GUIDE
- Left-click and drag the background to move the graph
- Left-click and drag the nodes to reorganize
- Left-click a node to view first level connections
- Double left-click a node to navigate to its page
- Double left-click the background to zoom in
- Right-click the background to zoom out
sigma.utils.pkg('sigma.canvas.nodes');
sigma.canvas.nodes.image = (function() {
var _cache = {},
_loading = {},
_callbacks = {};
// Return the renderer itself:
var renderer = function(node, context, settings) {
var args = arguments,
prefix = settings('prefix') || '',
size = node[prefix + 'size'],
color = node.color || settings('defaultNodeColor'),
url = node.url;
if (_cache[url]) {
context.save();
// Draw the clipping disc:
context.beginPath();
context.arc(
node[prefix + 'x'],
node[prefix + 'y'],
node[prefix + 'size'],
0,
Math.PI * 2,
true
);
context.closePath();
context.clip();
// Draw the image
context.drawImage(
_cache[url],
node[prefix + 'x'] - size,
node[prefix + 'y'] - size,
2 * size,
2 * size
);
// Quit the "clipping mode":
context.restore();
// Draw the border:
context.beginPath();
context.arc(
node[prefix + 'x'],
node[prefix + 'y'],
node[prefix + 'size'],
0,
Math.PI * 2,
true
);
context.lineWidth = 1;
context.strokeStyle = node.color || settings('defaultNodeColor');
context.stroke();
} else {
sigma.canvas.nodes.image.cache(url);
sigma.canvas.nodes.def.apply(
sigma.canvas.nodes,
args
);
}
};
// Let's add a public method to cache images, to make it possible to
// preload images before the initial rendering:
renderer.cache = function(url, callback) {
if (callback)
_callbacks[url] = callback;
if (_loading[url])
return;
var img = new Image();
img.onload = function() {
_loading[url] = false;
_cache[url] = img;
if (_callbacks[url]) {
_callbacks[url].call(this, img);
delete _callbacks[url];
}
};
_loading[url] = true;
img.src = url;
};
return renderer;
})();
var i,
s,
o,
offset_left = 0.5,
N = 1,
E = 40,
C = 5,
d = 0.5,
cs = [],
g = {
nodes: [],
edges: []
};
if (!sigma.classes.graph.hasMethod('neighbors')){
sigma.classes.graph.addMethod('neighbors', function(nodeId) {
var k,
neighbors = {},
index = this.allNeighborsIndex[nodeId] || {};
for (k in index)
neighbors[k] = this.nodesIndex[k];
return neighbors;
});
}
//adding the central node
g.nodes.push({
id: 3793,
label: 'Pierre-Jean Corringer',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2018/02/research_pasteur-photo_corringer-150x150.jpg',
x: 0,
y: 0,
size: 30,
color: '#DDDDDD'
});
var biggest_node_size = 0;
N=14
// adding node
var x_node = Math.cos(2 * 0 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 0 * Math.PI / N) * 10;
g.nodes.push({
id: 230067,
label: 'NEWS: New publication – The Nicotinic Acetylcholine Receptor and its Pentameric Homologs: Toward an Allosteric Mechanism of Signal Transduction at the Atomic Level',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/news/new-publication-the-nicotinic-acetylcholine-receptor-and-its-pentameric-homologs-toward-an-allosteric-mechanism-of-signal-transduction-at-the-atomic-level/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 3793230067,
size: 0.5,
source: 3793,
target: 230067,
});
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 3793) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 2300673793,
size: 0.5,
source: 230067,
target: 3793 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 74512,
label: 'Jean-Pierre Changeux',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2016/07/research.pasteur.fr_jpchangeux-small-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/jean-pierre-changeux/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 23006774512,
size: 0.5,
source: 230067,
target: 74512 });
// adding node
var x_node = Math.cos(2 * 1 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 1 * Math.PI / N) * 10;
g.nodes.push({
id: 219919,
label: 'EVENT: Neuroscience Departmental Seminar: “Slow AMPA receptors.”',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/event/neuroscience-departmental-seminar-slow-ampa-receptors/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 3793219919,
size: 0.5,
source: 3793,
target: 219919,
});
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 3793) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 2199193793,
size: 0.5,
source: 219919,
target: 3793 });
// adding node
var x_node = Math.cos(2 * 2 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 2 * Math.PI / N) * 10;
g.nodes.push({
id: 195608,
label: 'EVENT: Department of Neuroscience seminar Vladan Lučić (Max Planck Institute of Biochemistry, Germany) – Architecture of synaptic protein assemblies by cryo-electron tomography',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/event/department-of-neuroscience-seminar-vladan-lucic-max-planck-institute-of-biochemistry-germany-architecture-of-synaptic-protein-assemblies-by-cryo-electron-tomography/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 3793195608,
size: 0.5,
source: 3793,
target: 195608,
});
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 3793) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 1956083793,
size: 0.5,
source: 195608,
target: 3793 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 102089,
label: 'Marie Prevost',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2023/02/research_pasteur-profilepic-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/marie-prevost/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 195608102089,
size: 0.5,
source: 195608,
target: 102089 });
// adding node
var x_node = Math.cos(2 * 3 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 3 * Math.PI / N) * 10;
g.nodes.push({
id: 135102,
label: 'EVENT: DPT NEUROSCIENCE – Thesis defence : Mariano GENERA – Structural and functional study of the human phosphatase PTPN3 and its interaction with oncogenic viruses.',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/event/dpt-neuroscience-thesis-defence-mariano-genera/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 3793135102,
size: 0.5,
source: 3793,
target: 135102,
});
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4156,
label: 'Nicolas Wolff',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/09/research.pasteur.fr_photo-du-30-09-2015-a-09.47-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/nicolas-wolff/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 1351024156,
size: 0.5,
source: 135102,
target: 4156 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 3793) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 1351023793,
size: 0.5,
source: 135102,
target: 3793 });
// adding node
var x_node = Math.cos(2 * 4 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 4 * Math.PI / N) * 10;
g.nodes.push({
id: 133343,
label: 'PROJECT: HBP-CDP6: Modelling for Drug Discovery',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/project/hbp-cdp6-modelling-for-drug-discovery/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 3793133343,
size: 0.5,
source: 3793,
target: 133343,
});
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 3793) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 1333433793,
size: 0.5,
source: 133343,
target: 3793 });
// adding node
var x_node = Math.cos(2 * 5 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 5 * Math.PI / N) * 10;
g.nodes.push({
id: 133335,
label: 'PROJECT: ANR-Pentacontrol',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/project/anr-pentacontrol/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 3793133335,
size: 0.5,
source: 3793,
target: 133335,
});
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 3793) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 1333353793,
size: 0.5,
source: 133335,
target: 3793 });
// adding node
var x_node = Math.cos(2 * 6 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 6 * Math.PI / N) * 10;
g.nodes.push({
id: 133326,
label: 'PROJECT: ERC advanced DYNACOTINE',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/project/erc-advanced-dynacotine/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 3793133326,
size: 0.5,
source: 3793,
target: 133326,
});
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 3793) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 1333263793,
size: 0.5,
source: 133326,
target: 3793 });
// adding node
var x_node = Math.cos(2 * 7 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 7 * Math.PI / N) * 10;
g.nodes.push({
id: 131128,
label: 'EVENT: PhD defense – Solène Lefebvre – “Applications de la fluorescence pour la caractérisation structurale et dynamique d’intermédiaires conformationnels des récepteurs-canaux pentamériques” – Department of Neuroscience',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/event/phd-defense-solene-lefebvre-applications-de-la-fluorescence-pour-la-caracterisation-structurale-et-dynamique-dintermediaires-conformationnels-des-recepteurs-canaux-pentameriques-dep/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 3793131128,
size: 0.5,
source: 3793,
target: 131128,
});
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 8705,
label: '',
type: 'image',
url: '',
page_url: '',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 1311288705,
size: 0.5,
source: 131128,
target: 8705 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 3793) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 1311283793,
size: 0.5,
source: 131128,
target: 3793 });
// adding node
var x_node = Math.cos(2 * 8 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 8 * Math.PI / N) * 10;
g.nodes.push({
id: 120388,
label: 'EVENT: Neuroscience Seminar Series : Structure-guided design of synthetic connectors for synaptic repair.',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/event/neuroscience-seminar-series-structure-guided-design-of-synthetic-connectors-for-synaptic-repair/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 3793120388,
size: 0.5,
source: 3793,
target: 120388,
});
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 3793) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 1203883793,
size: 0.5,
source: 120388,
target: 3793 });
// adding node
var x_node = Math.cos(2 * 9 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 9 * Math.PI / N) * 10;
g.nodes.push({
id: 104131,
label: 'PROJECT: Toxins and VHHs as subtype-specific ligands and allosteric modulators of nicotinic acetylcholine receptors (PTR Nicobinder)',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/project/toxins-nanobodies-subtype-specific-ligands-allosteric-modulators-nicotinic-acetylcholine-receptors-ptr-nicobinder/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 3793104131,
size: 0.5,
source: 3793,
target: 104131,
});
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 3801,
label: 'Uwe Maskos',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/12/research.pasteur.fr_um_1-3-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/uwe-maskos/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 1041313801,
size: 0.5,
source: 104131,
target: 3801 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 749,
label: 'Pierre Lafaye',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/01/Lafaye-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/pierre-lafaye/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 104131749,
size: 0.5,
source: 104131,
target: 749 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 99324,
label: 'Gabriel Aymé',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2018/03/research_pasteur-iphone-006-1-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/gabriel-ayme/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 10413199324,
size: 0.5,
source: 104131,
target: 99324 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 3793) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 1041313793,
size: 0.5,
source: 104131,
target: 3793 });
// adding node
var x_node = Math.cos(2 * 10 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 10 * Math.PI / N) * 10;
g.nodes.push({
id: 104129,
label: 'PROJECT: Discovery of allosteric modulators specifically targeting α5-containing nAChRs. (ANR-Nicofive)',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/project/discovery-allosteric-modulators-specifically-targeting-%ce%b15-containing-nachrs-anr-nicofive/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 3793104129,
size: 0.5,
source: 3793,
target: 104129,
});
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4615,
label: 'Arnaud Blondel',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2018/01/research_pasteur-id-a_blondel-c-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/arnaud-blondel/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 1041294615,
size: 0.5,
source: 104129,
target: 4615 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 3793) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 1041293793,
size: 0.5,
source: 104129,
target: 3793 });
// adding node
var x_node = Math.cos(2 * 11 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 11 * Math.PI / N) * 10;
g.nodes.push({
id: 102118,
label: 'PROJECT: MECANICOC',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/project/mecanicoc/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 3793102118,
size: 0.5,
source: 3793,
target: 102118,
});
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 906,
label: 'Marie-Agnès Dillies',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2018/09/research_pasteur-photomadillies2-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/marie-agnes-dillies/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 102118906,
size: 0.5,
source: 102118,
target: 906 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 63328,
label: 'Anne Biton',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2018/09/research_pasteur-img_e2453-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/anne-biton/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
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target: 63328 });
//check if content already exist
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y_site = y_node + ((Math.random() * 2)-1) - offset_left;
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y_site = y_node + ((Math.random() * 2)-1) + offset_left;
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// adding site
g.nodes.push({
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label: 'Morgane Besson',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2017/07/research_pasteur-capture-decran-2017-07-22-a-17.21.36-150x150.png',
page_url: 'https://research.pasteur.fr/en/member/morgane-besson/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
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target: 4523 });
//check if content already exist
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//link to content
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//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
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y_site = y_node + ((Math.random() * 2)-1) - offset_left;
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y_site = y_node + ((Math.random() * 2)-1) + offset_left;
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// adding site
g.nodes.push({
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label: '',
type: 'image',
url: '',
page_url: '',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
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//check if content already exist
// update node size depending on the amount of edges
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//link to content
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// adding node
var x_node = Math.cos(2 * 12 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 12 * Math.PI / N) * 10;
g.nodes.push({
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label: 'EVENT: Neuroscience – unité Récepteurs-Canaux Lab Seminar',
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y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/event/neuroscience-unite-recepteurs-canaux-lab-seminar/',
size: 35,
color: '#DDDDDD'
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y_site = y_node + ((Math.random() * 2)-1) - offset_left;
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y_site = y_node + ((Math.random() * 2)-1) + offset_left;
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// adding site
g.nodes.push({
id: 4076,
label: 'Grazyna Faure-Kuzminska',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2016/06/research.pasteur.fr_gf-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/grazyna-faure-kuzminska/',
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target: 4076 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
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//link to content
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// adding node
var x_node = Math.cos(2 * 13 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 13 * Math.PI / N) * 10;
g.nodes.push({
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label: 'TEAM: Signaling and receptors dynamics',
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y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2014/09/research_pasteur-channel-receptors-bandeau-unite-pj-corringer-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/signaling-and-receptors-dynamics/',
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target: 86,
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//check if content already exist
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//link to content
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target: 4156 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
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//link to content
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//check if content already exist
if (x_node<0){
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y_site = y_node + ((Math.random() * 2)-1) - offset_left;
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y_site = y_node + ((Math.random() * 2)-1) + offset_left;
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// adding site
g.nodes.push({
id: 4196,
label: 'Gaël Moneron',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/05/research.pasteur.fr_gael-moneron2-e1442504490400-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/gael-moneron/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
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size: 0.5,
source: 86,
target: 4196 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
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x_site = x_node + ((Math.random() * 2)-1) + offset_left;
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y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 204741,
label: 'Catherine Venien-Bryan',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/member/catherine-venien-bryan/',
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y: y_site,
size: 10,
color: '#dddddd'
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source: 86,
target: 204741 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
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x_site = x_node + ((Math.random() * 2)-1) + offset_left;
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if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
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y_site = y_node + ((Math.random() * 2)-1) + offset_left;
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// adding site
g.nodes.push({
id: 8432,
label: 'Nathalie Barilone',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/member/nathalie-barilone/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
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//link to content
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target: 8432 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
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x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 8708,
label: 'Karima Medjebeur',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/member/karima-medjebeur/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 868708,
size: 0.5,
source: 86,
target: 8708 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
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x_site = x_node + ((Math.random() * 2)-1) + offset_left;
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y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 192100,
label: 'Orso Subrini',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/member/orso-subrini/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
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id: 86192100,
size: 0.5,
source: 86,
target: 192100 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 221612,
label: 'Zahra Marouf',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/member/zahra-marouf/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 86221612,
size: 0.5,
source: 86,
target: 221612 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
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x_site = x_node + ((Math.random() * 2)-1) + offset_left;
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y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 161527,
label: 'Nour Awad',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/member/nour-awad/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 86161527,
size: 0.5,
source: 86,
target: 161527 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 154176,
label: 'Flavio Alvarez',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/member/flavio-alvarez/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 86154176,
size: 0.5,
source: 86,
target: 154176 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
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x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 168405,
label: 'Yasmine Achat',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/member/yasmine-achat/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 86168405,
size: 0.5,
source: 86,
target: 168405 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
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y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 175836,
label: 'Andreas Zoumpoulakis',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/member/andreas-zoumpoulakis/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 86175836,
size: 0.5,
source: 86,
target: 175836 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 175838,
label: 'Maria Vangelatou',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2022/02/research_pasteur-maria-vangelatou-92350283-885252988568502-1704564789117714432-n-1-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/maria-vangelatou/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 86175838,
size: 0.5,
source: 86,
target: 175838 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 180527,
label: 'Korantin Le Mouël',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/member/korantin-le-mouel/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 86180527,
size: 0.5,
source: 86,
target: 180527 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 193301,
label: 'Matthieu Sèze',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/member/matthieu-seze/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 86193301,
size: 0.5,
source: 86,
target: 193301 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 219567,
label: 'Laura Cardon',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/member/laura-cardon/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 86219567,
size: 0.5,
source: 86,
target: 219567 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 220748,
label: 'Clarice Marty',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/member/clarice-marty/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 86220748,
size: 0.5,
source: 86,
target: 220748 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 233147,
label: 'Antonio EL HELOU',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2024/10/research_pasteur-enantonio-el-heloufrantonio-el-helou-photo-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/antonio-el-helou/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 86233147,
size: 0.5,
source: 86,
target: 233147 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 217471,
label: 'Eric Figueroa Acosta',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2024/01/research_pasteur-eneric-figueroa-acostafreric-figueroa-acosta-research-pasteur-eneric-figueroa-acostafreric-figueroa-acosta-photo-ig-portrait-email-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/eric-figueroa-acosta/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 86217471,
size: 0.5,
source: 86,
target: 217471 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 235155,
label: 'Chloé ANGOLE',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/member/chloe-angole/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 86235155,
size: 0.5,
source: 86,
target: 235155 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 3793) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 863793,
size: 0.5,
source: 86,
target: 3793 });
var s = new sigma({
//container: document.getElementById('graph-main'),
graph: g,
renderer: {
// IMPORTANT:
// This works only with the canvas renderer, so the
// renderer type set as "canvas" is necessary here.
container: document.getElementById('graph-main'),
type: 'canvas'
},
settings: {
minNodeSize: 6,
maxNodeSize: 35,
mouseWheelEnabled: false,
font: 'Montserrat',
labelThreshold:25,
borderSize:1,
defaultNodeBorderColor: '#999',
sideMargin:25,
}
});
// We first need to save the original colors of our
// nodes and edges, like this:
s.graph.nodes().forEach(function(n) {
n.originalColor = n.color;
});
s.graph.edges().forEach(function(e) {
e.originalColor = e.color;
});
// When a node is clicked, we check for each node
// if it is a neighbor of the clicked one. If not,
// we set its color as grey, and else, it takes its
// original color.
// We do the same for the edges, and we only keep
// edges that have both extremities colored.
s.bind('clickNode', function(e) {
var nodeId = e.data.node.id,
toKeep = s.graph.neighbors(nodeId);
toKeep[nodeId] = e.data.node;
s.graph.nodes().forEach(function(n) {
if (toKeep[n.id])
n.color = '#35a9f5';
else
n.color = '#dddddd';
});
s.graph.edges().forEach(function(e) {
if (toKeep[e.source] && toKeep[e.target])
e.color = '#35a9f5';
else
e.color = '#dddddd';
});
// Since the data has been modified, we need to
// call the refresh method to make the colors
// update effective.
s.refresh();
});
// When the stage is clicked, we just color each
// node and edge with its original color.
s.bind('clickStage', function(e) {
s.graph.nodes().forEach(function(n) {
n.color = n.originalColor;
});
s.graph.edges().forEach(function(e) {
e.color = e.originalColor;
});
// Same as in the previous event:
s.refresh();
});
s.bind("doubleClickNode", function (e) {
$("#canvas-wrap, .sigma-scene, .sigma-mouse").val();
ajax_load_page( e.data.node.page_url );
});
var c = s.camera;
s.bind("rightClickStage", function (e) {
sigma.misc.animation.camera(c, {
ratio: c.ratio * c.settings('zoomingRatio')
}, {
duration: 200
});
});
// Configure the noverlap layout:
var noverlapListener = s.configNoverlap({
nodeMargin: 10,
scaleNodes: 0.3,
gridSize: 1,
easing: 'quadraticInOut', // animation transition function
duration: 4000 // animation duration. Long here for the purposes of this example only
});
// Bind the events:
noverlapListener.bind('start stop interpolate', function(e) {
//console.log(e.type);
if(e.type === 'start') {
//console.time('noverlap');
}
if(e.type === 'interpolate') {
//console.timeEnd('noverlap');
}
});
// Start the layout:
s.startNoverlap();
//s.refresh();
// Initialize the dragNodes plugin:
var dragListener = sigma.plugins.dragNodes(s, s.renderers[0]);
dragListener.bind('startdrag', function(event) {
});
dragListener.bind('drag', function(event) {
});
dragListener.bind('drop', function(event) {
});
dragListener.bind('dragend', function(event) {
});