GUIDE
- Left-click and drag the background to move the graph
- Left-click and drag the nodes to reorganize
- Left-click a node to view first level connections
- Double left-click a node to navigate to its page
- Double left-click the background to zoom in
- Right-click the background to zoom out
sigma.utils.pkg('sigma.canvas.nodes');
sigma.canvas.nodes.image = (function() {
var _cache = {},
_loading = {},
_callbacks = {};
// Return the renderer itself:
var renderer = function(node, context, settings) {
var args = arguments,
prefix = settings('prefix') || '',
size = node[prefix + 'size'],
color = node.color || settings('defaultNodeColor'),
url = node.url;
if (_cache[url]) {
context.save();
// Draw the clipping disc:
context.beginPath();
context.arc(
node[prefix + 'x'],
node[prefix + 'y'],
node[prefix + 'size'],
0,
Math.PI * 2,
true
);
context.closePath();
context.clip();
// Draw the image
context.drawImage(
_cache[url],
node[prefix + 'x'] - size,
node[prefix + 'y'] - size,
2 * size,
2 * size
);
// Quit the "clipping mode":
context.restore();
// Draw the border:
context.beginPath();
context.arc(
node[prefix + 'x'],
node[prefix + 'y'],
node[prefix + 'size'],
0,
Math.PI * 2,
true
);
context.lineWidth = 1;
context.strokeStyle = node.color || settings('defaultNodeColor');
context.stroke();
} else {
sigma.canvas.nodes.image.cache(url);
sigma.canvas.nodes.def.apply(
sigma.canvas.nodes,
args
);
}
};
// Let's add a public method to cache images, to make it possible to
// preload images before the initial rendering:
renderer.cache = function(url, callback) {
if (callback)
_callbacks[url] = callback;
if (_loading[url])
return;
var img = new Image();
img.onload = function() {
_loading[url] = false;
_cache[url] = img;
if (_callbacks[url]) {
_callbacks[url].call(this, img);
delete _callbacks[url];
}
};
_loading[url] = true;
img.src = url;
};
return renderer;
})();
var i,
s,
o,
offset_left = 0.5,
N = 1,
E = 40,
C = 5,
d = 0.5,
cs = [],
g = {
nodes: [],
edges: []
};
if (!sigma.classes.graph.hasMethod('neighbors')){
sigma.classes.graph.addMethod('neighbors', function(nodeId) {
var k,
neighbors = {},
index = this.allNeighborsIndex[nodeId] || {};
for (k in index)
neighbors[k] = this.nodesIndex[k];
return neighbors;
});
}
//adding the central node
g.nodes.push({
id: 4535,
label: 'Zeynep Baharoglu',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/09/research.pasteur.fr_zb-1-150x150.jpg',
x: 0,
y: 0,
size: 30,
color: '#DDDDDD'
});
var biggest_node_size = 0;
N=12
// adding node
var x_node = Math.cos(2 * 0 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 0 * Math.PI / N) * 10;
g.nodes.push({
id: 227249,
label: 'PROJECT: Étude d’une molécule potentialisant l’effet bactéricide des aminosides : POTAG (2023-039)',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/project/etude-dune-molecule-potentialisant-leffet-bactericide-des-aminosides-potag-2023-039/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 4535227249,
size: 0.5,
source: 4535,
target: 227249,
});
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4535) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 2272494535,
size: 0.5,
source: 227249,
target: 4535 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 8600,
label: 'Hélène Laude',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2018/10/research_pasteur-photo_helene_laude-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/helene-laude/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 2272498600,
size: 0.5,
source: 227249,
target: 8600 });
// adding node
var x_node = Math.cos(2 * 1 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 1 * Math.PI / N) * 10;
g.nodes.push({
id: 207510,
label: 'EVENT: GG department seminar: Kai Papenfort (University of Jena, Germany) : “From strings of nucleotides to collective behavior: Lessons from Vibrio cholerae” ; Thursday, September 21st @ 11.00am ; Auditorium F. Jacob',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/event/gg-department-seminar-kai-papenfort-university-of-jena-germany-from-strings-of-nucleotides-to-collective-behavior-lessons-from-vibrio-cholerae-thursday-september-21st-11-00am-auditor/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 4535207510,
size: 0.5,
source: 4535,
target: 207510,
});
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4535) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 2075104535,
size: 0.5,
source: 207510,
target: 4535 });
// adding node
var x_node = Math.cos(2 * 2 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 2 * Math.PI / N) * 10;
g.nodes.push({
id: 190913,
label: 'NEWS: “RNA modifications and epitranscriptomics” – November 14th, 2023',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/news/rna-modifications-and-epitranscriptomics-november-14th-2023/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 4535190913,
size: 0.5,
source: 4535,
target: 190913,
});
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4535) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 1909134535,
size: 0.5,
source: 190913,
target: 4535 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 67565,
label: 'Sebastian Baumgarten',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2016/04/research.pasteur.fr_img_0098-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/sebastian-baumgarten/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 19091367565,
size: 0.5,
source: 190913,
target: 67565 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4411,
label: 'Cosmin Saveanu',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/05/research_pasteur-cosmin-saveanu-img-20230106-112459small-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/cosmin-saveanu/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 1909134411,
size: 0.5,
source: 190913,
target: 4411 });
// adding node
var x_node = Math.cos(2 * 3 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 3 * Math.PI / N) * 10;
g.nodes.push({
id: 187719,
label: 'EVENT: Symposium: RNA modifications and epitranscriptomics',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/event/symposium-rna-modifications-and-epitranscriptomics/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 4535187719,
size: 0.5,
source: 4535,
target: 187719,
});
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4535) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 1877194535,
size: 0.5,
source: 187719,
target: 4535 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4411) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 1877194411,
size: 0.5,
source: 187719,
target: 4411 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 67565) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 18771967565,
size: 0.5,
source: 187719,
target: 67565 });
// adding node
var x_node = Math.cos(2 * 4 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 4 * Math.PI / N) * 10;
g.nodes.push({
id: 175417,
label: 'PROJECT: Phenotypic adaptation to antibiotics: t/rRNA modifications',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/project/phenotypic-adaptation-to-antibiotics-t-rrna-modifications/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 4535175417,
size: 0.5,
source: 4535,
target: 175417,
});
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 149225,
label: 'Anamaria Babosan',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2020/11/research_pasteur-babosan-anamaria-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/anamaria-babosan/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 175417149225,
size: 0.5,
source: 175417,
target: 149225 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4546,
label: 'Evelyne Krin',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/09/research.pasteur.fr_img_1058-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/evelyne-krin/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 1754174546,
size: 0.5,
source: 175417,
target: 4546 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 74050,
label: 'Blaise Li',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2016/07/research.pasteur.fr_blaise-low-resolution-150x150.png',
page_url: 'https://research.pasteur.fr/en/member/blaise-li/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 17541774050,
size: 0.5,
source: 175417,
target: 74050 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 1056,
label: 'Mariette Matondo',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/02/Mariette_Matondo-e1424076805247-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/mariette-matondo-bouzanda/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 1754171056,
size: 0.5,
source: 175417,
target: 1056 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 80008,
label: 'Quentin Giai Gianetto',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2016/11/research.pasteur.fr_p10001292_3-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/quentin-giai-gianetto/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 17541780008,
size: 0.5,
source: 175417,
target: 80008 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4541,
label: 'Didier Mazel',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/05/research_pasteur-didier-mazel-img-6478-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/didier-mazel/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 1754174541,
size: 0.5,
source: 175417,
target: 4541 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4535) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 1754174535,
size: 0.5,
source: 175417,
target: 4535 });
// adding node
var x_node = Math.cos(2 * 5 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 5 * Math.PI / N) * 10;
g.nodes.push({
id: 175381,
label: 'TEAM: Bacterial responses to antimicrobial stress',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/team/bacterial-responses-to-antimicrobial-stress/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 4535175381,
size: 0.5,
source: 4535,
target: 175381,
});
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 149214,
label: 'Manon Lang',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2020/11/research_pasteur-manon-lang-g-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/manon-lang/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 175381149214,
size: 0.5,
source: 175381,
target: 149214 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4546) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 1753814546,
size: 0.5,
source: 175381,
target: 4546 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 175973,
label: 'Louna Fruchard',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2022/02/research_pasteur-louna-fruchard-fruchard-louna-web-ip-150x150.jpeg',
page_url: 'https://research.pasteur.fr/en/member/louna-fruchard/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 175381175973,
size: 0.5,
source: 175381,
target: 175973 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 190680,
label: 'Léo Hardy',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2022/11/research_pasteur-leo-hardy-hardy-leo-web-ip-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/leo-hardy/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 175381190680,
size: 0.5,
source: 175381,
target: 190680 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4535) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 1753814535,
size: 0.5,
source: 175381,
target: 4535 });
// adding node
var x_node = Math.cos(2 * 6 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 6 * Math.PI / N) * 10;
g.nodes.push({
id: 163927,
label: 'NEWS: ANR PRC call : Congratulations to Zeynep Baharoglu (Department Genomes and Genetic) for her successful project proposal “ModRNAntibio”',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/news/anr-prc-call-congratulations-to-zeynep-baharoglu-department-genomes-and-genetic-for-her-successful-project-proposal-modrnantibio/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 4535163927,
size: 0.5,
source: 4535,
target: 163927,
});
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4535) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 1639274535,
size: 0.5,
source: 163927,
target: 4535 });
// adding node
var x_node = Math.cos(2 * 7 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 7 * Math.PI / N) * 10;
g.nodes.push({
id: 152156,
label: 'EVENT: G&G PhD Thesis – “VchM – a DNA cytosine methyltransferase modulates the response of Vibrio cholerae to proteotoxic stress”',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/event/152156/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 4535152156,
size: 0.5,
source: 4535,
target: 152156,
});
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 98077,
label: 'André Filipe Paulino Carvalho',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/?post_type=member&p=98077',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 15215698077,
size: 0.5,
source: 152156,
target: 98077 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4535) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 1521564535,
size: 0.5,
source: 152156,
target: 4535 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4541) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 1521564541,
size: 0.5,
source: 152156,
target: 4541 });
// adding node
var x_node = Math.cos(2 * 8 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 8 * Math.PI / N) * 10;
g.nodes.push({
id: 138325,
label: 'EVENT: ! CANCELLED ! “Revisiting DNA transfer by bacterial conjugation at the cellular scale” – GENOMES and GENETICS DEPARTMENT SEMINAR',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/event/revisiting-dna-transfer-by-bacterial-conjugation-at-the-cellular-scale-genomes-and-genetics-department-seminar/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 4535138325,
size: 0.5,
source: 4535,
target: 138325,
});
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4535) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 1383254535,
size: 0.5,
source: 138325,
target: 4535 });
// adding node
var x_node = Math.cos(2 * 9 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 9 * Math.PI / N) * 10;
g.nodes.push({
id: 105173,
label: 'EVENT: “Caractérisation de la protéine RadD et identification des gènes essentiels en présence de faibles doses de tobramycine”',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/event/caracterisation-de-la-proteine-radd-et-identification-des-genes-essentiels-en-presence-de-faibles-doses-de-tobramycine-veronica-negro/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 4535105173,
size: 0.5,
source: 4535,
target: 105173,
});
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4541) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 1051734541,
size: 0.5,
source: 105173,
target: 4541 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4535) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 1051734535,
size: 0.5,
source: 105173,
target: 4535 });
// adding node
var x_node = Math.cos(2 * 10 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 10 * Math.PI / N) * 10;
g.nodes.push({
id: 67850,
label: 'PROJECT: Induction of stress responses and mutagenesis by low doses of antibiotics',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/project/induction-of-stress-responses-and-mutagenesis-by-low-doses-of-antibiotics/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 453567850,
size: 0.5,
source: 4535,
target: 67850,
});
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4541) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 678504541,
size: 0.5,
source: 67850,
target: 4541 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4535) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 678504535,
size: 0.5,
source: 67850,
target: 4535 });
// adding node
var x_node = Math.cos(2 * 11 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 11 * Math.PI / N) * 10;
g.nodes.push({
id: 6164,
label: 'TEAM: Bacterial Genome Plasticity',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/09/research.pasteur.fr_mazel-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/bacterial-genome-plasticity/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 45356164,
size: 0.5,
source: 4535,
target: 6164,
});
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4533,
label: 'Céline Loot',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/09/research.pasteur.fr_img_21712-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/celine-loot/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 61644533,
size: 0.5,
source: 6164,
target: 4533 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4535) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 61644535,
size: 0.5,
source: 6164,
target: 4535 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4532,
label: 'Marie-Eve Val',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/05/research_pasteur-marie-eve-val-marie-eve-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/marie-eve-kennedy-val/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 61644532,
size: 0.5,
source: 6164,
target: 4532 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4546) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 61644546,
size: 0.5,
source: 6164,
target: 4546 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 8489,
label: 'Magaly Ducos-Galand',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/09/research.pasteur.fr_img_1057-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/magaly-ducos-galand/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 61648489,
size: 0.5,
source: 6164,
target: 8489 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 98090,
label: 'Julia Bos',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2018/07/research_pasteur-picture1-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/fr-julia-bos/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 616498090,
size: 0.5,
source: 6164,
target: 98090 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 82238,
label: 'Jakub Czarnecki',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2017/01/research_pasteur-enjakub-czarneckifrjakub-czarnecki-czarnecki-jakub-web-ip-v2-2-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/jakub-czarnecki/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 616482238,
size: 0.5,
source: 6164,
target: 82238 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 183961,
label: 'Pedro Dorado Morales',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2022/07/research_pasteur-dorado-pedro-web-ip-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/pedro-dorado-morales/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 6164183961,
size: 0.5,
source: 6164,
target: 183961 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 190680) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 6164190680,
size: 0.5,
source: 6164,
target: 190680 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 190676,
label: 'Kevin Debatisse',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2022/11/research_pasteur-debatisse-kevin-web-ip-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/kevin-debatisse/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 6164190676,
size: 0.5,
source: 6164,
target: 190676 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 149222,
label: 'Théophile Niault',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2020/11/research_pasteur-theophile-niault-niault-theophile-1-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/theophile-niault/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 6164149222,
size: 0.5,
source: 6164,
target: 149222 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 175967,
label: 'Baptiste Darracq',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/member/baptiste-darracq/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 6164175967,
size: 0.5,
source: 6164,
target: 175967 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 175973) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 6164175973,
size: 0.5,
source: 6164,
target: 175973 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 175996,
label: 'Morgan Lambérioux',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2022/02/research_pasteur-lamberioux-morga-web-ip-150x150.jpeg',
page_url: 'https://research.pasteur.fr/en/member/morgan-lamberioux/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 6164175996,
size: 0.5,
source: 6164,
target: 175996 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 216519,
label: 'Noa Guzzi',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2024/01/research_pasteur-guzzi-noa-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/noa-guzzi/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 6164216519,
size: 0.5,
source: 6164,
target: 216519 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 68493,
label: 'Isabelle Hoffmann',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2016/04/research.pasteur.fr_isabelle-hoffmann-150x150.png',
page_url: 'https://research.pasteur.fr/en/member/hoffmann-isabelle/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 616468493,
size: 0.5,
source: 6164,
target: 68493 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4908,
label: 'Pierre Alexandr Kaminski',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_ha25-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/pierre-alexandr-kaminski/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 61644908,
size: 0.5,
source: 6164,
target: 4908 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 200087,
label: 'Sanne Klompe',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2023/04/research_pasteur-s.-klompe-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/sanne-klompe/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 6164200087,
size: 0.5,
source: 6164,
target: 200087 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4541) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 61644541,
size: 0.5,
source: 6164,
target: 4541 });
var s = new sigma({
//container: document.getElementById('graph-main'),
graph: g,
renderer: {
// IMPORTANT:
// This works only with the canvas renderer, so the
// renderer type set as "canvas" is necessary here.
container: document.getElementById('graph-main'),
type: 'canvas'
},
settings: {
minNodeSize: 6,
maxNodeSize: 35,
mouseWheelEnabled: false,
font: 'Montserrat',
labelThreshold:25,
borderSize:1,
defaultNodeBorderColor: '#999',
sideMargin:25,
}
});
// We first need to save the original colors of our
// nodes and edges, like this:
s.graph.nodes().forEach(function(n) {
n.originalColor = n.color;
});
s.graph.edges().forEach(function(e) {
e.originalColor = e.color;
});
// When a node is clicked, we check for each node
// if it is a neighbor of the clicked one. If not,
// we set its color as grey, and else, it takes its
// original color.
// We do the same for the edges, and we only keep
// edges that have both extremities colored.
s.bind('clickNode', function(e) {
var nodeId = e.data.node.id,
toKeep = s.graph.neighbors(nodeId);
toKeep[nodeId] = e.data.node;
s.graph.nodes().forEach(function(n) {
if (toKeep[n.id])
n.color = '#35a9f5';
else
n.color = '#dddddd';
});
s.graph.edges().forEach(function(e) {
if (toKeep[e.source] && toKeep[e.target])
e.color = '#35a9f5';
else
e.color = '#dddddd';
});
// Since the data has been modified, we need to
// call the refresh method to make the colors
// update effective.
s.refresh();
});
// When the stage is clicked, we just color each
// node and edge with its original color.
s.bind('clickStage', function(e) {
s.graph.nodes().forEach(function(n) {
n.color = n.originalColor;
});
s.graph.edges().forEach(function(e) {
e.color = e.originalColor;
});
// Same as in the previous event:
s.refresh();
});
s.bind("doubleClickNode", function (e) {
$("#canvas-wrap, .sigma-scene, .sigma-mouse").val();
ajax_load_page( e.data.node.page_url );
});
var c = s.camera;
s.bind("rightClickStage", function (e) {
sigma.misc.animation.camera(c, {
ratio: c.ratio * c.settings('zoomingRatio')
}, {
duration: 200
});
});
// Configure the noverlap layout:
var noverlapListener = s.configNoverlap({
nodeMargin: 10,
scaleNodes: 0.3,
gridSize: 1,
easing: 'quadraticInOut', // animation transition function
duration: 4000 // animation duration. Long here for the purposes of this example only
});
// Bind the events:
noverlapListener.bind('start stop interpolate', function(e) {
//console.log(e.type);
if(e.type === 'start') {
//console.time('noverlap');
}
if(e.type === 'interpolate') {
//console.timeEnd('noverlap');
}
});
// Start the layout:
s.startNoverlap();
//s.refresh();
// Initialize the dragNodes plugin:
var dragListener = sigma.plugins.dragNodes(s, s.renderers[0]);
dragListener.bind('startdrag', function(event) {
});
dragListener.bind('drag', function(event) {
});
dragListener.bind('drop', function(event) {
});
dragListener.bind('dragend', function(event) {
});