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 1104222489,
size: 0.5,
source: 110422,
target: 2489 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 50133,
label: 'Jean-Baptiste Masson',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2018/06/research_pasteur-jbm_photo_serieux_low_res-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/jean-baptiste-masson/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 11042250133,
size: 0.5,
source: 110422,
target: 50133 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 68280,
label: 'Christoph Schmidt-Hieber',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2016/04/research.pasteur.fr_headshot_800-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/christoph-schmidt-hieber/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 11042268280,
size: 0.5,
source: 110422,
target: 68280 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4977) {
n.size = n.size + 10;
if ( n.size > biggest_node_size ){
biggest_node_size = n.size;
}
}
});
g.nodes.forEach(function(n) {
if (n.id == 6135) {
if ( n.size < biggest_node_size ){
n.size = biggest_node_size;
}
}
});
//link to content
g.edges.push({
id: 1104224977,
size: 0.5,
source: 110422,
target: 4977 });
// adding node
var x_node = Math.cos(2 * 5 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 5 * Math.PI / N) * 10;
g.nodes.push({
id: 107564,
label: 'SOFTWARE: ANNA-PALM',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/software/anna-palm/',
size: 24,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 6135107564,
size: 0.5,
source: 6135,
target: 107564 });
// adding node
var x_node = Math.cos(2 * 6 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 6 * Math.PI / N) * 10;
g.nodes.push({
id: 77916,
label: 'PROGRAM_PROJECT: INCEPTION – Institut Convergence for the study of Emergence of Pathology Through Individuals and Populations',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2016/10/research.pasteur.fr_inception-program-institut-convergence-for-the-study-of-emergence-of-pathology-through-individuals-and-populations-150x150.jpeg',
page_url: 'https://research.pasteur.fr/en/program_project/inception/',
size: 24,
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id: 153704981,
size: 0.5,
source: 15370,
target: 4981 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4976) {
n.size = n.size + 10;
if ( n.size > biggest_node_size ){
biggest_node_size = n.size;
}
}
});
g.nodes.forEach(function(n) {
if (n.id == 6135) {
if ( n.size < biggest_node_size ){
n.size = biggest_node_size;
}
}
});
//link to content
g.edges.push({
id: 153704976,
size: 0.5,
source: 15370,
target: 4976 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4982) {
n.size = n.size + 10;
if ( n.size > biggest_node_size ){
biggest_node_size = n.size;
}
}
});
g.nodes.forEach(function(n) {
if (n.id == 6135) {
if ( n.size < biggest_node_size ){
n.size = biggest_node_size;
}
}
});
//link to content
g.edges.push({
id: 153704982,
size: 0.5,
source: 15370,
target: 4982 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 8690,
label: 'Sophie Abelanet',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/06/research.pasteur.fr_sophieabelanet-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/sophie-abelanet/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 153708690,
size: 0.5,
source: 15370,
target: 8690 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4974,
label: 'Jean-Michel Arbona',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/06/research.pasteur.fr_jm-arbona-hq-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/jean-michel-arbona/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 153704974,
size: 0.5,
source: 15370,
target: 4974 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4975,
label: 'Andrey Aristov',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_fig93-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/andrey-aristov/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 153704975,
size: 0.5,
source: 15370,
target: 4975 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 8691,
label: 'Benjamin King',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/06/research.pasteur.fr_bk_profilephotocr-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/benjamin-king/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 153708691,
size: 0.5,
source: 15370,
target: 8691 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4980,
label: 'Wei Ouyang',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/06/research.pasteur.fr_weiouyang-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/wei-ouyang/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 153704980,
size: 0.5,
source: 15370,
target: 4980 });
// adding node
var x_node = Math.cos(2 * 15 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 15 * Math.PI / N) * 10;
g.nodes.push({
id: 15367,
label: 'PROJECT: Nuclear architecture and function',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/09/research.pasteur.fr_image-wong-150x150.png',
page_url: 'https://research.pasteur.fr/en/project/nuclear-architecture-and-function/',
size: 24,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 613515367,
size: 0.5,
source: 6135,
target: 15367 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4977) {
n.size = n.size + 10;
if ( n.size > biggest_node_size ){
biggest_node_size = n.size;
}
}
});
g.nodes.forEach(function(n) {
if (n.id == 6135) {
if ( n.size < biggest_node_size ){
n.size = biggest_node_size;
}
}
});
//link to content
g.edges.push({
id: 153674977,
size: 0.5,
source: 15367,
target: 4977 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4981) {
n.size = n.size + 10;
if ( n.size > biggest_node_size ){
biggest_node_size = n.size;
}
}
});
g.nodes.forEach(function(n) {
if (n.id == 6135) {
if ( n.size < biggest_node_size ){
n.size = biggest_node_size;
}
}
});
//link to content
g.edges.push({
id: 153674981,
size: 0.5,
source: 15367,
target: 4981 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4976) {
n.size = n.size + 10;
if ( n.size > biggest_node_size ){
biggest_node_size = n.size;
}
}
});
g.nodes.forEach(function(n) {
if (n.id == 6135) {
if ( n.size < biggest_node_size ){
n.size = biggest_node_size;
}
}
});
//link to content
g.edges.push({
id: 153674976,
size: 0.5,
source: 15367,
target: 4976 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4982) {
n.size = n.size + 10;
if ( n.size > biggest_node_size ){
biggest_node_size = n.size;
}
}
});
g.nodes.forEach(function(n) {
if (n.id == 6135) {
if ( n.size < biggest_node_size ){
n.size = biggest_node_size;
}
}
});
//link to content
g.edges.push({
id: 153674982,
size: 0.5,
source: 15367,
target: 4982 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 8690) {
n.size = n.size + 10;
if ( n.size > biggest_node_size ){
biggest_node_size = n.size;
}
}
});
g.nodes.forEach(function(n) {
if (n.id == 6135) {
if ( n.size < biggest_node_size ){
n.size = biggest_node_size;
}
}
});
//link to content
g.edges.push({
id: 153678690,
size: 0.5,
source: 15367,
target: 8690 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4974) {
n.size = n.size + 10;
if ( n.size > biggest_node_size ){
biggest_node_size = n.size;
}
}
});
g.nodes.forEach(function(n) {
if (n.id == 6135) {
if ( n.size < biggest_node_size ){
n.size = biggest_node_size;
}
}
});
//link to content
g.edges.push({
id: 153674974,
size: 0.5,
source: 15367,
target: 4974 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4975) {
n.size = n.size + 10;
if ( n.size > biggest_node_size ){
biggest_node_size = n.size;
}
}
});
g.nodes.forEach(function(n) {
if (n.id == 6135) {
if ( n.size < biggest_node_size ){
n.size = biggest_node_size;
}
}
});
//link to content
g.edges.push({
id: 153674975,
size: 0.5,
source: 15367,
target: 4975 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 8691) {
n.size = n.size + 10;
if ( n.size > biggest_node_size ){
biggest_node_size = n.size;
}
}
});
g.nodes.forEach(function(n) {
if (n.id == 6135) {
if ( n.size < biggest_node_size ){
n.size = biggest_node_size;
}
}
});
//link to content
g.edges.push({
id: 153678691,
size: 0.5,
source: 15367,
target: 8691 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4980) {
n.size = n.size + 10;
if ( n.size > biggest_node_size ){
biggest_node_size = n.size;
}
}
});
g.nodes.forEach(function(n) {
if (n.id == 6135) {
if ( n.size < biggest_node_size ){
n.size = biggest_node_size;
}
}
});
//link to content
g.edges.push({
id: 153674980,
size: 0.5,
source: 15367,
target: 4980 });
// adding node
var x_node = Math.cos(2 * 16 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 16 * Math.PI / N) * 10;
g.nodes.push({
id: 15,
label: 'DEPARTMENT: Cell Biology & Infection',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_cells_under_a_microscope-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/department/cell-biology-infection/',
size: 24,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 613515,
size: 0.5,
source: 6135,
target: 15 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 107500,
label: 'Gessyca Geoffroy',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/member/gessyca-geoffroy/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 15107500,
size: 0.5,
source: 15,
target: 107500 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4470,
label: 'Marc Lecuit',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2017/05/research_pasteur-sans-titre-2-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/marc-lecuit/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 154470,
size: 0.5,
source: 15,
target: 4470 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 51154) {
n.size = n.size + 10;
if ( n.size > biggest_node_size ){
biggest_node_size = n.size;
}
}
});
g.nodes.forEach(function(n) {
if (n.id == 6135) {
if ( n.size < biggest_node_size ){
n.size = biggest_node_size;
}
}
});
//link to content
g.edges.push({
id: 1551154,
size: 0.5,
source: 15,
target: 51154 });
var s = new sigma({
//container: document.getElementById('graph-main'),
graph: g,
renderer: {
// IMPORTANT:
// This works only with the canvas renderer, so the
// renderer type set as "canvas" is necessary here.
container: document.getElementById('graph-main'),
type: 'canvas'
},
settings: {
minNodeSize: 12,
maxNodeSize: 30,
mouseWheelEnabled: false,
font: 'Montserrat',
labelThreshold:25,
borderSize:1,
defaultNodeBorderColor: '#333',
sideMargin:25,
}
});
// We first need to save the original colors of our
// nodes and edges, like this:
s.graph.nodes().forEach(function(n) {
n.originalColor = n.color;
//console.log(n.id);
//console.log(s.graph.nodes(n.id));
});
s.graph.edges().forEach(function(e) {
e.originalColor = e.color;
});
// When a node is clicked, we check for each node
// if it is a neighbor of the clicked one. If not,
// we set its color as grey, and else, it takes its
// original color.
// We do the same for the edges, and we only keep
// edges that have both extremities colored.
s.bind('clickNode', function(e) {
var nodeId = e.data.node.id,
toKeep = s.graph.neighbors(nodeId);
toKeep[nodeId] = e.data.node;
s.graph.nodes().forEach(function(n) {
if (toKeep[n.id])
n.color = '#35a9f5';
else
n.color = '#dddddd';
});
s.graph.edges().forEach(function(e) {
if (toKeep[e.source] && toKeep[e.target])
e.color = '#35a9f5';
else
e.color = '#dddddd';
});
// Since the data has been modified, we need to
// call the refresh method to make the colors
// update effective.
s.refresh();
});
// When the stage is clicked, we just color each
// node and edge with its original color.
s.bind('clickStage', function(e) {
s.graph.nodes().forEach(function(n) {
n.color = n.originalColor;
});
s.graph.edges().forEach(function(e) {
e.color = e.originalColor;
});
// Same as in the previous event:
s.refresh();
});
s.bind("doubleClickNode", function (e) {
$("#canvas-wrap, .sigma-scene, .sigma-mouse").val();
ajax_load_page( e.data.node.page_url );
});
var c = s.camera;
s.bind("rightClickStage", function (e) {
sigma.misc.animation.camera(c, {
ratio: c.ratio * c.settings('zoomingRatio')
}, {
duration: 200
});
});
// Configure the noverlap layout:
var noverlapListener = s.configNoverlap({
nodeMargin: 10,
scaleNodes: 0.3,
gridSize: 1,
easing: 'quadraticInOut', // animation transition function
duration: 4000 // animation duration. Long here for the purposes of this example only
});
// Bind the events:
noverlapListener.bind('start stop interpolate', function(e) {
//console.log(e.type);
if(e.type === 'start') {
//console.time('noverlap');
}
if(e.type === 'interpolate') {
//console.timeEnd('noverlap');
}
});
// Start the layout:
s.startNoverlap();
//s.refresh();
// Initialize the dragNodes plugin:
var dragListener = sigma.plugins.dragNodes(s, s.renderers[0]);
dragListener.bind('startdrag', function(event) {
});
dragListener.bind('drag', function(event) {
});
dragListener.bind('drop', function(event) {
});
dragListener.bind('dragend', function(event) {
});