GUIDE
- Left-click and drag the background to move the graph
- Left-click and drag the nodes to reorganize
- Left-click a node to view first level connections
- Double left-click a node to navigate to its page
- Double left-click the background to zoom in
- Right-click the background to zoom out
sigma.utils.pkg('sigma.canvas.nodes');
sigma.canvas.nodes.image = (function() {
var _cache = {},
_loading = {},
_callbacks = {};
// Return the renderer itself:
var renderer = function(node, context, settings) {
var args = arguments,
prefix = settings('prefix') || '',
size = node[prefix + 'size'],
color = node.color || settings('defaultNodeColor'),
url = node.url;
if (_cache[url]) {
context.save();
// Draw the clipping disc:
context.beginPath();
context.arc(
node[prefix + 'x'],
node[prefix + 'y'],
node[prefix + 'size'],
0,
Math.PI * 2,
true
);
context.closePath();
context.clip();
// Draw the image
context.drawImage(
_cache[url],
node[prefix + 'x'] - size,
node[prefix + 'y'] - size,
2 * size,
2 * size
);
// Quit the "clipping mode":
context.restore();
// Draw the border:
context.beginPath();
context.arc(
node[prefix + 'x'],
node[prefix + 'y'],
node[prefix + 'size'],
0,
Math.PI * 2,
true
);
context.lineWidth = 1;
context.strokeStyle = node.color || settings('defaultNodeColor');
context.stroke();
} else {
sigma.canvas.nodes.image.cache(url);
sigma.canvas.nodes.def.apply(
sigma.canvas.nodes,
args
);
}
};
// Let's add a public method to cache images, to make it possible to
// preload images before the initial rendering:
renderer.cache = function(url, callback) {
if (callback)
_callbacks[url] = callback;
if (_loading[url])
return;
var img = new Image();
img.onload = function() {
_loading[url] = false;
_cache[url] = img;
if (_callbacks[url]) {
_callbacks[url].call(this, img);
delete _callbacks[url];
}
};
_loading[url] = true;
img.src = url;
};
return renderer;
})();
var i,
s,
o,
offset_left = 0.5,
N = 1,
E = 40,
C = 5,
d = 0.5,
cs = [],
g = {
nodes: [],
edges: []
};
if (!sigma.classes.graph.hasMethod('neighbors')){
sigma.classes.graph.addMethod('neighbors', function(nodeId) {
var k,
neighbors = {},
index = this.allNeighborsIndex[nodeId] || {};
for (k in index)
neighbors[k] = this.nodesIndex[k];
return neighbors;
});
}
//adding the central node
g.nodes.push({
id: 4207,
label: 'Alexandre Alanio',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2018/03/research_pasteur-alanio_2018_88830011-copie-1-150x150.jpeg',
x: 0,
y: 0,
size: 30,
color: '#DDDDDD'
});
var biggest_node_size = 0;
N=12
// adding node
var x_node = Math.cos(2 * 0 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 0 * Math.PI / N) * 10;
g.nodes.push({
id: 207660,
label: 'NEWS: Congratulation to Aude Sturny-Leclère and her colleagues for obtaining an ANRS Clinical Project Grant',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/news/congratulation-to-aude-sturny-leclere-and-her-colleagues-for-obtaining-an-anrs-clinical-project-grant/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 4207207660,
size: 0.5,
source: 4207,
target: 207660,
});
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 8554,
label: 'Aude Sturny-Leclere',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_asl-150x150.png',
page_url: 'https://research.pasteur.fr/en/member/aude-sturny-leclere/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 2076608554,
size: 0.5,
source: 207660,
target: 8554 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 55986,
label: 'Fanny Lanternier',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2018/07/research_pasteur-fanny1-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/fanny-lanternier/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 20766055986,
size: 0.5,
source: 207660,
target: 55986 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4209,
label: 'Dea Garcia-Hermoso',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_dgh-150x150.png',
page_url: 'https://research.pasteur.fr/en/member/dea-garcia-hermoso/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 2076604209,
size: 0.5,
source: 207660,
target: 4209 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4207) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 2076604207,
size: 0.5,
source: 207660,
target: 4207 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4203,
label: 'Olivier Lortholary',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_sans-titre-150x150.png',
page_url: 'https://research.pasteur.fr/en/member/olivier-lortholary/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 2076604203,
size: 0.5,
source: 207660,
target: 4203 });
// adding node
var x_node = Math.cos(2 * 1 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 1 * Math.PI / N) * 10;
g.nodes.push({
id: 193218,
label: 'TEAM: Translational Mycology',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2023/01/research_pasteur-mycologie-translationnelle-bandeau-a-alanio-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/translational-mycology/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 4207193218,
size: 0.5,
source: 4207,
target: 193218,
});
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 8554) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 1932188554,
size: 0.5,
source: 193218,
target: 8554 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 181816,
label: 'Ruchi Agrawal',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/member/ruchi-agrawal/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 193218181816,
size: 0.5,
source: 193218,
target: 181816 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 55986) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 19321855986,
size: 0.5,
source: 193218,
target: 55986 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4203) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 1932184203,
size: 0.5,
source: 193218,
target: 4203 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4208,
label: 'Marie Desnos-Ollivier',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_mdo-150x150.png',
page_url: 'https://research.pasteur.fr/en/member/marie-desnos-ollivier/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 1932184208,
size: 0.5,
source: 193218,
target: 4208 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4209) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 1932184209,
size: 0.5,
source: 193218,
target: 4209 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 156796,
label: 'Théo Ferreira',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/member/theo-ferreira/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 193218156796,
size: 0.5,
source: 193218,
target: 156796 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4207) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 1932184207,
size: 0.5,
source: 193218,
target: 4207 });
// adding node
var x_node = Math.cos(2 * 2 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 2 * Math.PI / N) * 10;
g.nodes.push({
id: 176513,
label: 'NEWS: Congratulation to Aude Sturny-Leclère and colleagues for being granted a Contrat d’initiation by the ANRS for their project “Evaluation of new tools for the diagnostic of histoplasmosis”',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/news/congratulation-to-aude-stury-leclere-and-colleagues-for-being-granted-a-contrat-dinitiation-by-the-anrs-for-their-project-evaluation-of-new-tools-for-the-diagnostic-of-histoplasmosis/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 4207176513,
size: 0.5,
source: 4207,
target: 176513,
});
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 8554) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 1765138554,
size: 0.5,
source: 176513,
target: 8554 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4209) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 1765134209,
size: 0.5,
source: 176513,
target: 4209 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4207) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 1765134207,
size: 0.5,
source: 176513,
target: 4207 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4203) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 1765134203,
size: 0.5,
source: 176513,
target: 4203 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 55986) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 17651355986,
size: 0.5,
source: 176513,
target: 55986 });
// adding node
var x_node = Math.cos(2 * 3 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 3 * Math.PI / N) * 10;
g.nodes.push({
id: 174832,
label: 'NEWS: Highlighted Publication: “Combination of mycological criteria: a better surrogate to identify COVID-19 associated pulmonary aspergillosis patients and evaluate prognosis?” Dellière et al., J. Clin Microbiol, Molecular Mycology team',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/news/highlighted-publication-combination-of-mycological-criteria-a-better-surrogate-to-identify-covid-19-associated-pulmonary-aspergillosis-patients-and-evaluate-prognosis-delliere-et-al-j-clin-m/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 4207174832,
size: 0.5,
source: 4207,
target: 174832,
});
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 144391,
label: 'Sarah Dellière',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2020/07/research_pasteur-id-eccmid-2019-copie-2-150x150.jpeg',
page_url: 'https://research.pasteur.fr/en/member/sarah-delliere/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 174832144391,
size: 0.5,
source: 174832,
target: 144391 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 8551,
label: 'Stéphane Bretagne',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_sb-150x150.png',
page_url: 'https://research.pasteur.fr/en/member/stephane-bretagne/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 1748328551,
size: 0.5,
source: 174832,
target: 8551 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4207) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 1748324207,
size: 0.5,
source: 174832,
target: 4207 });
// adding node
var x_node = Math.cos(2 * 4 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 4 * Math.PI / N) * 10;
g.nodes.push({
id: 166778,
label: 'COURSE: MOOC Medical Mycology',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2021/09/research_pasteur-mooc-viruses-and-human-cancers-image-principale-mooc-medical-mycology-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/course/mooc-medical-mycology/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 4207166778,
size: 0.5,
source: 4207,
target: 166778,
});
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4203) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 1667784203,
size: 0.5,
source: 166778,
target: 4203 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4209) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 1667784209,
size: 0.5,
source: 166778,
target: 4209 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4443,
label: 'Vishu Kumar Aimanianda Bopaiah',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2018/11/research_pasteur-photo-4cm-essai-2-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/vishu-kumar-aimanianda-bopaiah/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 1667784443,
size: 0.5,
source: 166778,
target: 4443 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4207) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 1667784207,
size: 0.5,
source: 166778,
target: 4207 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4208) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 1667784208,
size: 0.5,
source: 166778,
target: 4208 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 8551) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 1667788551,
size: 0.5,
source: 166778,
target: 8551 });
// adding node
var x_node = Math.cos(2 * 5 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 5 * Math.PI / N) * 10;
g.nodes.push({
id: 163826,
label: 'NEWS: ANR PRC call : Congratulations to Guilhem Janbon, Iuliana Ene and Alexandre Alanio for their successful project proposal “ResistEV”',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/news/anr-prc-call-congratulation-to-guilhem-janbon-iuliana-one-and-alexandre-alanio-for-their-successful-project-proposal-resistev/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 4207163826,
size: 0.5,
source: 4207,
target: 163826,
});
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4109,
label: 'Guilhem Janbon',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2017/10/research_pasteur-img_0255r-2-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/guilhem-janbon/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 1638264109,
size: 0.5,
source: 163826,
target: 4109 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 152955,
label: 'Iuliana Ene',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2021/01/research_pasteur-iuliana-ene-ene-iuliana-1-copy-scaled-e1612802810122-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/iuliana-ene/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 163826152955,
size: 0.5,
source: 163826,
target: 152955 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4207) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 1638264207,
size: 0.5,
source: 163826,
target: 4207 });
// adding node
var x_node = Math.cos(2 * 6 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 6 * Math.PI / N) * 10;
g.nodes.push({
id: 120206,
label: 'PROJECT: Improve molecular methods to detect Histoplasma capsulatum in humans',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2019/01/research_pasteur-25082009-histoplasma-capsulatum-giemsa-palais-01-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/project/improve-molecular-methods-to-detect-histoplasma-capsulatum-in-humans/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
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size: 0.5,
source: 4207,
target: 120206,
});
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 8554) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 1202068554,
size: 0.5,
source: 120206,
target: 8554 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 8551) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 1202068551,
size: 0.5,
source: 120206,
target: 8551 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4203) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 1202064203,
size: 0.5,
source: 120206,
target: 4203 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4209) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 1202064209,
size: 0.5,
source: 120206,
target: 4209 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4207) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 1202064207,
size: 0.5,
source: 120206,
target: 4207 });
// adding node
var x_node = Math.cos(2 * 7 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 7 * Math.PI / N) * 10;
g.nodes.push({
id: 120199,
label: 'PROJECT: Understanding the genesis of the Titan cells in Cryptococcus neoformans',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/project/understanding-the-genesis-of-the-titan-cells-in-cryptococcus-neoformans/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 4207120199,
size: 0.5,
source: 4207,
target: 120199,
});
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 8554) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 1201998554,
size: 0.5,
source: 120199,
target: 8554 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4207) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 1201994207,
size: 0.5,
source: 120199,
target: 4207 });
// adding node
var x_node = Math.cos(2 * 8 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 8 * Math.PI / N) * 10;
g.nodes.push({
id: 120203,
label: 'PROJECT: CryptoVIEW: Unraveling pathogenesis of Cryptococcosis using optical and multimodal visualizaion of enigmatic events and virulence aspects in vivo.',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2019/01/research_pasteur-in-vivo-imaging-of-cn-strain-differences-glissees-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/project/cryptoview-unraveling-pathogenesis-of-cryptococcosis-using-optical-and-multimodal-visualizaion-of-enigmatic-events-and-virulence-aspects-in-vivo/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 4207120203,
size: 0.5,
source: 4207,
target: 120203,
});
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: ,
label: 'Ajax Graph',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/ajax-graph/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 120203,
size: 0.5,
source: 120203,
target: });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4207) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 1202034207,
size: 0.5,
source: 120203,
target: 4207 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4109) {
n.size = n.size + 8;
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});
//link to content
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id: 1202034109,
size: 0.5,
source: 120203,
target: 4109 });
// adding node
var x_node = Math.cos(2 * 9 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 9 * Math.PI / N) * 10;
g.nodes.push({
id: 28610,
label: 'PROJECT: Deciphering dormancy in Cryptocococcus neoformans',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_cryptococcus-neoformans-stationary-phase-met-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/project/deciphering-dormancy-cryptocococcus-neoformans/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 420728610,
size: 0.5,
source: 4207,
target: 28610,
});
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 8554) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 286108554,
size: 0.5,
source: 28610,
target: 8554 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 8395,
label: 'Virginie Passet',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_passet-150x150.jpeg',
page_url: 'https://research.pasteur.fr/en/member/virginie-passet/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 286108395,
size: 0.5,
source: 28610,
target: 8395 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 906,
label: 'Marie-Agnès Dillies',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2018/09/research_pasteur-photomadillies2-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/marie-agnes-dillies/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 28610906,
size: 0.5,
source: 28610,
target: 906 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 840,
label: 'Jean-Yves Coppee',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/03/IMG_5253-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/jean-yves-coppee/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 28610840,
size: 0.5,
source: 28610,
target: 840 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 7837,
label: 'Milena Hasan',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_institutpasteur_43068-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/milena-hasan/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 286107837,
size: 0.5,
source: 28610,
target: 7837 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4207) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 286104207,
size: 0.5,
source: 28610,
target: 4207 });
// adding node
var x_node = Math.cos(2 * 10 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 10 * Math.PI / N) * 10;
g.nodes.push({
id: 22526,
label: 'TOOL: Databases on the epidemiology of invasive fungal infections in France',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2019/02/research_pasteur-champignons-copie-1-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/tool/databases-on-the-epidemiology-of-invasive-fungal-infections-in-france/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 420722526,
size: 0.5,
source: 4207,
target: 22526,
});
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4201,
label: 'Karine Boukris-Sitbon',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2018/07/research_pasteur-karine1-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/karine-boukris-sitbon/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 225264201,
size: 0.5,
source: 22526,
target: 4201 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4209) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 225264209,
size: 0.5,
source: 22526,
target: 4209 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4208) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 225264208,
size: 0.5,
source: 22526,
target: 4208 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4203) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 225264203,
size: 0.5,
source: 22526,
target: 4203 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4207) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 225264207,
size: 0.5,
source: 22526,
target: 4207 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 55986) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 2252655986,
size: 0.5,
source: 22526,
target: 55986 });
// adding node
var x_node = Math.cos(2 * 11 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 11 * Math.PI / N) * 10;
g.nodes.push({
id: 22089,
label: 'NRC: Invasive Mycoses and Antifungals',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_dromer1-150x150.jpeg',
page_url: 'https://research.pasteur.fr/en/nrc/national-reference-center-for-invasive-mycoses-antifungals/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 420722089,
size: 0.5,
source: 4207,
target: 22089,
});
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 197952,
label: 'Roxane Bayle',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/member/roxane-bayle/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 22089197952,
size: 0.5,
source: 22089,
target: 197952 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4201) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 220894201,
size: 0.5,
source: 22089,
target: 4201 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 181829,
label: 'Emilie Fruquière',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/member/emilie-fruquiere/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 22089181829,
size: 0.5,
source: 22089,
target: 181829 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 8392,
label: 'Sandrine Favre-Rochex',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_favre-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/sandrine-favre-rochex/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 220898392,
size: 0.5,
source: 22089,
target: 8392 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 8554) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 220898554,
size: 0.5,
source: 22089,
target: 8554 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 55986) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 2208955986,
size: 0.5,
source: 22089,
target: 55986 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4208) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 220894208,
size: 0.5,
source: 22089,
target: 4208 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4209) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 220894209,
size: 0.5,
source: 22089,
target: 4209 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4203) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 220894203,
size: 0.5,
source: 22089,
target: 4203 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4207) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 220894207,
size: 0.5,
source: 22089,
target: 4207 });
var s = new sigma({
//container: document.getElementById('graph-main'),
graph: g,
renderer: {
// IMPORTANT:
// This works only with the canvas renderer, so the
// renderer type set as "canvas" is necessary here.
container: document.getElementById('graph-main'),
type: 'canvas'
},
settings: {
minNodeSize: 6,
maxNodeSize: 35,
mouseWheelEnabled: false,
font: 'Montserrat',
labelThreshold:25,
borderSize:1,
defaultNodeBorderColor: '#999',
sideMargin:25,
}
});
// We first need to save the original colors of our
// nodes and edges, like this:
s.graph.nodes().forEach(function(n) {
n.originalColor = n.color;
});
s.graph.edges().forEach(function(e) {
e.originalColor = e.color;
});
// When a node is clicked, we check for each node
// if it is a neighbor of the clicked one. If not,
// we set its color as grey, and else, it takes its
// original color.
// We do the same for the edges, and we only keep
// edges that have both extremities colored.
s.bind('clickNode', function(e) {
var nodeId = e.data.node.id,
toKeep = s.graph.neighbors(nodeId);
toKeep[nodeId] = e.data.node;
s.graph.nodes().forEach(function(n) {
if (toKeep[n.id])
n.color = '#35a9f5';
else
n.color = '#dddddd';
});
s.graph.edges().forEach(function(e) {
if (toKeep[e.source] && toKeep[e.target])
e.color = '#35a9f5';
else
e.color = '#dddddd';
});
// Since the data has been modified, we need to
// call the refresh method to make the colors
// update effective.
s.refresh();
});
// When the stage is clicked, we just color each
// node and edge with its original color.
s.bind('clickStage', function(e) {
s.graph.nodes().forEach(function(n) {
n.color = n.originalColor;
});
s.graph.edges().forEach(function(e) {
e.color = e.originalColor;
});
// Same as in the previous event:
s.refresh();
});
s.bind("doubleClickNode", function (e) {
$("#canvas-wrap, .sigma-scene, .sigma-mouse").val();
ajax_load_page( e.data.node.page_url );
});
var c = s.camera;
s.bind("rightClickStage", function (e) {
sigma.misc.animation.camera(c, {
ratio: c.ratio * c.settings('zoomingRatio')
}, {
duration: 200
});
});
// Configure the noverlap layout:
var noverlapListener = s.configNoverlap({
nodeMargin: 10,
scaleNodes: 0.3,
gridSize: 1,
easing: 'quadraticInOut', // animation transition function
duration: 4000 // animation duration. Long here for the purposes of this example only
});
// Bind the events:
noverlapListener.bind('start stop interpolate', function(e) {
//console.log(e.type);
if(e.type === 'start') {
//console.time('noverlap');
}
if(e.type === 'interpolate') {
//console.timeEnd('noverlap');
}
});
// Start the layout:
s.startNoverlap();
//s.refresh();
// Initialize the dragNodes plugin:
var dragListener = sigma.plugins.dragNodes(s, s.renderers[0]);
dragListener.bind('startdrag', function(event) {
});
dragListener.bind('drag', function(event) {
});
dragListener.bind('drop', function(event) {
});
dragListener.bind('dragend', function(event) {
});