GUIDE
- Left-click and drag the background to move the graph
- Left-click and drag the nodes to reorganize
- Left-click a node to view first level connections
- Double left-click a node to navigate to its page
- Double left-click the background to zoom in
- Right-click the background to zoom out
sigma.utils.pkg('sigma.canvas.nodes');
sigma.canvas.nodes.image = (function() {
var _cache = {},
_loading = {},
_callbacks = {};
// Return the renderer itself:
var renderer = function(node, context, settings) {
var args = arguments,
prefix = settings('prefix') || '',
size = node[prefix + 'size'],
color = node.color || settings('defaultNodeColor'),
url = node.url;
if (_cache[url]) {
context.save();
// Draw the clipping disc:
context.beginPath();
context.arc(
node[prefix + 'x'],
node[prefix + 'y'],
node[prefix + 'size'],
0,
Math.PI * 2,
true
);
context.closePath();
context.clip();
// Draw the image
context.drawImage(
_cache[url],
node[prefix + 'x'] - size,
node[prefix + 'y'] - size,
2 * size,
2 * size
);
// Quit the "clipping mode":
context.restore();
// Draw the border:
context.beginPath();
context.arc(
node[prefix + 'x'],
node[prefix + 'y'],
node[prefix + 'size'],
0,
Math.PI * 2,
true
);
context.lineWidth = 1;
context.strokeStyle = node.color || settings('defaultNodeColor');
context.stroke();
} else {
sigma.canvas.nodes.image.cache(url);
sigma.canvas.nodes.def.apply(
sigma.canvas.nodes,
args
);
}
};
// Let's add a public method to cache images, to make it possible to
// preload images before the initial rendering:
renderer.cache = function(url, callback) {
if (callback)
_callbacks[url] = callback;
if (_loading[url])
return;
var img = new Image();
img.onload = function() {
_loading[url] = false;
_cache[url] = img;
if (_callbacks[url]) {
_callbacks[url].call(this, img);
delete _callbacks[url];
}
};
_loading[url] = true;
img.src = url;
};
return renderer;
})();
var i,
s,
o,
offset_left = 0.5,
N = 1,
E = 40,
C = 5,
d = 0.5,
cs = [],
g = {
nodes: [],
edges: []
};
if (!sigma.classes.graph.hasMethod('neighbors')){
sigma.classes.graph.addMethod('neighbors', function(nodeId) {
var k,
neighbors = {},
index = this.allNeighborsIndex[nodeId] || {};
for (k in index)
neighbors[k] = this.nodesIndex[k];
return neighbors;
});
}
//adding the central node
g.nodes.push({
id: 36,
label: 'Human Genetics and Cognitive Functions',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_institutpasteur_32050-150x150.jpg',
x: 0,
y: 0,
size: 30,
color: '#DDDDDD'
});
N=22
var x_node = Math.cos(2 * 0 * Math.PI / N) * 2;
var y_node = Math.sin(2 * 0 * Math.PI / N) * 2;
var biggest_node_size = 0;
//check if content already exist
x_site = Math.cos(2 * 0 * Math.PI / N) * 2;
y_site = Math.sin(2 * 0 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 178933,
label: 'Anaël Ayrolles',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/member/anael-ayrolles/',
x: x_site,
y: y_site,
size: 16,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 36178933,
size: 0.5,
source: 36,
target: 178933 });
//check if content already exist
x_site = Math.cos(2 * 1 * Math.PI / N) * 2;
y_site = Math.sin(2 * 1 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 119259,
label: 'Florence Campana',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/member/fr-florence-campana/',
x: x_site,
y: y_site,
size: 16,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 36119259,
size: 0.5,
source: 36,
target: 119259 });
//check if content already exist
x_site = Math.cos(2 * 2 * Math.PI / N) * 2;
y_site = Math.sin(2 * 2 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 24536,
label: 'Freddy Cliquet',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2018/02/research_pasteur-17637047_1396080250451325_800557458960161845_o-2-e1519724213254-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/freddy-cliquet/',
x: x_site,
y: y_site,
size: 16,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 3624536,
size: 0.5,
source: 36,
target: 24536 });
//check if content already exist
x_site = Math.cos(2 * 3 * Math.PI / N) * 2;
y_site = Math.sin(2 * 3 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 8350,
label: 'Sabrina Coqueran',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_coqueran-150x150.jpeg',
page_url: 'https://research.pasteur.fr/en/member/sabrina-coqueran/',
x: x_site,
y: y_site,
size: 16,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 368350,
size: 0.5,
source: 36,
target: 8350 });
//check if content already exist
x_site = Math.cos(2 * 4 * Math.PI / N) * 2;
y_site = Math.sin(2 * 4 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 3768,
label: 'Fabrice de Chaumont',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/06/research.pasteur.fr_fabrice-de-chaumont-150x150.png',
page_url: 'https://research.pasteur.fr/en/member/fabrice-de-chaumont/',
x: x_site,
y: y_site,
size: 16,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 363768,
size: 0.5,
source: 36,
target: 3768 });
//check if content already exist
x_site = Math.cos(2 * 5 * Math.PI / N) * 2;
y_site = Math.sin(2 * 5 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 8360,
label: 'Richard Delorme',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/08/research.pasteur.fr_delorme-150x150.png',
page_url: 'https://research.pasteur.fr/en/member/richard-delorme/',
x: x_site,
y: y_site,
size: 16,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 368360,
size: 0.5,
source: 36,
target: 8360 });
//check if content already exist
x_site = Math.cos(2 * 6 * Math.PI / N) * 2;
y_site = Math.sin(2 * 6 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 119254,
label: 'Benjamin Devauchelle',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2019/03/research_pasteur-capture-decran-2019-03-01-a-14.34.49-150x150.png',
page_url: 'https://research.pasteur.fr/en/member/fr-benjamin-devauchelle/',
x: x_site,
y: y_site,
size: 16,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 36119254,
size: 0.5,
source: 36,
target: 119254 });
//check if content already exist
x_site = Math.cos(2 * 7 * Math.PI / N) * 2;
y_site = Math.sin(2 * 7 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 4525,
label: 'Benoît Forget',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/09/research.pasteur.fr_picturebencv-150x150.png',
page_url: 'https://research.pasteur.fr/en/member/benoit-forget/',
x: x_site,
y: y_site,
size: 16,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 364525,
size: 0.5,
source: 36,
target: 4525 });
//check if content already exist
x_site = Math.cos(2 * 8 * Math.PI / N) * 2;
y_site = Math.sin(2 * 8 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 101504,
label: 'Claire Leblond',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2018/02/research_pasteur-2015_claire_portrait-1-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/claire-leblond/',
x: x_site,
y: y_site,
size: 16,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 36101504,
size: 0.5,
source: 36,
target: 101504 });
//check if content already exist
x_site = Math.cos(2 * 9 * Math.PI / N) * 2;
y_site = Math.sin(2 * 9 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 115680,
label: 'Aline Lefebvre',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2020/03/research_pasteur-alinelefebvre-150x150.jpeg',
page_url: 'https://research.pasteur.fr/en/member/fr-aline-lefebvre/',
x: x_site,
y: y_site,
size: 16,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 36115680,
size: 0.5,
source: 36,
target: 115680 });
//check if content already exist
x_site = Math.cos(2 * 10 * Math.PI / N) * 2;
y_site = Math.sin(2 * 10 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 156728,
label: 'Chloé Lehoucq',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2021/04/research_pasteur-chloe-lehoucq-photo-cl-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/chloe-lehoucq/',
x: x_site,
y: y_site,
size: 16,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 36156728,
size: 0.5,
source: 36,
target: 156728 });
//check if content already exist
x_site = Math.cos(2 * 11 * Math.PI / N) * 2;
y_site = Math.sin(2 * 11 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 8362,
label: 'Nathalie Lemiere',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/08/research.pasteur.fr_lemiere-150x150.png',
page_url: 'https://research.pasteur.fr/en/member/nathalie-lemiere/',
x: x_site,
y: y_site,
size: 16,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 368362,
size: 0.5,
source: 36,
target: 8362 });
//check if content already exist
x_site = Math.cos(2 * 12 * Math.PI / N) * 2;
y_site = Math.sin(2 * 12 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 4405,
label: 'Simon Malesys',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2018/02/research_pasteur-pasteur-profile-1-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/simon-malesys/',
x: x_site,
y: y_site,
size: 16,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 364405,
size: 0.5,
source: 36,
target: 4405 });
//check if content already exist
x_site = Math.cos(2 * 13 * Math.PI / N) * 2;
y_site = Math.sin(2 * 13 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 156840,
label: 'Anna Maruani',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/member/anna-maruani/',
x: x_site,
y: y_site,
size: 16,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 36156840,
size: 0.5,
source: 36,
target: 156840 });
//check if content already exist
x_site = Math.cos(2 * 14 * Math.PI / N) * 2;
y_site = Math.sin(2 * 14 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 3960,
label: 'Alexandre Mathieu',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/08/research.pasteur.fr_mathieua-150x150.png',
page_url: 'https://research.pasteur.fr/en/member/alexandre-mathieu/',
x: x_site,
y: y_site,
size: 16,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 363960,
size: 0.5,
source: 36,
target: 3960 });
//check if content already exist
x_site = Math.cos(2 * 15 * Math.PI / N) * 2;
y_site = Math.sin(2 * 15 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 152224,
label: 'Clara Moreau',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2021/01/research_pasteur-enclara-moreaufrclara-a-moreau-camoreau3-e1619428251254-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/clara-moreau/',
x: x_site,
y: y_site,
size: 16,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 36152224,
size: 0.5,
source: 36,
target: 152224 });
//check if content already exist
x_site = Math.cos(2 * 16 * Math.PI / N) * 2;
y_site = Math.sin(2 * 16 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 156871,
label: 'Myriam Rachid',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/member/myriam-rachid/',
x: x_site,
y: y_site,
size: 16,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 36156871,
size: 0.5,
source: 36,
target: 156871 });
//check if content already exist
x_site = Math.cos(2 * 17 * Math.PI / N) * 2;
y_site = Math.sin(2 * 17 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 3967,
label: 'Thomas Rolland',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2018/02/research_pasteur-photo_tr_small2-2-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/thomas-rolland/',
x: x_site,
y: y_site,
size: 16,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 363967,
size: 0.5,
source: 36,
target: 3967 });
//check if content already exist
x_site = Math.cos(2 * 18 * Math.PI / N) * 2;
y_site = Math.sin(2 * 18 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 8358,
label: 'Anne Claude Tabet',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/08/research.pasteur.fr_tabetac-150x150.png',
page_url: 'https://research.pasteur.fr/en/member/anne-claude-tabet/',
x: x_site,
y: y_site,
size: 16,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 368358,
size: 0.5,
source: 36,
target: 8358 });
//check if content already exist
x_site = Math.cos(2 * 19 * Math.PI / N) * 2;
y_site = Math.sin(2 * 19 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 4668,
label: 'Elisabeth Verpy',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/member/elisabeth-verpy/',
x: x_site,
y: y_site,
size: 16,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 364668,
size: 0.5,
source: 36,
target: 4668 });
//check if content already exist
x_site = Math.cos(2 * 20 * Math.PI / N) * 2;
y_site = Math.sin(2 * 20 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 56155,
label: 'Aline Vitrac',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2018/03/research_pasteur-capture-decran-2018-03-01-a-18.07.53-150x150.png',
page_url: 'https://research.pasteur.fr/en/member/aline-vitrac/',
x: x_site,
y: y_site,
size: 16,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 3656155,
size: 0.5,
source: 36,
target: 56155 });
//check if content already exist
x_site = Math.cos(2 * 21 * Math.PI / N) * 2;
y_site = Math.sin(2 * 21 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 3770,
label: 'Thomas Bourgeron',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/05/research.pasteur.fr_thomas-bourgeron-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/thomas-bourgeron/',
x: x_site,
y: y_site,
size: 16,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 363770,
size: 0.5,
source: 36,
target: 3770 });
// update positions
x_node = Math.cos(2 * 0 * Math.PI / N) * 10;
y_node = Math.sin(2 * 0 * Math.PI / N) * 10;
N=32
// adding node
var x_node = Math.cos(2 * 0 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 0 * Math.PI / N) * 10;
g.nodes.push({
id: 182036,
label: 'PROJECT: (FR) Étude des facteurs génétiques impliqués dans l’autisme et les troubles apparentés (projet “C16”)',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/project/fr-genes-et-autisme/',
size: 24,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 36182036,
size: 0.5,
source: 36,
target: 182036 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 3770) {
n.size = n.size + 10;
if ( n.size > biggest_node_size ){
biggest_node_size = n.size;
}
}
});
g.nodes.forEach(function(n) {
if (n.id == 36) {
if ( n.size < biggest_node_size ){
n.size = biggest_node_size;
}
}
});
//link to content
g.edges.push({
id: 1820363770,
size: 0.5,
source: 182036,
target: 3770 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 156840) {
n.size = n.size + 10;
if ( n.size > biggest_node_size ){
biggest_node_size = n.size;
}
}
});
g.nodes.forEach(function(n) {
if (n.id == 36) {
if ( n.size < biggest_node_size ){
n.size = biggest_node_size;
}
}
});
//link to content
g.edges.push({
id: 182036156840,
size: 0.5,
source: 182036,
target: 156840 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 115680) {
n.size = n.size + 10;
if ( n.size > biggest_node_size ){
biggest_node_size = n.size;
}
}
});
g.nodes.forEach(function(n) {
if (n.id == 36) {
if ( n.size < biggest_node_size ){
n.size = biggest_node_size;
}
}
});
//link to content
g.edges.push({
id: 182036115680,
size: 0.5,
source: 182036,
target: 115680 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 8360) {
n.size = n.size + 10;
if ( n.size > biggest_node_size ){
biggest_node_size = n.size;
}
}
});
g.nodes.forEach(function(n) {
if (n.id == 36) {
if ( n.size < biggest_node_size ){
n.size = biggest_node_size;
}
}
});
//link to content
g.edges.push({
id: 1820368360,
size: 0.5,
source: 182036,
target: 8360 });
// adding node
var x_node = Math.cos(2 * 1 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 1 * Math.PI / N) * 10;
g.nodes.push({
id: 178578,
label: 'TOOL: GeneTrek',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/tool/genetrek/',
size: 24,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 36178578,
size: 0.5,
source: 36,
target: 178578 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4405) {
n.size = n.size + 10;
if ( n.size > biggest_node_size ){
biggest_node_size = n.size;
}
}
});
g.nodes.forEach(function(n) {
if (n.id == 36) {
if ( n.size < biggest_node_size ){
n.size = biggest_node_size;
}
}
});
//link to content
g.edges.push({
id: 1785784405,
size: 0.5,
source: 178578,
target: 4405 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 101504) {
n.size = n.size + 10;
if ( n.size > biggest_node_size ){
biggest_node_size = n.size;
}
}
});
g.nodes.forEach(function(n) {
if (n.id == 36) {
if ( n.size < biggest_node_size ){
n.size = biggest_node_size;
}
}
});
//link to content
g.edges.push({
id: 178578101504,
size: 0.5,
source: 178578,
target: 101504 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 3967) {
n.size = n.size + 10;
if ( n.size > biggest_node_size ){
biggest_node_size = n.size;
}
}
});
g.nodes.forEach(function(n) {
if (n.id == 36) {
if ( n.size < biggest_node_size ){
n.size = biggest_node_size;
}
}
});
//link to content
g.edges.push({
id: 1785783967,
size: 0.5,
source: 178578,
target: 3967 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 3770) {
n.size = n.size + 10;
if ( n.size > biggest_node_size ){
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//check if content already exist
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//check if content already exist
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//check if content already exist
// update node size depending on the amount of edges
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target: 3965 });
//check if content already exist
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x_site = x_node + ((Math.random() * 2)-1) - offset_left;
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x_site = x_node + ((Math.random() * 2)-1) + offset_left;
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y_site = y_node + ((Math.random() * 2)-1) - offset_left;
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label: 'Anita Beggiato',
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url: 'https://research.pasteur.fr/wp-content/uploads/2015/09/research.pasteur.fr_beggiato-150x150.png',
page_url: 'https://research.pasteur.fr/en/epartner/anita-beggiato/',
x: x_site,
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label: 'Frédérique Amsellem',
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url: 'https://research.pasteur.fr/wp-content/uploads/2015/09/research.pasteur.fr_frederique_amsellem-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/epartner/frederique-amsellem/',
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y: y_site,
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//check if content already exist
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//check if content already exist
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label: 'SOFTWARE: MicroDraw',
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type: 'image',
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label: 'SOFTWARE: Brain Catalogue',
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label: 'SOFTWARE: BrainSpell',
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type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/software/brainspell/',
size: 24,
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n.size = n.size + 10;
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if (n.id == 36) {
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n.size = biggest_node_size;
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//link to content
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size: 0.5,
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var y_node = Math.sin(2 * 27 * Math.PI / N) * 10;
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label: 'PROJECT: Mouse models of ASD',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/09/research.pasteur.fr_mouse-150x150.png',
page_url: 'https://research.pasteur.fr/en/project/mouse-models-of-asd-2/',
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source: 24413,
target: 3770 });
//check if content already exist
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if (n.id == 3962) {
n.size = n.size + 10;
if ( n.size > biggest_node_size ){
biggest_node_size = n.size;
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n.size = biggest_node_size;
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n.size = n.size + 10;
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n.size = biggest_node_size;
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y_site = y_node + ((Math.random() * 2)-1) - offset_left;
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y_site = y_node + ((Math.random() * 2)-1) + offset_left;
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label: '',
type: 'image',
url: '',
page_url: '',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
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//check if content already exist
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x_site = x_node + ((Math.random() * 2)-1) + offset_left;
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y_site = y_node + ((Math.random() * 2)-1) - offset_left;
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y_site = y_node + ((Math.random() * 2)-1) + offset_left;
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label: 'Jean-Pierre Bourgeois',
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page_url: 'https://research.pasteur.fr/en/member/jean-pierre-bourgeois/',
x: x_site,
y: y_site,
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// adding node
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var y_node = Math.sin(2 * 28 * Math.PI / N) * 10;
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url: 'https://research.pasteur.fr/wp-content/uploads/2015/09/research.pasteur.fr_melatonin-150x150.png',
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biggest_node_size = n.size;
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n.size = biggest_node_size;
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n.size = n.size + 10;
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biggest_node_size = n.size;
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g.nodes.forEach(function(n) {
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n.size = biggest_node_size;
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//check if content already exist
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n.size = n.size + 10;
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biggest_node_size = n.size;
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n.size = n.size + 10;
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//check if content already exist
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n.size = n.size + 10;
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n.size = biggest_node_size;
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target: 3960 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 101504) {
n.size = n.size + 10;
if ( n.size > biggest_node_size ){
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var y_node = Math.sin(2 * 29 * Math.PI / N) * 10;
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label: 'PROJECT: Brain imaging and genetics',
x: x_node,
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source: 24409,
target: 3770 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 3968) {
n.size = n.size + 10;
if ( n.size > biggest_node_size ){
biggest_node_size = n.size;
}
}
});
g.nodes.forEach(function(n) {
if (n.id == 36) {
if ( n.size < biggest_node_size ){
n.size = biggest_node_size;
}
}
});
//link to content
g.edges.push({
id: 244093968,
size: 0.5,
source: 24409,
target: 3968 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 3965) {
n.size = n.size + 10;
if ( n.size > biggest_node_size ){
biggest_node_size = n.size;
}
}
});
g.nodes.forEach(function(n) {
if (n.id == 36) {
if ( n.size < biggest_node_size ){
n.size = biggest_node_size;
}
}
});
//link to content
g.edges.push({
id: 244093965,
size: 0.5,
source: 24409,
target: 3965 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 3970,
label: '',
type: 'image',
url: '',
page_url: '',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 244093970,
size: 0.5,
source: 24409,
target: 3970 });
// adding node
var x_node = Math.cos(2 * 30 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 30 * Math.PI / N) * 10;
g.nodes.push({
id: 24309,
label: 'TOOL: Brain protein-protein interactions visualizer',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2016/02/research.pasteur.fr_brain_ppi-150x150.png',
page_url: 'https://research.pasteur.fr/en/tool/brain-protein-protein-interactions-visualizer/',
size: 24,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 3624309,
size: 0.5,
source: 36,
target: 24309 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 3967) {
n.size = n.size + 10;
if ( n.size > biggest_node_size ){
biggest_node_size = n.size;
}
}
});
g.nodes.forEach(function(n) {
if (n.id == 36) {
if ( n.size < biggest_node_size ){
n.size = biggest_node_size;
}
}
});
//link to content
g.edges.push({
id: 243093967,
size: 0.5,
source: 24309,
target: 3967 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 3770) {
n.size = n.size + 10;
if ( n.size > biggest_node_size ){
biggest_node_size = n.size;
}
}
});
g.nodes.forEach(function(n) {
if (n.id == 36) {
if ( n.size < biggest_node_size ){
n.size = biggest_node_size;
}
}
});
//link to content
g.edges.push({
id: 243093770,
size: 0.5,
source: 24309,
target: 3770 });
// adding node
var x_node = Math.cos(2 * 31 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 31 * Math.PI / N) * 10;
g.nodes.push({
id: 26,
label: 'DEPARTMENT: Neuroscience',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2014/09/brain_artwork_cells_1920x1080_24208-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/department/neuroscience/',
size: 24,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 3626,
size: 0.5,
source: 36,
target: 26 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 134269,
label: 'Rebecca Pavillard',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2019/10/research_pasteur-pavillard-150x150.png',
page_url: 'https://research.pasteur.fr/en/member/rebecca-pavillard/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 26134269,
size: 0.5,
source: 26,
target: 134269 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 154625,
label: 'Assunta Pelosi',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2021/02/research_pasteur-assunta-pelosi-img-20190929-142019-3-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/assunta-pelosi/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 26154625,
size: 0.5,
source: 26,
target: 154625 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 2489) {
n.size = n.size + 10;
if ( n.size > biggest_node_size ){
biggest_node_size = n.size;
}
}
});
g.nodes.forEach(function(n) {
if (n.id == 36) {
if ( n.size < biggest_node_size ){
n.size = biggest_node_size;
}
}
});
//link to content
g.edges.push({
id: 262489,
size: 0.5,
source: 26,
target: 2489 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 3801) {
n.size = n.size + 10;
if ( n.size > biggest_node_size ){
biggest_node_size = n.size;
}
}
});
g.nodes.forEach(function(n) {
if (n.id == 36) {
if ( n.size < biggest_node_size ){
n.size = biggest_node_size;
}
}
});
//link to content
g.edges.push({
id: 263801,
size: 0.5,
source: 26,
target: 3801 });
var s = new sigma({
//container: document.getElementById('graph-main'),
graph: g,
renderer: {
// IMPORTANT:
// This works only with the canvas renderer, so the
// renderer type set as "canvas" is necessary here.
container: document.getElementById('graph-main'),
type: 'canvas'
},
settings: {
minNodeSize: 12,
maxNodeSize: 30,
mouseWheelEnabled: false,
font: 'Montserrat',
labelThreshold:25,
borderSize:1,
defaultNodeBorderColor: '#333',
sideMargin:25,
}
});
// We first need to save the original colors of our
// nodes and edges, like this:
s.graph.nodes().forEach(function(n) {
n.originalColor = n.color;
//console.log(n.id);
//console.log(s.graph.nodes(n.id));
});
s.graph.edges().forEach(function(e) {
e.originalColor = e.color;
});
// When a node is clicked, we check for each node
// if it is a neighbor of the clicked one. If not,
// we set its color as grey, and else, it takes its
// original color.
// We do the same for the edges, and we only keep
// edges that have both extremities colored.
s.bind('clickNode', function(e) {
var nodeId = e.data.node.id,
toKeep = s.graph.neighbors(nodeId);
toKeep[nodeId] = e.data.node;
s.graph.nodes().forEach(function(n) {
if (toKeep[n.id])
n.color = '#35a9f5';
else
n.color = '#dddddd';
});
s.graph.edges().forEach(function(e) {
if (toKeep[e.source] && toKeep[e.target])
e.color = '#35a9f5';
else
e.color = '#dddddd';
});
// Since the data has been modified, we need to
// call the refresh method to make the colors
// update effective.
s.refresh();
});
// When the stage is clicked, we just color each
// node and edge with its original color.
s.bind('clickStage', function(e) {
s.graph.nodes().forEach(function(n) {
n.color = n.originalColor;
});
s.graph.edges().forEach(function(e) {
e.color = e.originalColor;
});
// Same as in the previous event:
s.refresh();
});
s.bind("doubleClickNode", function (e) {
$("#canvas-wrap, .sigma-scene, .sigma-mouse").val();
ajax_load_page( e.data.node.page_url );
});
var c = s.camera;
s.bind("rightClickStage", function (e) {
sigma.misc.animation.camera(c, {
ratio: c.ratio * c.settings('zoomingRatio')
}, {
duration: 200
});
});
// Configure the noverlap layout:
var noverlapListener = s.configNoverlap({
nodeMargin: 10,
scaleNodes: 0.3,
gridSize: 1,
easing: 'quadraticInOut', // animation transition function
duration: 4000 // animation duration. Long here for the purposes of this example only
});
// Bind the events:
noverlapListener.bind('start stop interpolate', function(e) {
//console.log(e.type);
if(e.type === 'start') {
//console.time('noverlap');
}
if(e.type === 'interpolate') {
//console.timeEnd('noverlap');
}
});
// Start the layout:
s.startNoverlap();
//s.refresh();
// Initialize the dragNodes plugin:
var dragListener = sigma.plugins.dragNodes(s, s.renderers[0]);
dragListener.bind('startdrag', function(event) {
});
dragListener.bind('drag', function(event) {
});
dragListener.bind('drop', function(event) {
});
dragListener.bind('dragend', function(event) {
});