GUIDE
- Left-click and drag the background to move the graph
- Left-click and drag the nodes to reorganize
- Left-click a node to view first level connections
- Double left-click a node to navigate to its page
- Double left-click the background to zoom in
- Right-click the background to zoom out
sigma.utils.pkg('sigma.canvas.nodes');
sigma.canvas.nodes.image = (function() {
var _cache = {},
_loading = {},
_callbacks = {};
// Return the renderer itself:
var renderer = function(node, context, settings) {
var args = arguments,
prefix = settings('prefix') || '',
size = node[prefix + 'size'],
color = node.color || settings('defaultNodeColor'),
url = node.url;
if (_cache[url]) {
context.save();
// Draw the clipping disc:
context.beginPath();
context.arc(
node[prefix + 'x'],
node[prefix + 'y'],
node[prefix + 'size'],
0,
Math.PI * 2,
true
);
context.closePath();
context.clip();
// Draw the image
context.drawImage(
_cache[url],
node[prefix + 'x'] - size,
node[prefix + 'y'] - size,
2 * size,
2 * size
);
// Quit the "clipping mode":
context.restore();
// Draw the border:
context.beginPath();
context.arc(
node[prefix + 'x'],
node[prefix + 'y'],
node[prefix + 'size'],
0,
Math.PI * 2,
true
);
context.lineWidth = 1;
context.strokeStyle = node.color || settings('defaultNodeColor');
context.stroke();
} else {
sigma.canvas.nodes.image.cache(url);
sigma.canvas.nodes.def.apply(
sigma.canvas.nodes,
args
);
}
};
// Let's add a public method to cache images, to make it possible to
// preload images before the initial rendering:
renderer.cache = function(url, callback) {
if (callback)
_callbacks[url] = callback;
if (_loading[url])
return;
var img = new Image();
img.onload = function() {
_loading[url] = false;
_cache[url] = img;
if (_callbacks[url]) {
_callbacks[url].call(this, img);
delete _callbacks[url];
}
};
_loading[url] = true;
img.src = url;
};
return renderer;
})();
var i,
s,
o,
offset_left = 0.5,
N = 1,
E = 40,
C = 5,
d = 0.5,
cs = [],
g = {
nodes: [],
edges: []
};
if (!sigma.classes.graph.hasMethod('neighbors')){
sigma.classes.graph.addMethod('neighbors', function(nodeId) {
var k,
neighbors = {},
index = this.allNeighborsIndex[nodeId] || {};
for (k in index)
neighbors[k] = this.nodesIndex[k];
return neighbors;
});
}
//adding the central node
g.nodes.push({
id: 4172,
label: 'Laure Guenin-Mace',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2017/04/research.pasteur.fr_photo-laure-pasteur-1-150x150.jpg',
x: 0,
y: 0,
size: 30,
color: '#DDDDDD'
});
var biggest_node_size = 0;
N=6
// adding node
var x_node = Math.cos(2 * 0 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 0 * Math.PI / N) * 10;
g.nodes.push({
id: 238391,
label: 'TEAM: Meta-organism',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/team/meta-organism/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 4172238391,
size: 0.5,
source: 4172,
target: 238391,
});
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 237097,
label: 'Nicolas Bouladoux',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2025/01/research_pasteur-ennicolas-bouladouxfrnicolas-bouladoux-nicolas-bouladoux-1-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/nicolas-bouladoux__trashed/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 238391237097,
size: 0.5,
source: 238391,
target: 237097 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 230857,
label: 'Clarisse Ganier',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2024/09/research_pasteur-enclarisse-ganierfrclarisse-ganier-research-pasteur-enclarisse-ganierfrclarisse-ganier-clarisse-ganier-photo-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/clarisse-ganier/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 238391230857,
size: 0.5,
source: 238391,
target: 230857 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 8225,
label: 'Myriam Gominet',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2016/05/research.pasteur.fr_2016-05-24-09.24.54-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/myriam-gominet/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 2383918225,
size: 0.5,
source: 238391,
target: 8225 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4172) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 2383914172,
size: 0.5,
source: 238391,
target: 4172 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 8320,
label: 'Pascale Sitbon',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2019/02/research_pasteur-pascale3-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/pascale-sitbon/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 2383918320,
size: 0.5,
source: 238391,
target: 8320 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 230850,
label: 'Yasmine Belkaid',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2024/09/research_pasteur-enyasmine-belkaidfryasmine-belkaid-photo-yasmine-belkaid-carre-2-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/yasmine-belkaid/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 238391230850,
size: 0.5,
source: 238391,
target: 230850 });
// adding node
var x_node = Math.cos(2 * 1 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 1 * Math.PI / N) * 10;
g.nodes.push({
id: 226004,
label: 'PROJECT: Primary keratinocytes biobank to generate epidermal organoids EpiOrganoids',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/project/primary-keratinocytes-biobank-to-generate-epidermal-organoids-epiorganoids/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 4172226004,
size: 0.5,
source: 4172,
target: 226004,
});
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4172) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 2260044172,
size: 0.5,
source: 226004,
target: 4172 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4171,
label: 'Caroline Demangel',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/05/research_pasteur-caroline-demangel-id-caro2-2018-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/caroline-demangel/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 2260044171,
size: 0.5,
source: 226004,
target: 4171 });
// adding node
var x_node = Math.cos(2 * 2 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 2 * Math.PI / N) * 10;
g.nodes.push({
id: 151583,
label: 'PROJECT: Deci VERNEUIL – Etiology of Hidradenitis Suppurativa',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/08/research_pasteur-biomarkers-of-buruli-ulcer-disease-capture-decran-2020-12-17-a-16.20.50-150x150.png',
page_url: 'https://research.pasteur.fr/en/project/deciphering-the-causes-of-hidradenitis-suppurativa/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 4172151583,
size: 0.5,
source: 4172,
target: 151583,
});
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4180,
label: 'James Di Santo',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2016/05/research.pasteur.fr_photojd-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/james-di-santo/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 1515834180,
size: 0.5,
source: 151583,
target: 4180 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 80515,
label: 'Aude Nassif',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/member/aude-nassif/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 15158380515,
size: 0.5,
source: 151583,
target: 80515 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 80519,
label: 'Maia Delage Toriel',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2017/03/research.pasteur.fr_maia-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/maia-delage-toriel/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 15158380519,
size: 0.5,
source: 151583,
target: 80519 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4172) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 1515834172,
size: 0.5,
source: 151583,
target: 4172 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 7047,
label: 'Florence Bugault',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_florence-bugault-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/florence-bugault/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 1515837047,
size: 0.5,
source: 151583,
target: 7047 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4311,
label: 'Pedro Goncalves',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_ha18-150x150.jpeg',
page_url: 'https://research.pasteur.fr/en/member/pedro-goncalves/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 1515834311,
size: 0.5,
source: 151583,
target: 4311 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 169702,
label: 'Ayawavi Viviane Agbogan',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2021/10/research_pasteur-ayawavi-viviane-agbogan-viviane-agbogan-1-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/ayawavi-viviane-agbogan/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 151583169702,
size: 0.5,
source: 151583,
target: 169702 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4171) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 1515834171,
size: 0.5,
source: 151583,
target: 4171 });
// adding node
var x_node = Math.cos(2 * 3 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 3 * Math.PI / N) * 10;
g.nodes.push({
id: 145255,
label: 'NEWS: Gut microbiota plays a role in brain function and mood regulation',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/news/gut-microbiota-plays-a-role-in-brain-function-and-mood-regulation/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 4172145255,
size: 0.5,
source: 4172,
target: 145255,
});
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 3806,
label: 'Pierre-Marie Lledo',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/05/research_pasteur-pierre-marie-lledo-lledo-pierre-marie-6653-copie-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/pierre-marie-lledo/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 1452553806,
size: 0.5,
source: 145255,
target: 3806 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4172) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 1452554172,
size: 0.5,
source: 145255,
target: 4172 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 79465,
label: 'Maud Pascal',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2016/11/research.pasteur.fr_maud-12116-1-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/maud-pascal/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 14525579465,
size: 0.5,
source: 145255,
target: 79465 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 60900,
label: 'Thomas Laval',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/?post_type=member&p=60900',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 14525560900,
size: 0.5,
source: 145255,
target: 60900 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 81551,
label: 'Aline Rifflet',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/member/aline-rifflet/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 14525581551,
size: 0.5,
source: 145255,
target: 81551 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4355,
label: 'Ivo Gomperts Boneca',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/05/research_pasteur-ivo-gomperts-boneca-p9090188-copie-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/ivo-gomperts-boneca/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 1452554355,
size: 0.5,
source: 145255,
target: 4355 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4171) {
n.size = n.size + 8;
}
});
//link to content
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id: 1452554171,
size: 0.5,
source: 145255,
target: 4171 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4490,
label: 'Gabriel Lepousez',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/05/research.pasteur.fr_gabriel-lepousez1-150x150.jpeg',
page_url: 'https://research.pasteur.fr/en/member/gabriel-lepousez/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
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id: 1452554490,
size: 0.5,
source: 145255,
target: 4490 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
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x_site = x_node + ((Math.random() * 2)-1) + offset_left;
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y_site = y_node + ((Math.random() * 2)-1) - offset_left;
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y_site = y_node + ((Math.random() * 2)-1) + offset_left;
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// adding site
g.nodes.push({
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label: 'Gérard Eberl',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_eberl-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/gerard-eberl/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
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//link to content
g.edges.push({
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source: 145255,
target: 4225 });
// adding node
var x_node = Math.cos(2 * 4 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 4 * Math.PI / N) * 10;
g.nodes.push({
id: 32156,
label: 'PROJECT: BURULI Path: the subversive role of mycolactone',
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y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research_pasteur-mycobacterial-phenolic-glycolipids-and-innate-host-defenses-capture-decran-2020-12-18-a-14.41.20-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/project/mycolactone-of-m-ulcerans-and-immunodulation/',
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color: '#DDDDDD'
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target: 32156,
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//check if content already exist
// update node size depending on the amount of edges
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if (n.id == 4171) {
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//link to content
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size: 0.5,
source: 32156,
target: 4171 });
//check if content already exist
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x_site = x_node + ((Math.random() * 2)-1) - offset_left;
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x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
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y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 175222,
label: 'Daniela Ricci',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2022/01/research_pasteur-img-9269-1-150x150.jpeg',
page_url: 'https://research.pasteur.fr/en/member/daniela-ricci/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
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//link to content
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size: 0.5,
source: 32156,
target: 175222 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
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if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4457,
label: 'Gilles Dadaglio',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_ha5-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/gilles-dadaglio/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 321564457,
size: 0.5,
source: 32156,
target: 4457 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
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if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 198631,
label: 'Manon Capdeville',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2023/03/research_pasteur-research-pasteur-unknown-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/manon-capdeville/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
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id: 32156198631,
size: 0.5,
source: 32156,
target: 198631 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 197189,
label: 'Merlin Després',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2023/02/research_pasteur-despres-merlin-09-12-2019-2-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/merlin-despres/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
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id: 32156197189,
size: 0.5,
source: 32156,
target: 197189 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 8590,
label: 'Marine Oberkampf De Dabrun',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_ha10-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/marine-oberkampf-de-dabrun/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
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id: 321568590,
size: 0.5,
source: 32156,
target: 8590 });
//check if content already exist
// update node size depending on the amount of edges
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if (n.id == 4172) {
n.size = n.size + 8;
}
});
//link to content
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id: 321564172,
size: 0.5,
source: 32156,
target: 4172 });
// adding node
var x_node = Math.cos(2 * 5 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 5 * Math.PI / N) * 10;
g.nodes.push({
id: 6163,
label: 'TEAM: Integrated Mycobacterial Pathogenomics',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/06/research.pasteur.fr_tuberculosis2-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/integrated-mycobacterial-pathogenomics/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 41726163,
size: 0.5,
source: 4172,
target: 6163,
});
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
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x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 8308,
label: 'Laurence Langlais',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2016/06/research.pasteur.fr_laurencelanglais-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/laurence-langlais/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 61638308,
size: 0.5,
source: 6163,
target: 8308 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4351,
label: 'Ludovic Tailleux',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_ludovic-150x150.jpeg',
page_url: 'https://research.pasteur.fr/en/member/ludovic-tailleux/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
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id: 61634351,
size: 0.5,
source: 6163,
target: 4351 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
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x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 3995,
label: 'Roxane Simeone',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/11/research.pasteur.fr_20151029mip_7088-3-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/roxane-simeone/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 61633995,
size: 0.5,
source: 6163,
target: 3995 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 3994,
label: 'Fadel Sayes',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/10/research.pasteur.fr_20150928mip_6622--150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/fadel-sayes/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
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id: 61633994,
size: 0.5,
source: 6163,
target: 3994 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 3998,
label: 'Alexandre Pawlik',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/10/research.pasteur.fr_20150928mip_6643--150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/alexandre-pawlik/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 61633998,
size: 0.5,
source: 6163,
target: 3998 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 8470,
label: 'Wafa Zouaoui-Frigui',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/10/research.pasteur.fr_20150925mip_6609--150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/wafa-zouaoui-frigui/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 61638470,
size: 0.5,
source: 6163,
target: 8470 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 21957,
label: 'Mickael Orgeur',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/member/mickael-orgeur/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 616321957,
size: 0.5,
source: 6163,
target: 21957 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 173645,
label: 'Marc Settelen',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/member/marc-settelen/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 6163173645,
size: 0.5,
source: 6163,
target: 173645 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 194208,
label: 'Cecile Tillier',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2023/01/research_pasteur-cecile-tillier-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/cecile-tillier/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 6163194208,
size: 0.5,
source: 6163,
target: 194208 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 206436,
label: 'Blanca Bernabeu Vilaplana',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2023/08/research_pasteur-photo-villablanca-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/blanca-bernabeu-vilaplana/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 6163206436,
size: 0.5,
source: 6163,
target: 206436 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 8471,
label: 'Véronique Tatot',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/10/research.pasteur.fr_20151022mip_6793--150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/veronique-tatot/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 61638471,
size: 0.5,
source: 6163,
target: 8471 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 8473,
label: 'Françoise Guinandie',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/12/research.pasteur.fr_20151022mip_6802--150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/francoise-guinandie/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 61638473,
size: 0.5,
source: 6163,
target: 8473 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 221425,
label: 'Steven Barolin',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/member/steven-barolin/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 6163221425,
size: 0.5,
source: 6163,
target: 221425 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 3992,
label: 'Roland Brosch',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/12/research.pasteur.fr_roland1-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/roland-brosch/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 61633992,
size: 0.5,
source: 6163,
target: 3992 });
var s = new sigma({
//container: document.getElementById('graph-main'),
graph: g,
renderer: {
// IMPORTANT:
// This works only with the canvas renderer, so the
// renderer type set as "canvas" is necessary here.
container: document.getElementById('graph-main'),
type: 'canvas'
},
settings: {
minNodeSize: 6,
maxNodeSize: 35,
mouseWheelEnabled: false,
font: 'Montserrat',
labelThreshold:25,
borderSize:1,
defaultNodeBorderColor: '#999',
sideMargin:25,
}
});
// We first need to save the original colors of our
// nodes and edges, like this:
s.graph.nodes().forEach(function(n) {
n.originalColor = n.color;
});
s.graph.edges().forEach(function(e) {
e.originalColor = e.color;
});
// When a node is clicked, we check for each node
// if it is a neighbor of the clicked one. If not,
// we set its color as grey, and else, it takes its
// original color.
// We do the same for the edges, and we only keep
// edges that have both extremities colored.
s.bind('clickNode', function(e) {
var nodeId = e.data.node.id,
toKeep = s.graph.neighbors(nodeId);
toKeep[nodeId] = e.data.node;
s.graph.nodes().forEach(function(n) {
if (toKeep[n.id])
n.color = '#35a9f5';
else
n.color = '#dddddd';
});
s.graph.edges().forEach(function(e) {
if (toKeep[e.source] && toKeep[e.target])
e.color = '#35a9f5';
else
e.color = '#dddddd';
});
// Since the data has been modified, we need to
// call the refresh method to make the colors
// update effective.
s.refresh();
});
// When the stage is clicked, we just color each
// node and edge with its original color.
s.bind('clickStage', function(e) {
s.graph.nodes().forEach(function(n) {
n.color = n.originalColor;
});
s.graph.edges().forEach(function(e) {
e.color = e.originalColor;
});
// Same as in the previous event:
s.refresh();
});
s.bind("doubleClickNode", function (e) {
$("#canvas-wrap, .sigma-scene, .sigma-mouse").val();
ajax_load_page( e.data.node.page_url );
});
var c = s.camera;
s.bind("rightClickStage", function (e) {
sigma.misc.animation.camera(c, {
ratio: c.ratio * c.settings('zoomingRatio')
}, {
duration: 200
});
});
// Configure the noverlap layout:
var noverlapListener = s.configNoverlap({
nodeMargin: 10,
scaleNodes: 0.3,
gridSize: 1,
easing: 'quadraticInOut', // animation transition function
duration: 4000 // animation duration. Long here for the purposes of this example only
});
// Bind the events:
noverlapListener.bind('start stop interpolate', function(e) {
//console.log(e.type);
if(e.type === 'start') {
//console.time('noverlap');
}
if(e.type === 'interpolate') {
//console.timeEnd('noverlap');
}
});
// Start the layout:
s.startNoverlap();
//s.refresh();
// Initialize the dragNodes plugin:
var dragListener = sigma.plugins.dragNodes(s, s.renderers[0]);
dragListener.bind('startdrag', function(event) {
});
dragListener.bind('drag', function(event) {
});
dragListener.bind('drop', function(event) {
});
dragListener.bind('dragend', function(event) {
});