GUIDE
- Left-click and drag the background to move the graph
- Left-click and drag the nodes to reorganize
- Left-click a node to view first level connections
- Double left-click a node to navigate to its page
- Double left-click the background to zoom in
- Right-click the background to zoom out
sigma.utils.pkg('sigma.canvas.nodes');
sigma.canvas.nodes.image = (function() {
var _cache = {},
_loading = {},
_callbacks = {};
// Return the renderer itself:
var renderer = function(node, context, settings) {
var args = arguments,
prefix = settings('prefix') || '',
size = node[prefix + 'size'],
color = node.color || settings('defaultNodeColor'),
url = node.url;
if (_cache[url]) {
context.save();
// Draw the clipping disc:
context.beginPath();
context.arc(
node[prefix + 'x'],
node[prefix + 'y'],
node[prefix + 'size'],
0,
Math.PI * 2,
true
);
context.closePath();
context.clip();
// Draw the image
context.drawImage(
_cache[url],
node[prefix + 'x'] - size,
node[prefix + 'y'] - size,
2 * size,
2 * size
);
// Quit the "clipping mode":
context.restore();
// Draw the border:
context.beginPath();
context.arc(
node[prefix + 'x'],
node[prefix + 'y'],
node[prefix + 'size'],
0,
Math.PI * 2,
true
);
context.lineWidth = 1;
context.strokeStyle = node.color || settings('defaultNodeColor');
context.stroke();
} else {
sigma.canvas.nodes.image.cache(url);
sigma.canvas.nodes.def.apply(
sigma.canvas.nodes,
args
);
}
};
// Let's add a public method to cache images, to make it possible to
// preload images before the initial rendering:
renderer.cache = function(url, callback) {
if (callback)
_callbacks[url] = callback;
if (_loading[url])
return;
var img = new Image();
img.onload = function() {
_loading[url] = false;
_cache[url] = img;
if (_callbacks[url]) {
_callbacks[url].call(this, img);
delete _callbacks[url];
}
};
_loading[url] = true;
img.src = url;
};
return renderer;
})();
var i,
s,
o,
offset_left = 0.5,
N = 1,
E = 40,
C = 5,
d = 0.5,
cs = [],
g = {
nodes: [],
edges: []
};
if (!sigma.classes.graph.hasMethod('neighbors')){
sigma.classes.graph.addMethod('neighbors', function(nodeId) {
var k,
neighbors = {},
index = this.allNeighborsIndex[nodeId] || {};
for (k in index)
neighbors[k] = this.nodesIndex[k];
return neighbors;
});
}
//adding the central node
g.nodes.push({
id: 4214,
label: 'Bruno Dupuy',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/09/research.pasteur.fr_bruno_id-150x150.jpg',
x: 0,
y: 0,
size: 30,
color: '#DDDDDD'
});
var biggest_node_size = 0;
N=15
// adding node
var x_node = Math.cos(2 * 0 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 0 * Math.PI / N) * 10;
g.nodes.push({
id: 208795,
label: 'PROJECT: The Microbiology Chronicles',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/project/208795/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 4214208795,
size: 0.5,
source: 4214,
target: 208795,
});
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 134269,
label: 'Rebecca Pavillard',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2019/10/research_pasteur-pavillard-150x150.png',
page_url: 'https://research.pasteur.fr/en/member/rebecca-pavillard/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 208795134269,
size: 0.5,
source: 208795,
target: 134269 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 157672,
label: 'Olivier Cordin',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/member/olivier-cordin/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 208795157672,
size: 0.5,
source: 208795,
target: 157672 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 103214,
label: 'Frédéric Barras',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2018/04/research_pasteur-f-barras-1-150x150.png',
page_url: 'https://research.pasteur.fr/en/member/frederic-barras/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 208795103214,
size: 0.5,
source: 208795,
target: 103214 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4214) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 2087954214,
size: 0.5,
source: 208795,
target: 4214 });
// adding node
var x_node = Math.cos(2 * 1 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 1 * Math.PI / N) * 10;
g.nodes.push({
id: 186779,
label: 'NEWS: Highlighted paper: “c-di-AMP signaling is required for bile salt resistance, osmotolerance, and long-term host colonization by Clostridioides difficile”, Oberkampf et al. Science Signalling; Sept 2022; Pathogenesis of Bacterial anaerobes Unit; Microbiology Dpt.',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/news/highlighted-paper-c-di-amp-signaling-is-required-for-bile-salt-resistance-osmotolerance-and-long-term-host-colonization-by-clostridioides-difficile-oberkampf-et-al-science-signalling-sept-20/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 4214186779,
size: 0.5,
source: 4214,
target: 186779,
});
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 8590,
label: 'Marine Oberkampf De Dabrun',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_ha10-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/marine-oberkampf-de-dabrun/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 1867798590,
size: 0.5,
source: 186779,
target: 8590 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4214) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 1867794214,
size: 0.5,
source: 186779,
target: 4214 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4215,
label: 'Johann Peltier',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/?post_type=member&p=4215',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 1867794215,
size: 0.5,
source: 186779,
target: 4215 });
// adding node
var x_node = Math.cos(2 * 2 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 2 * Math.PI / N) * 10;
g.nodes.push({
id: 172770,
label: 'NEWS: Highlighted publication: “In vivo commensal control of Clostridioides difficile virulence” Girinathan et al., Cell Host ; Microbes, Pathenogenesis of Bacterial Anaerobes team',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/news/highlighted-publication-in-vivo-commensal-control-of-clostridioides-difficile-virulence-girinathan-et-al-cell-host-microbes-pathenogenesis-of-bacterial-anaerobes-team/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 4214172770,
size: 0.5,
source: 4214,
target: 172770,
});
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4215) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 1727704215,
size: 0.5,
source: 172770,
target: 4215 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4214) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 1727704214,
size: 0.5,
source: 172770,
target: 4214 });
// adding node
var x_node = Math.cos(2 * 3 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 3 * Math.PI / N) * 10;
g.nodes.push({
id: 122746,
label: 'PROJECT: Biofilms formed by anaerobes',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2019/02/research_pasteur-anaerobiofilm-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/project/biofilms-formed-by-anaerobes/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 4214122746,
size: 0.5,
source: 4214,
target: 122746,
});
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 77657,
label: '',
type: 'image',
url: '',
page_url: '',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 12274677657,
size: 0.5,
source: 122746,
target: 77657 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4344,
label: 'Bianca Audrain',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/09/research.pasteur.fr_bianca2-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/bianca-audrain/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 1227464344,
size: 0.5,
source: 122746,
target: 4344 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 120932,
label: 'Stanislas Thiriet-Rupert',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2019/07/research_pasteur-stanislas2-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/fr-stanislas-thiriet-rupert/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 122746120932,
size: 0.5,
source: 122746,
target: 120932 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 119197,
label: '',
type: 'image',
url: '',
page_url: '',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 122746119197,
size: 0.5,
source: 122746,
target: 119197 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4214) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 1227464214,
size: 0.5,
source: 122746,
target: 4214 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4337,
label: 'Jean-Marc Ghigo',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2018/09/research_pasteur-ghigo-jean-marc-recad.lg_-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/jean-marc-ghigo/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 1227464337,
size: 0.5,
source: 122746,
target: 4337 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4335,
label: 'Christophe Beloin',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/09/research.pasteur.fr_christophe2-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/christophe-beloin/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 1227464335,
size: 0.5,
source: 122746,
target: 4335 });
// adding node
var x_node = Math.cos(2 * 4 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 4 * Math.PI / N) * 10;
g.nodes.push({
id: 77181,
label: 'PROJECT: Prophage elements as a significant source of genetic diversity among epidemic C. difficile 027 strains',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2016/09/research.pasteur.fr_prophage-027-150x150.png',
page_url: 'https://research.pasteur.fr/en/project/prophage-elements-as-a-significant-source-of-genetic-diversity-among-epidemic-c-difficile-027-strains/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 421477181,
size: 0.5,
source: 4214,
target: 77181,
});
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 77046,
label: 'Julian Garneau',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/?post_type=member&p=77046',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 7718177046,
size: 0.5,
source: 77181,
target: 77046 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 3957,
label: 'David Bikard',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2016/01/research.pasteur.fr_photo_cropped-1-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/david-bikard/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 771813957,
size: 0.5,
source: 77181,
target: 3957 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 3959,
label: 'Florence Depardieu',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_fig1-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/florence-depardieu/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 771813959,
size: 0.5,
source: 77181,
target: 3959 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4214) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 771814214,
size: 0.5,
source: 77181,
target: 4214 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4219,
label: 'Marc Monot',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/08/research.pasteur.fr_marc_icone-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/marc-monot/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 771814219,
size: 0.5,
source: 77181,
target: 4219 });
// adding node
var x_node = Math.cos(2 * 5 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 5 * Math.PI / N) * 10;
g.nodes.push({
id: 77157,
label: 'COURSE: Workshop: Bacterial RNAseq',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2016/09/research.pasteur.fr_workshop-bacterial-rnaseq_2016-150x150.png',
page_url: 'https://research.pasteur.fr/en/course/workshop-bacterial-rnaseq/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 421477157,
size: 0.5,
source: 4214,
target: 77157,
});
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4219) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 771574219,
size: 0.5,
source: 77157,
target: 4219 });
//check if content already exist
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}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 160642,
label: 'Auriane Monestier',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2021/06/research_pasteur-auriane-monestier-screenshot-20231213-145455-gallery-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/auriane-monestier/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 6127160642,
size: 0.5,
source: 6127,
target: 160642 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 167106,
label: 'Léo Caulat',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2021/09/research_pasteur-leo-caulat-031219-0276-e1631795714932-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/leo-caulat/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 6127167106,
size: 0.5,
source: 6127,
target: 167106 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 192136,
label: 'Eva Chatonnat',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2022/12/research_pasteur-eva-chatonnat-unknown-1-150x150.jpeg',
page_url: 'https://research.pasteur.fr/en/member/eva-chatonnat/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 6127192136,
size: 0.5,
source: 6127,
target: 192136 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 8278,
label: 'Aline Crouzols',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2016/02/research.pasteur.fr_aline-crouzols-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/aline-crouzols/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 61278278,
size: 0.5,
source: 6127,
target: 8278 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 213963,
label: 'Aurélie Lotoux',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/member/aurelie-lotoux/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 6127213963,
size: 0.5,
source: 6127,
target: 213963 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4214) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 61274214,
size: 0.5,
source: 6127,
target: 4214 });
// adding node
var x_node = Math.cos(2 * 12 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 12 * Math.PI / N) * 10;
g.nodes.push({
id: 22,
label: 'DEPARTMENT: Microbiology',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/06/research.pasteur.fr_microbiology-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/department/microbiology/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 421422,
size: 0.5,
source: 4214,
target: 22,
});
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 193087,
label: 'Henna Maulaboksh',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/member/henna-maulaboksh/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 22193087,
size: 0.5,
source: 22,
target: 193087 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 157672) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 22157672,
size: 0.5,
source: 22,
target: 157672 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 134269) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 22134269,
size: 0.5,
source: 22,
target: 134269 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 103214) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 22103214,
size: 0.5,
source: 22,
target: 103214 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4214) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 224214,
size: 0.5,
source: 22,
target: 4214 });
// adding node
var x_node = Math.cos(2 * 13 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 13 * Math.PI / N) * 10;
g.nodes.push({
id: 47783,
label: 'PROJECT: Control of toxin synthesis and secretion in Clostridium difficile',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/09/research.pasteur.fr_projet_toxin-regulation1-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/project/c-difficile-toxin-synthesis-and-secretion/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 421447783,
size: 0.5,
source: 4214,
target: 47783,
});
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4218,
label: '',
type: 'image',
url: '',
page_url: '',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 477834218,
size: 0.5,
source: 47783,
target: 4218 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4219) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 477834219,
size: 0.5,
source: 47783,
target: 4219 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 32993,
label: '',
type: 'image',
url: '',
page_url: '',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 4778332993,
size: 0.5,
source: 47783,
target: 32993 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4213) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 477834213,
size: 0.5,
source: 47783,
target: 4213 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4211) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 477834211,
size: 0.5,
source: 47783,
target: 4211 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 127036,
label: 'Revathi Govind',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2019/05/research_pasteur-govind-150x150.png',
page_url: 'https://research.pasteur.fr/en/member/revathi-govind/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 47783127036,
size: 0.5,
source: 47783,
target: 127036 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 127043,
label: '',
type: 'image',
url: '',
page_url: '',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 47783127043,
size: 0.5,
source: 47783,
target: 127043 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4214) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 477834214,
size: 0.5,
source: 47783,
target: 4214 });
// adding node
var x_node = Math.cos(2 * 14 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 14 * Math.PI / N) * 10;
g.nodes.push({
id: 33026,
label: 'PROJECT: Pathogenomic analysis of high potential virulent strains of C. difficile',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2009/08/research.pasteur.fr_era-net-pathogenomics-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/project/era-net-pathogenomics/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 421433026,
size: 0.5,
source: 4214,
target: 33026,
});
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4219) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 330264219,
size: 0.5,
source: 33026,
target: 4219 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 32990) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 3302632990,
size: 0.5,
source: 33026,
target: 32990 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 48659,
label: '',
type: 'image',
url: '',
page_url: '',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 3302648659,
size: 0.5,
source: 33026,
target: 48659 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4214) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 330264214,
size: 0.5,
source: 33026,
target: 4214 });
var s = new sigma({
//container: document.getElementById('graph-main'),
graph: g,
renderer: {
// IMPORTANT:
// This works only with the canvas renderer, so the
// renderer type set as "canvas" is necessary here.
container: document.getElementById('graph-main'),
type: 'canvas'
},
settings: {
minNodeSize: 6,
maxNodeSize: 35,
mouseWheelEnabled: false,
font: 'Montserrat',
labelThreshold:25,
borderSize:1,
defaultNodeBorderColor: '#999',
sideMargin:25,
}
});
// We first need to save the original colors of our
// nodes and edges, like this:
s.graph.nodes().forEach(function(n) {
n.originalColor = n.color;
});
s.graph.edges().forEach(function(e) {
e.originalColor = e.color;
});
// When a node is clicked, we check for each node
// if it is a neighbor of the clicked one. If not,
// we set its color as grey, and else, it takes its
// original color.
// We do the same for the edges, and we only keep
// edges that have both extremities colored.
s.bind('clickNode', function(e) {
var nodeId = e.data.node.id,
toKeep = s.graph.neighbors(nodeId);
toKeep[nodeId] = e.data.node;
s.graph.nodes().forEach(function(n) {
if (toKeep[n.id])
n.color = '#35a9f5';
else
n.color = '#dddddd';
});
s.graph.edges().forEach(function(e) {
if (toKeep[e.source] && toKeep[e.target])
e.color = '#35a9f5';
else
e.color = '#dddddd';
});
// Since the data has been modified, we need to
// call the refresh method to make the colors
// update effective.
s.refresh();
});
// When the stage is clicked, we just color each
// node and edge with its original color.
s.bind('clickStage', function(e) {
s.graph.nodes().forEach(function(n) {
n.color = n.originalColor;
});
s.graph.edges().forEach(function(e) {
e.color = e.originalColor;
});
// Same as in the previous event:
s.refresh();
});
s.bind("doubleClickNode", function (e) {
$("#canvas-wrap, .sigma-scene, .sigma-mouse").val();
ajax_load_page( e.data.node.page_url );
});
var c = s.camera;
s.bind("rightClickStage", function (e) {
sigma.misc.animation.camera(c, {
ratio: c.ratio * c.settings('zoomingRatio')
}, {
duration: 200
});
});
// Configure the noverlap layout:
var noverlapListener = s.configNoverlap({
nodeMargin: 10,
scaleNodes: 0.3,
gridSize: 1,
easing: 'quadraticInOut', // animation transition function
duration: 4000 // animation duration. Long here for the purposes of this example only
});
// Bind the events:
noverlapListener.bind('start stop interpolate', function(e) {
//console.log(e.type);
if(e.type === 'start') {
//console.time('noverlap');
}
if(e.type === 'interpolate') {
//console.timeEnd('noverlap');
}
});
// Start the layout:
s.startNoverlap();
//s.refresh();
// Initialize the dragNodes plugin:
var dragListener = sigma.plugins.dragNodes(s, s.renderers[0]);
dragListener.bind('startdrag', function(event) {
});
dragListener.bind('drag', function(event) {
});
dragListener.bind('drop', function(event) {
});
dragListener.bind('dragend', function(event) {
});