GUIDE
- Left-click and drag the background to move the graph
- Left-click and drag the nodes to reorganize
- Left-click a node to view first level connections
- Double left-click a node to navigate to its page
- Double left-click the background to zoom in
- Right-click the background to zoom out
sigma.utils.pkg('sigma.canvas.nodes');
sigma.canvas.nodes.image = (function() {
var _cache = {},
_loading = {},
_callbacks = {};
// Return the renderer itself:
var renderer = function(node, context, settings) {
var args = arguments,
prefix = settings('prefix') || '',
size = node[prefix + 'size'],
color = node.color || settings('defaultNodeColor'),
url = node.url;
if (_cache[url]) {
context.save();
// Draw the clipping disc:
context.beginPath();
context.arc(
node[prefix + 'x'],
node[prefix + 'y'],
node[prefix + 'size'],
0,
Math.PI * 2,
true
);
context.closePath();
context.clip();
// Draw the image
context.drawImage(
_cache[url],
node[prefix + 'x'] - size,
node[prefix + 'y'] - size,
2 * size,
2 * size
);
// Quit the "clipping mode":
context.restore();
// Draw the border:
context.beginPath();
context.arc(
node[prefix + 'x'],
node[prefix + 'y'],
node[prefix + 'size'],
0,
Math.PI * 2,
true
);
context.lineWidth = 1;
context.strokeStyle = node.color || settings('defaultNodeColor');
context.stroke();
} else {
sigma.canvas.nodes.image.cache(url);
sigma.canvas.nodes.def.apply(
sigma.canvas.nodes,
args
);
}
};
// Let's add a public method to cache images, to make it possible to
// preload images before the initial rendering:
renderer.cache = function(url, callback) {
if (callback)
_callbacks[url] = callback;
if (_loading[url])
return;
var img = new Image();
img.onload = function() {
_loading[url] = false;
_cache[url] = img;
if (_callbacks[url]) {
_callbacks[url].call(this, img);
delete _callbacks[url];
}
};
_loading[url] = true;
img.src = url;
};
return renderer;
})();
var i,
s,
o,
offset_left = 0.5,
N = 1,
E = 40,
C = 5,
d = 0.5,
cs = [],
g = {
nodes: [],
edges: []
};
if (!sigma.classes.graph.hasMethod('neighbors')){
sigma.classes.graph.addMethod('neighbors', function(nodeId) {
var k,
neighbors = {},
index = this.allNeighborsIndex[nodeId] || {};
for (k in index)
neighbors[k] = this.nodesIndex[k];
return neighbors;
});
}
//adding the central node
g.nodes.push({
id: 4880,
label: 'Nolwenn Jouvenet',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/09/research.pasteur.fr_nolwenn-150x150.png',
x: 0,
y: 0,
size: 30,
color: '#DDDDDD'
});
var biggest_node_size = 0;
N=14
// adding node
var x_node = Math.cos(2 * 0 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 0 * Math.PI / N) * 10;
g.nodes.push({
id: 216604,
label: 'EVENT: Club viro: SARS-CoV2 RBD-Specific Antibodies /// APOBEC3F & Monkeypox virus',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/event/club-viro-sars-cov2-rbd-specific-antibodies-apobec3f-monkeypox-virus/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 4880216604,
size: 0.5,
source: 4880,
target: 216604,
});
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 69277,
label: 'Maël Bessaud',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2016/05/research_pasteur-mael-bessaud-bessaud-mael--150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/mael-bessaud/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 21660469277,
size: 0.5,
source: 216604,
target: 69277 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4880) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 2166044880,
size: 0.5,
source: 216604,
target: 4880 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4163,
label: 'Bruno Blondel',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/09/research.pasteur.fr_p1000035rec-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/bruno-blondel/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 2166044163,
size: 0.5,
source: 216604,
target: 4163 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4962,
label: 'Jean-Pierre Vartanian',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2024/09/research_pasteur-jean-pierre-vartanian-photo-jpv--150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/jean-pierre-vartanian/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 2166044962,
size: 0.5,
source: 216604,
target: 4962 });
// adding node
var x_node = Math.cos(2 * 1 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 1 * Math.PI / N) * 10;
g.nodes.push({
id: 208517,
label: 'EVENT: Club viro: Influenza A virus & TDP-43 /// SARS-CoV-2-mediated cell hijacking',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/event/club-viro-influenza-a-virus-tdp-43-sars-cov-2-mediated-cell-hijacking/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 4880208517,
size: 0.5,
source: 4880,
target: 208517,
});
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4880) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 2085174880,
size: 0.5,
source: 208517,
target: 4880 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 69277) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 20851769277,
size: 0.5,
source: 208517,
target: 69277 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4962) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 2085174962,
size: 0.5,
source: 208517,
target: 4962 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4163) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 2085174163,
size: 0.5,
source: 208517,
target: 4163 });
// adding node
var x_node = Math.cos(2 * 2 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 2 * Math.PI / N) * 10;
g.nodes.push({
id: 189914,
label: 'EVENT: ”SARS-CoV-2 replication and antiviral responses in bat cells”',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/event/sars-cov-2-replication-and-antiviral-responses-in-bat-cells/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 4880189914,
size: 0.5,
source: 4880,
target: 189914,
});
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 133636,
label: 'Sophie Aicher',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2019/10/research_pasteur-sophie-150x150.jpeg',
page_url: 'https://research.pasteur.fr/en/member/sophie-aicher/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 189914133636,
size: 0.5,
source: 189914,
target: 133636 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4880) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 1899144880,
size: 0.5,
source: 189914,
target: 4880 });
// adding node
var x_node = Math.cos(2 * 3 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 3 * Math.PI / N) * 10;
g.nodes.push({
id: 186507,
label: 'EVENT: The Cellular coup d’état
Executed by SARS-CoV-2 Proteases to Escape Anti-Viral Autophagy Defences and Steal Cellular resources',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/event/the-cellular-coup-detat-executed-by-sars-cov-2-proteases-to-escape-anti-viral-autophagy-defences-and-steal-cellular-resources/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 4880186507,
size: 0.5,
source: 4880,
target: 186507,
});
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4880) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 1865074880,
size: 0.5,
source: 186507,
target: 4880 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 1056,
label: 'Mariette Matondo',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/02/Mariette_Matondo-e1424076805247-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/mariette-matondo-bouzanda/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 1865071056,
size: 0.5,
source: 186507,
target: 1056 });
// adding node
var x_node = Math.cos(2 * 4 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 4 * Math.PI / N) * 10;
g.nodes.push({
id: 186681,
label: 'EVENT: Lessons learnt from coronavirus-host interactions in wildlife reservoirs and spill over hosts',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/event/lessons-learnt-from-coronavirus-host-interactions-in-wildlife-reservoirs-and-spill-over-hosts/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 4880186681,
size: 0.5,
source: 4880,
target: 186681,
});
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4880) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 1866814880,
size: 0.5,
source: 186681,
target: 4880 });
// adding node
var x_node = Math.cos(2 * 5 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 5 * Math.PI / N) * 10;
g.nodes.push({
id: 161187,
label: 'NEWS: Yellow fever: understanding the rare side effects of vaccines',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/news/genomic-diversity-contributes-to-the-neuroinvasiveness-of-the-yellow-fever-french-neurotropic-vaccine-nature-partner-journals-vaccines-26-april-2021/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 4880161187,
size: 0.5,
source: 4880,
target: 161187,
});
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4435,
label: 'Monique Lafon',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/09/research.pasteur.fr_m-lafon-site-web-2-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/monique-lafon/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 1611874435,
size: 0.5,
source: 161187,
target: 4435 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4880) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 1611874880,
size: 0.5,
source: 161187,
target: 4880 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 102053,
label: '',
type: 'image',
url: '',
page_url: '',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 161187102053,
size: 0.5,
source: 161187,
target: 102053 });
// adding node
var x_node = Math.cos(2 * 6 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 6 * Math.PI / N) * 10;
g.nodes.push({
id: 155690,
label: 'PROJECT: Effectors of the innate immune response against tick-borne encephalitis virus',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/project/effectors-of-the-innate-immune-response-against-tick-borne-encephalitis-virus/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 4880155690,
size: 0.5,
source: 4880,
target: 155690,
});
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4880) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 1556904880,
size: 0.5,
source: 155690,
target: 4880 });
// adding node
var x_node = Math.cos(2 * 7 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 7 * Math.PI / N) * 10;
g.nodes.push({
id: 155686,
label: 'PROJECT: Restriction of SARS-CoV-2 replication by coding and non-coding genes in human and bat cells',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/project/restriction-of-sars-cov-2-replication-by-coding-and-non-coding-genes-in-human-and-bat-cells/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 4880155686,
size: 0.5,
source: 4880,
target: 155686,
});
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4880) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 1556864880,
size: 0.5,
source: 155686,
target: 4880 });
// adding node
var x_node = Math.cos(2 * 8 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 8 * Math.PI / N) * 10;
g.nodes.push({
id: 151293,
label: 'PROJECT: Structural basis and functional outcomes of epi-transcriptomic modifications of (+)RNA virus genomes',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/project/structural-basis-and-functional-outcomes-of-epi-transcriptomic-modifications-of-rna-virus-genomes/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 4880151293,
size: 0.5,
source: 4880,
target: 151293,
});
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4880) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 1512934880,
size: 0.5,
source: 151293,
target: 4880 });
// adding node
var x_node = Math.cos(2 * 9 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 9 * Math.PI / N) * 10;
g.nodes.push({
id: 138030,
label: 'PROJECT: Modulation of HCV replication by novel effectors of the interferon response',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/project/modulation-of-hcv-replication-by-novel-effectors-of-the-interferon-response/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 4880138030,
size: 0.5,
source: 4880,
target: 138030,
});
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4929,
label: 'Annette Martin',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_annettemartin-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/annette-martin/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 1380304929,
size: 0.5,
source: 138030,
target: 4929 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4880) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 1380304880,
size: 0.5,
source: 138030,
target: 4880 });
// adding node
var x_node = Math.cos(2 * 10 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 10 * Math.PI / N) * 10;
g.nodes.push({
id: 138018,
label: 'PROJECT: Integrative Pathobiology of Tick-borne Flaviviruses',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/project/integrative-pathobiology-of-tick-borne-flaviviruses/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 4880138018,
size: 0.5,
source: 4880,
target: 138018,
});
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4880) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 1380184880,
size: 0.5,
source: 138018,
target: 4880 });
// adding node
var x_node = Math.cos(2 * 11 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 11 * Math.PI / N) * 10;
g.nodes.push({
id: 119985,
label: 'PROJECT: Mechanisms underlying uncontrolled cytokine production upon viral infection',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/project/mechanisms-underlying-uncontrolled-cytokine-production-upon-viral-infection/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 4880119985,
size: 0.5,
source: 4880,
target: 119985,
});
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4880) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 1199854880,
size: 0.5,
source: 119985,
target: 4880 });
// adding node
var x_node = Math.cos(2 * 12 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 12 * Math.PI / N) * 10;
g.nodes.push({
id: 65444,
label: 'TEAM: Virus sensing and signaling',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/team/virus-sensing-and-signaling/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 488065444,
size: 0.5,
source: 4880,
target: 65444,
});
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4894,
label: 'Maxime Chazal',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2016/02/research.pasteur.fr_photo-pasteur-website-3-150x150.jpeg',
page_url: 'https://research.pasteur.fr/en/member/maxime-chazal/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 654444894,
size: 0.5,
source: 65444,
target: 4894 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 64902,
label: 'Ségolène Gracias',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2016/02/research.pasteur.fr_dsc_0304-e1455644622736-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/segolene-gracias/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 6544464902,
size: 0.5,
source: 65444,
target: 64902 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 114900,
label: 'Felix Streicher',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2018/11/research_pasteur-id_fstreicher-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/felix-streicher/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 65444114900,
size: 0.5,
source: 65444,
target: 114900 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4959,
label: 'Vincent Caval',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/05/research_pasteur-vincent-caval-img-6316-150x150.jpeg',
page_url: 'https://research.pasteur.fr/en/member/vincent-caval/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 654444959,
size: 0.5,
source: 65444,
target: 4959 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 88943,
label: 'Florence Jeannot',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/member/florence-jeannot/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 6544488943,
size: 0.5,
source: 65444,
target: 88943 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 69277) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 6544469277,
size: 0.5,
source: 65444,
target: 69277 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4168,
label: 'Marie-Line Joffret',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/08/research.pasteur.fr_diapositive112-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/marie-line-joffret/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 654444168,
size: 0.5,
source: 65444,
target: 4168 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 192367,
label: 'Typhaine Filhol',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2022/12/research_pasteur-typhaine-filhol-1696405874696-scaled-e1704443412654-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/typhaine-filhol/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 65444192367,
size: 0.5,
source: 65444,
target: 192367 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 216484,
label: 'Ambre Tinard',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/member/ambre-tinard/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 65444216484,
size: 0.5,
source: 65444,
target: 216484 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 231653,
label: 'Dana Hawasheen',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2024/10/research_pasteur-endana-hawasheenfrdana-hawasheen-1648761195660-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/dana-hawasheen/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 65444231653,
size: 0.5,
source: 65444,
target: 231653 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 231657,
label: 'Samuel Donaire Carpio',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2024/10/research_pasteur-ensamuel-donaire-carpiofrsamuel-donaire-carpio-photo-samuel-donaire-carpio-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/samuel-donaire-carpio/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 65444231657,
size: 0.5,
source: 65444,
target: 231657 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 232830,
label: 'Chloë Delon',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2024/10/research_pasteur-enchloe-delonfrchloe-delon-img-3360-1-150x150.jpeg',
page_url: 'https://research.pasteur.fr/en/member/232830/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 65444232830,
size: 0.5,
source: 65444,
target: 232830 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 86658,
label: 'Charlotte Baliere',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2019/08/research_pasteur-img_20190813_105124-1-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/charlotte-baliere/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 6544486658,
size: 0.5,
source: 65444,
target: 86658 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 233577,
label: 'Corentin Aubé',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/member/233577/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 65444233577,
size: 0.5,
source: 65444,
target: 233577 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4880) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 654444880,
size: 0.5,
source: 65444,
target: 4880 });
// adding node
var x_node = Math.cos(2 * 13 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 13 * Math.PI / N) * 10;
g.nodes.push({
id: 37862,
label: 'PROJECT: Understanding viral attenuation for the rationalization of vaccine design',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/09/research.pasteur.fr_gen2.2-on-infected-vero-cell1-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/project/understanding-viral-attenuation-for-the-rationalization-of-vaccine-design/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 488037862,
size: 0.5,
source: 4880,
target: 37862,
});
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4894) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 378624894,
size: 0.5,
source: 37862,
target: 4894 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 8401,
label: '',
type: 'image',
url: '',
page_url: '',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 378628401,
size: 0.5,
source: 37862,
target: 8401 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4882,
label: '',
type: 'image',
url: '',
page_url: '',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 378624882,
size: 0.5,
source: 37862,
target: 4882 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4888,
label: '',
type: 'image',
url: '',
page_url: '',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 378624888,
size: 0.5,
source: 37862,
target: 4888 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4890,
label: '',
type: 'image',
url: '',
page_url: '',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 378624890,
size: 0.5,
source: 37862,
target: 4890 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 96215,
label: '',
type: 'image',
url: '',
page_url: '',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 3786296215,
size: 0.5,
source: 37862,
target: 96215 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 87337,
label: '',
type: 'image',
url: '',
page_url: '',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 3786287337,
size: 0.5,
source: 37862,
target: 87337 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4880) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 378624880,
size: 0.5,
source: 37862,
target: 4880 });
var s = new sigma({
//container: document.getElementById('graph-main'),
graph: g,
renderer: {
// IMPORTANT:
// This works only with the canvas renderer, so the
// renderer type set as "canvas" is necessary here.
container: document.getElementById('graph-main'),
type: 'canvas'
},
settings: {
minNodeSize: 6,
maxNodeSize: 35,
mouseWheelEnabled: false,
font: 'Montserrat',
labelThreshold:25,
borderSize:1,
defaultNodeBorderColor: '#999',
sideMargin:25,
}
});
// We first need to save the original colors of our
// nodes and edges, like this:
s.graph.nodes().forEach(function(n) {
n.originalColor = n.color;
});
s.graph.edges().forEach(function(e) {
e.originalColor = e.color;
});
// When a node is clicked, we check for each node
// if it is a neighbor of the clicked one. If not,
// we set its color as grey, and else, it takes its
// original color.
// We do the same for the edges, and we only keep
// edges that have both extremities colored.
s.bind('clickNode', function(e) {
var nodeId = e.data.node.id,
toKeep = s.graph.neighbors(nodeId);
toKeep[nodeId] = e.data.node;
s.graph.nodes().forEach(function(n) {
if (toKeep[n.id])
n.color = '#35a9f5';
else
n.color = '#dddddd';
});
s.graph.edges().forEach(function(e) {
if (toKeep[e.source] && toKeep[e.target])
e.color = '#35a9f5';
else
e.color = '#dddddd';
});
// Since the data has been modified, we need to
// call the refresh method to make the colors
// update effective.
s.refresh();
});
// When the stage is clicked, we just color each
// node and edge with its original color.
s.bind('clickStage', function(e) {
s.graph.nodes().forEach(function(n) {
n.color = n.originalColor;
});
s.graph.edges().forEach(function(e) {
e.color = e.originalColor;
});
// Same as in the previous event:
s.refresh();
});
s.bind("doubleClickNode", function (e) {
$("#canvas-wrap, .sigma-scene, .sigma-mouse").val();
ajax_load_page( e.data.node.page_url );
});
var c = s.camera;
s.bind("rightClickStage", function (e) {
sigma.misc.animation.camera(c, {
ratio: c.ratio * c.settings('zoomingRatio')
}, {
duration: 200
});
});
// Configure the noverlap layout:
var noverlapListener = s.configNoverlap({
nodeMargin: 10,
scaleNodes: 0.3,
gridSize: 1,
easing: 'quadraticInOut', // animation transition function
duration: 4000 // animation duration. Long here for the purposes of this example only
});
// Bind the events:
noverlapListener.bind('start stop interpolate', function(e) {
//console.log(e.type);
if(e.type === 'start') {
//console.time('noverlap');
}
if(e.type === 'interpolate') {
//console.timeEnd('noverlap');
}
});
// Start the layout:
s.startNoverlap();
//s.refresh();
// Initialize the dragNodes plugin:
var dragListener = sigma.plugins.dragNodes(s, s.renderers[0]);
dragListener.bind('startdrag', function(event) {
});
dragListener.bind('drag', function(event) {
});
dragListener.bind('drop', function(event) {
});
dragListener.bind('dragend', function(event) {
});