GUIDE
- Left-click and drag the background to move the graph
- Left-click and drag the nodes to reorganize
- Left-click a node to view first level connections
- Double left-click a node to navigate to its page
- Double left-click the background to zoom in
- Right-click the background to zoom out
sigma.utils.pkg('sigma.canvas.nodes');
sigma.canvas.nodes.image = (function() {
var _cache = {},
_loading = {},
_callbacks = {};
// Return the renderer itself:
var renderer = function(node, context, settings) {
var args = arguments,
prefix = settings('prefix') || '',
size = node[prefix + 'size'],
color = node.color || settings('defaultNodeColor'),
url = node.url;
if (_cache[url]) {
context.save();
// Draw the clipping disc:
context.beginPath();
context.arc(
node[prefix + 'x'],
node[prefix + 'y'],
node[prefix + 'size'],
0,
Math.PI * 2,
true
);
context.closePath();
context.clip();
// Draw the image
context.drawImage(
_cache[url],
node[prefix + 'x'] - size,
node[prefix + 'y'] - size,
2 * size,
2 * size
);
// Quit the "clipping mode":
context.restore();
// Draw the border:
context.beginPath();
context.arc(
node[prefix + 'x'],
node[prefix + 'y'],
node[prefix + 'size'],
0,
Math.PI * 2,
true
);
context.lineWidth = 1;
context.strokeStyle = node.color || settings('defaultNodeColor');
context.stroke();
} else {
sigma.canvas.nodes.image.cache(url);
sigma.canvas.nodes.def.apply(
sigma.canvas.nodes,
args
);
}
};
// Let's add a public method to cache images, to make it possible to
// preload images before the initial rendering:
renderer.cache = function(url, callback) {
if (callback)
_callbacks[url] = callback;
if (_loading[url])
return;
var img = new Image();
img.onload = function() {
_loading[url] = false;
_cache[url] = img;
if (_callbacks[url]) {
_callbacks[url].call(this, img);
delete _callbacks[url];
}
};
_loading[url] = true;
img.src = url;
};
return renderer;
})();
var i,
s,
o,
offset_left = 0.5,
N = 1,
E = 40,
C = 5,
d = 0.5,
cs = [],
g = {
nodes: [],
edges: []
};
if (!sigma.classes.graph.hasMethod('neighbors')){
sigma.classes.graph.addMethod('neighbors', function(nodeId) {
var k,
neighbors = {},
index = this.allNeighborsIndex[nodeId] || {};
for (k in index)
neighbors[k] = this.nodesIndex[k];
return neighbors;
});
}
//adding the central node
g.nodes.push({
id: 4351,
label: 'Ludovic Tailleux',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_ludovic-150x150.jpeg',
x: 0,
y: 0,
size: 30,
color: '#DDDDDD'
});
var biggest_node_size = 0;
N=6
// adding node
var x_node = Math.cos(2 * 0 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 0 * Math.PI / N) * 10;
g.nodes.push({
id: 166433,
label: 'COURSE: MOOC Tuberculosis',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2021/09/research_pasteur-mooc-tuberculosis-institutpasteur-28745-tuberculosis-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/course/mooc-tuberculosis/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 4351166433,
size: 0.5,
source: 4351,
target: 166433,
});
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 3994,
label: 'Fadel Sayes',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/10/research.pasteur.fr_20150928mip_6622--150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/fadel-sayes/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 1664333994,
size: 0.5,
source: 166433,
target: 3994 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4351) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 1664334351,
size: 0.5,
source: 166433,
target: 4351 });
// adding node
var x_node = Math.cos(2 * 1 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 1 * Math.PI / N) * 10;
g.nodes.push({
id: 106381,
label: 'EVENT: “Genetic and epigenetic determinants of population differences in immune response to infections” by Luis BARREIRO – Genomes and Genetics departemental seminar',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/event/genetic-and-epigenetic-determinants-of-population-differences-in-immune-response-to-infections-by-lluis-barreiro-genomes-and-genetics-departemental-seminar/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 4351106381,
size: 0.5,
source: 4351,
target: 106381,
});
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4351) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 1063814351,
size: 0.5,
source: 106381,
target: 4351 });
// adding node
var x_node = Math.cos(2 * 2 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 2 * Math.PI / N) * 10;
g.nodes.push({
id: 60105,
label: 'EVENT: EMBO Conference Tuberculosis 2016',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2016/03/research.pasteur.fr_tuberculosis2016-web-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/event/embo-conference-tuberculosis-2016/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 435160105,
size: 0.5,
source: 4351,
target: 60105,
});
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 3992,
label: 'Roland Brosch',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/12/research.pasteur.fr_roland1-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/roland-brosch/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 601053992,
size: 0.5,
source: 60105,
target: 3992 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 2487,
label: 'Pedro Alzari',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/03/palzari-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/pedro-alzari/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 601052487,
size: 0.5,
source: 60105,
target: 2487 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 3993,
label: 'Laleh Majlessi',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2017/12/research_pasteur-photo-lm-150x150.png',
page_url: 'https://research.pasteur.fr/en/member/laleh-majlessi/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 601053993,
size: 0.5,
source: 60105,
target: 3993 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 3915,
label: 'Marco Bellinzoni',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/05/research_pasteur-marco-bellinzoni-img-0074-2-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/marco-bellinzoni/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 601053915,
size: 0.5,
source: 60105,
target: 3915 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 6368,
label: 'Giulia Manina',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/05/research_pasteur-giulia-manina-giulia-manina-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/giulia-manina/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 601056368,
size: 0.5,
source: 60105,
target: 6368 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4351) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 601054351,
size: 0.5,
source: 60105,
target: 4351 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 3995,
label: 'Roxane Simeone',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/11/research.pasteur.fr_20151029mip_7088-3-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/roxane-simeone/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 601053995,
size: 0.5,
source: 60105,
target: 3995 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4009,
label: 'Carmen Buchrieser',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/06/research.pasteur.fr_carmen1-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/carmen-buchrieser/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 601054009,
size: 0.5,
source: 60105,
target: 4009 });
// adding node
var x_node = Math.cos(2 * 3 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 3 * Math.PI / N) * 10;
g.nodes.push({
id: 30092,
label: 'PROJECT: Identifying host genetic factors that affect the interplay between M. tuberculosis and human cells',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_tailleux_dendritic-cells-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/project/identifying-host-genetic-factors-that-affect-the-interplay-between-m-tuberculosis-and-human-cells/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 435130092,
size: 0.5,
source: 4351,
target: 30092,
});
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4351) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 300924351,
size: 0.5,
source: 30092,
target: 4351 });
// adding node
var x_node = Math.cos(2 * 4 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 4 * Math.PI / N) * 10;
g.nodes.push({
id: 28449,
label: 'PROJECT: Nanotherapeutics for Antibiotic Resistant Emerging Bacterial pathogens',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/project/nanotherapeutics-for-antibiotic-resistant-emerging-bacterial-pathogens/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 435128449,
size: 0.5,
source: 4351,
target: 28449,
});
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4351) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 284494351,
size: 0.5,
source: 28449,
target: 4351 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4349,
label: 'Maria Virginia Buchieri',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_buchieri-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/maria-virginia-buchieri/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 284494349,
size: 0.5,
source: 28449,
target: 4349 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4348,
label: 'Noelia Alonso Rodriguez',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_alonso-rodriguez-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/noelia-alonso-rodriguez/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 284494348,
size: 0.5,
source: 28449,
target: 4348 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4353,
label: 'Mena Cimino',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_cimino-150x150.jpeg',
page_url: 'https://research.pasteur.fr/en/member/mena-cimino/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 284494353,
size: 0.5,
source: 28449,
target: 4353 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 8392,
label: 'Sandrine Favre-Rochex',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_favre-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/sandrine-favre-rochex/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 284498392,
size: 0.5,
source: 28449,
target: 8392 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 8393,
label: 'Patricia Charles',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_charles-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/patricia-charles/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 284498393,
size: 0.5,
source: 28449,
target: 8393 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4350,
label: 'Brigitte Gicquel',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_gicquel-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/brigitte-gicquel/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 284494350,
size: 0.5,
source: 28449,
target: 4350 });
// adding node
var x_node = Math.cos(2 * 5 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 5 * Math.PI / N) * 10;
g.nodes.push({
id: 6163,
label: 'TEAM: Integrated Mycobacterial Pathogenomics',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/06/research.pasteur.fr_tuberculosis2-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/integrated-mycobacterial-pathogenomics/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 43516163,
size: 0.5,
source: 4351,
target: 6163,
});
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 8308,
label: 'Laurence Langlais',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2016/06/research.pasteur.fr_laurencelanglais-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/laurence-langlais/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 61638308,
size: 0.5,
source: 6163,
target: 8308 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4351) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 61634351,
size: 0.5,
source: 6163,
target: 4351 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 3995) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 61633995,
size: 0.5,
source: 6163,
target: 3995 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 3994) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 61633994,
size: 0.5,
source: 6163,
target: 3994 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 3998,
label: 'Alexandre Pawlik',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/10/research.pasteur.fr_20150928mip_6643--150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/alexandre-pawlik/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 61633998,
size: 0.5,
source: 6163,
target: 3998 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 8470,
label: 'Wafa Zouaoui-Frigui',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/10/research.pasteur.fr_20150925mip_6609--150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/wafa-zouaoui-frigui/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 61638470,
size: 0.5,
source: 6163,
target: 8470 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 21957,
label: 'Mickael Orgeur',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/member/mickael-orgeur/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 616321957,
size: 0.5,
source: 6163,
target: 21957 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 173645,
label: 'Marc Settelen',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/member/marc-settelen/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 6163173645,
size: 0.5,
source: 6163,
target: 173645 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 194208,
label: 'Cecile Tillier',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2023/01/research_pasteur-cecile-tillier-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/cecile-tillier/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 6163194208,
size: 0.5,
source: 6163,
target: 194208 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 206436,
label: 'Blanca Bernabeu Vilaplana',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2023/08/research_pasteur-photo-villablanca-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/blanca-bernabeu-vilaplana/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 6163206436,
size: 0.5,
source: 6163,
target: 206436 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 8471,
label: 'Véronique Tatot',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/10/research.pasteur.fr_20151022mip_6793--150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/veronique-tatot/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 61638471,
size: 0.5,
source: 6163,
target: 8471 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 8473,
label: 'Françoise Guinandie',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/12/research.pasteur.fr_20151022mip_6802--150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/francoise-guinandie/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 61638473,
size: 0.5,
source: 6163,
target: 8473 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 221425,
label: 'Steven Barolin',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/member/steven-barolin/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 6163221425,
size: 0.5,
source: 6163,
target: 221425 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 3992) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 61633992,
size: 0.5,
source: 6163,
target: 3992 });
var s = new sigma({
//container: document.getElementById('graph-main'),
graph: g,
renderer: {
// IMPORTANT:
// This works only with the canvas renderer, so the
// renderer type set as "canvas" is necessary here.
container: document.getElementById('graph-main'),
type: 'canvas'
},
settings: {
minNodeSize: 6,
maxNodeSize: 35,
mouseWheelEnabled: false,
font: 'Montserrat',
labelThreshold:25,
borderSize:1,
defaultNodeBorderColor: '#999',
sideMargin:25,
}
});
// We first need to save the original colors of our
// nodes and edges, like this:
s.graph.nodes().forEach(function(n) {
n.originalColor = n.color;
});
s.graph.edges().forEach(function(e) {
e.originalColor = e.color;
});
// When a node is clicked, we check for each node
// if it is a neighbor of the clicked one. If not,
// we set its color as grey, and else, it takes its
// original color.
// We do the same for the edges, and we only keep
// edges that have both extremities colored.
s.bind('clickNode', function(e) {
var nodeId = e.data.node.id,
toKeep = s.graph.neighbors(nodeId);
toKeep[nodeId] = e.data.node;
s.graph.nodes().forEach(function(n) {
if (toKeep[n.id])
n.color = '#35a9f5';
else
n.color = '#dddddd';
});
s.graph.edges().forEach(function(e) {
if (toKeep[e.source] && toKeep[e.target])
e.color = '#35a9f5';
else
e.color = '#dddddd';
});
// Since the data has been modified, we need to
// call the refresh method to make the colors
// update effective.
s.refresh();
});
// When the stage is clicked, we just color each
// node and edge with its original color.
s.bind('clickStage', function(e) {
s.graph.nodes().forEach(function(n) {
n.color = n.originalColor;
});
s.graph.edges().forEach(function(e) {
e.color = e.originalColor;
});
// Same as in the previous event:
s.refresh();
});
s.bind("doubleClickNode", function (e) {
$("#canvas-wrap, .sigma-scene, .sigma-mouse").val();
ajax_load_page( e.data.node.page_url );
});
var c = s.camera;
s.bind("rightClickStage", function (e) {
sigma.misc.animation.camera(c, {
ratio: c.ratio * c.settings('zoomingRatio')
}, {
duration: 200
});
});
// Configure the noverlap layout:
var noverlapListener = s.configNoverlap({
nodeMargin: 10,
scaleNodes: 0.3,
gridSize: 1,
easing: 'quadraticInOut', // animation transition function
duration: 4000 // animation duration. Long here for the purposes of this example only
});
// Bind the events:
noverlapListener.bind('start stop interpolate', function(e) {
//console.log(e.type);
if(e.type === 'start') {
//console.time('noverlap');
}
if(e.type === 'interpolate') {
//console.timeEnd('noverlap');
}
});
// Start the layout:
s.startNoverlap();
//s.refresh();
// Initialize the dragNodes plugin:
var dragListener = sigma.plugins.dragNodes(s, s.renderers[0]);
dragListener.bind('startdrag', function(event) {
});
dragListener.bind('drag', function(event) {
});
dragListener.bind('drop', function(event) {
});
dragListener.bind('dragend', function(event) {
});