GUIDE
- Left-click and drag the background to move the graph
- Left-click and drag the nodes to reorganize
- Left-click a node to view first level connections
- Double left-click a node to navigate to its page
- Double left-click the background to zoom in
- Right-click the background to zoom out
sigma.utils.pkg('sigma.canvas.nodes');
sigma.canvas.nodes.image = (function() {
var _cache = {},
_loading = {},
_callbacks = {};
// Return the renderer itself:
var renderer = function(node, context, settings) {
var args = arguments,
prefix = settings('prefix') || '',
size = node[prefix + 'size'],
color = node.color || settings('defaultNodeColor'),
url = node.url;
if (_cache[url]) {
context.save();
// Draw the clipping disc:
context.beginPath();
context.arc(
node[prefix + 'x'],
node[prefix + 'y'],
node[prefix + 'size'],
0,
Math.PI * 2,
true
);
context.closePath();
context.clip();
// Draw the image
context.drawImage(
_cache[url],
node[prefix + 'x'] - size,
node[prefix + 'y'] - size,
2 * size,
2 * size
);
// Quit the "clipping mode":
context.restore();
// Draw the border:
context.beginPath();
context.arc(
node[prefix + 'x'],
node[prefix + 'y'],
node[prefix + 'size'],
0,
Math.PI * 2,
true
);
context.lineWidth = 1;
context.strokeStyle = node.color || settings('defaultNodeColor');
context.stroke();
} else {
sigma.canvas.nodes.image.cache(url);
sigma.canvas.nodes.def.apply(
sigma.canvas.nodes,
args
);
}
};
// Let's add a public method to cache images, to make it possible to
// preload images before the initial rendering:
renderer.cache = function(url, callback) {
if (callback)
_callbacks[url] = callback;
if (_loading[url])
return;
var img = new Image();
img.onload = function() {
_loading[url] = false;
_cache[url] = img;
if (_callbacks[url]) {
_callbacks[url].call(this, img);
delete _callbacks[url];
}
};
_loading[url] = true;
img.src = url;
};
return renderer;
})();
var i,
s,
o,
offset_left = 0.5,
N = 1,
E = 40,
C = 5,
d = 0.5,
cs = [],
g = {
nodes: [],
edges: []
};
if (!sigma.classes.graph.hasMethod('neighbors')){
sigma.classes.graph.addMethod('neighbors', function(nodeId) {
var k,
neighbors = {},
index = this.allNeighborsIndex[nodeId] || {};
for (k in index)
neighbors[k] = this.nodesIndex[k];
return neighbors;
});
}
//adding the central node
g.nodes.push({
id: 194643,
label: 'Artificial Intelligence at the Institut Pasteur',
type: 'image',
url: '',
x: 0,
y: 0,
size: 30,
color: '#DDDDDD'
});
var x_node = Math.cos(2 * 0 * Math.PI / N) * 2;
var y_node = Math.sin(2 * 0 * Math.PI / N) * 2;
N=10
//check if content already exist
x_site = Math.cos(2 * 0 * Math.PI / N) * 2;
y_site = Math.sin(2 * 0 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 58995,
label: 'Mallory Perrin-Wolff',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2017/05/research_pasteur-mallory-perrin-wolff-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/mallory-perrin-wolff/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 19464358995,
size: 0.5,
source: 194643,
target: 58995 });
//check if content already exist
x_site = Math.cos(2 * 1 * Math.PI / N) * 2;
y_site = Math.sin(2 * 1 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 187008,
label: 'Elodie Dandelot',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2022/09/research_pasteur-elodie-dandelot-1516808045836-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/elodie-dandelot/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 194643187008,
size: 0.5,
source: 194643,
target: 187008 });
//check if content already exist
x_site = Math.cos(2 * 2 * Math.PI / N) * 2;
y_site = Math.sin(2 * 2 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 195170,
label: 'Laura Cantini',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2023/01/research_pasteur-laura-cantini-lauracantini-33-modifier-hdprint-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/laura-cantini/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 194643195170,
size: 0.5,
source: 194643,
target: 195170 });
//check if content already exist
x_site = Math.cos(2 * 3 * Math.PI / N) * 2;
y_site = Math.sin(2 * 3 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 3957,
label: 'David Bikard',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2016/01/research.pasteur.fr_photo_cropped-1-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/david-bikard/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 1946433957,
size: 0.5,
source: 194643,
target: 3957 });
//check if content already exist
x_site = Math.cos(2 * 4 * Math.PI / N) * 2;
y_site = Math.sin(2 * 4 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 119690,
label: 'Rayan Chikhi',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2019/05/research_pasteur-photo_pasteur-150x150.png',
page_url: 'https://research.pasteur.fr/en/member/rayan-chikhi/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 194643119690,
size: 0.5,
source: 194643,
target: 119690 });
//check if content already exist
x_site = Math.cos(2 * 5 * Math.PI / N) * 2;
y_site = Math.sin(2 * 5 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 70499,
label: 'Olivier Sperandio',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2016/05/research.pasteur.fr_sperandio-id-photo-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/olivier-sperandio/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 19464370499,
size: 0.5,
source: 194643,
target: 70499 });
//check if content already exist
x_site = Math.cos(2 * 6 * Math.PI / N) * 2;
y_site = Math.sin(2 * 6 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 50133,
label: 'Jean-Baptiste Masson',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2018/06/research_pasteur-jbm_photo_serieux_low_res-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/jean-baptiste-masson/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 19464350133,
size: 0.5,
source: 194643,
target: 50133 });
//check if content already exist
x_site = Math.cos(2 * 7 * Math.PI / N) * 2;
y_site = Math.sin(2 * 7 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 117326,
label: 'Max Bonomi',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2019/03/research_pasteur-njkzmdmz-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/massimiliano-bonomi/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 194643117326,
size: 0.5,
source: 194643,
target: 117326 });
//check if content already exist
x_site = Math.cos(2 * 8 * Math.PI / N) * 2;
y_site = Math.sin(2 * 8 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 3968,
label: 'Roberto Toro',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/08/research.pasteur.fr_toror-150x150.png',
page_url: 'https://research.pasteur.fr/en/member/roberto-toro/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 1946433968,
size: 0.5,
source: 194643,
target: 3968 });
//check if content already exist
x_site = Math.cos(2 * 9 * Math.PI / N) * 2;
y_site = Math.sin(2 * 9 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 4977,
label: 'Christophe Zimmer',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/05/research_pasteur-christophe-zimmer-chz-photo-resized-bw-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/christophe-zimmer/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 1946434977,
size: 0.5,
source: 194643,
target: 4977 });
N=34
// update positions
x_node = Math.cos(2 * 0 * Math.PI / N) * 10;
y_node = Math.sin(2 * 0 * Math.PI / N) * 10;
// adding node
var x_node = Math.cos(2 * 0 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 0 * Math.PI / N) * 10;
g.nodes.push({
id: 204257,
label: 'TEAM: Quantitative RNA imaging',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/team/quantitative-rna-imaging/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 194643204257,
size: 0.5,
source: 194643,
target: 204257 });
// adding node
var x_node = Math.cos(2 * 1 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 1 * Math.PI / N) * 10;
g.nodes.push({
id: 195173,
label: 'TEAM: Machine Learning for integrative genomics',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/team/machine-learning-for-integrative-genomics/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 194643195173,
size: 0.5,
source: 194643,
target: 195173 });
// adding node
var x_node = Math.cos(2 * 2 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 2 * Math.PI / N) * 10;
g.nodes.push({
id: 193440,
label: 'TEAM: Structural biology of infectious diseases',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/team/structural-biology-of-infectious-diseases/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 194643193440,
size: 0.5,
source: 194643,
target: 193440 });
// adding node
var x_node = Math.cos(2 * 3 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 3 * Math.PI / N) * 10;
g.nodes.push({
id: 175015,
label: 'TEAM: Bacterial Cell Cycle Mechanisms',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/team/bacterial-cell-cycle-mechanisms/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 194643175015,
size: 0.5,
source: 194643,
target: 175015 });
// adding node
var x_node = Math.cos(2 * 4 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 4 * Math.PI / N) * 10;
g.nodes.push({
id: 165876,
label: 'TEAM: Applied and Theoretical Neuroanatomy',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/team/applied-and-theoretical-neuroanatomy/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 194643165876,
size: 0.5,
source: 194643,
target: 165876 });
// adding node
var x_node = Math.cos(2 * 5 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 5 * Math.PI / N) * 10;
g.nodes.push({
id: 158344,
label: 'TEAM: Diagnostic Test Innovation and Development Core Facility',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/team/diagnostic-test-innovation-and-development-core-facility/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 194643158344,
size: 0.5,
source: 194643,
target: 158344 });
// adding node
var x_node = Math.cos(2 * 6 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 6 * Math.PI / N) * 10;
g.nodes.push({
id: 153906,
label: 'TEAM: Computational Structural Biology',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/team/computational-structural-biology/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 194643153906,
size: 0.5,
source: 194643,
target: 153906 });
// adding node
var x_node = Math.cos(2 * 7 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 7 * Math.PI / N) * 10;
g.nodes.push({
id: 152957,
label: 'TEAM: Fungal Heterogeneity',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2021/01/research_pasteur-iuliana-ene-hyphae-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/fungal-heterogeneity/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 194643152957,
size: 0.5,
source: 194643,
target: 152957 });
// adding node
var x_node = Math.cos(2 * 8 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 8 * Math.PI / N) * 10;
g.nodes.push({
id: 143968,
label: 'TEAM: Translational Immunology',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/team/translational-immunology/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 194643143968,
size: 0.5,
source: 194643,
target: 143968 });
// adding node
var x_node = Math.cos(2 * 9 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 9 * Math.PI / N) * 10;
g.nodes.push({
id: 119692,
label: 'TEAM: Sequence Bioinformatics',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/team/sequence-bioinformatics/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 194643119692,
size: 0.5,
source: 194643,
target: 119692 });
// adding node
var x_node = Math.cos(2 * 10 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 10 * Math.PI / N) * 10;
g.nodes.push({
id: 94978,
label: 'TEAM: Neural Circuit Dynamics and Decision Making',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/team/neural-circuit-dynamics-and-decision-making/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 19464394978,
size: 0.5,
source: 194643,
target: 94978 });
// adding node
var x_node = Math.cos(2 * 11 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 11 * Math.PI / N) * 10;
g.nodes.push({
id: 78781,
label: 'TEAM: Cell death and epithelial homeostasis',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2017/01/research.pasteur.fr_bandeau-g5-r-levayer-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/cell-death-and-epithelial-homeostasis/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 19464378781,
size: 0.5,
source: 194643,
target: 78781 });
// adding node
var x_node = Math.cos(2 * 12 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 12 * Math.PI / N) * 10;
g.nodes.push({
id: 70654,
label: 'TEAM: Decision and Bayesian Computation',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/team/decision-and-bayesian-computation/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 19464370654,
size: 0.5,
source: 194643,
target: 70654 });
// adding node
var x_node = Math.cos(2 * 13 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 13 * Math.PI / N) * 10;
g.nodes.push({
id: 70664,
label: 'TEAM: Chemoinformatics and proteochemometrics',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2016/05/research_pasteur-group-olivier-sperandio-groupe-o-sperandio-150x150.png',
page_url: 'https://research.pasteur.fr/en/team/group-olivier-sperandio/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 19464370664,
size: 0.5,
source: 194643,
target: 70664 });
// adding node
var x_node = Math.cos(2 * 14 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 14 * Math.PI / N) * 10;
g.nodes.push({
id: 64152,
label: 'TEAM: Zebrafish Neurogenetics',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2016/02/research_pasteur-enzebrafish-neurogeneticsfrneurogenetique-du-poisson-zebre-research-pasteur-enzebrafish-neurogeneticsfrneurogenetique-du-poisson-zebre-bandeau-unite-l-bally-cuif-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/zebrafish-neurogenetics/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 19464364152,
size: 0.5,
source: 194643,
target: 64152 });
// adding node
var x_node = Math.cos(2 * 15 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 15 * Math.PI / N) * 10;
g.nodes.push({
id: 35649,
label: 'TEAM: Mechanisms of epigenetic inheritance',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/08/research_pasteur-enmechanisms-of-epigenetic-inheritancefrmecanismes-de-lheredite-epigenetique-bandeau-cecere-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/mechanisms-of-epigenetic-inheritance/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 19464335649,
size: 0.5,
source: 194643,
target: 35649 });
// adding node
var x_node = Math.cos(2 * 16 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 16 * Math.PI / N) * 10;
g.nodes.push({
id: 24279,
label: 'TEAM: Bacterial transmembrane systems',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_institutpasteur_i05280-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/bacterial-transmembrane-systems/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 19464324279,
size: 0.5,
source: 194643,
target: 24279 });
// adding node
var x_node = Math.cos(2 * 17 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 17 * Math.PI / N) * 10;
g.nodes.push({
id: 24396,
label: 'TEAM: RNA Biology of Influenza Virus',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2018/08/research_pasteur-bandeau-groupe-naffakh-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/rna-biology-of-influenza-virus/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 19464324396,
size: 0.5,
source: 194643,
target: 24396 });
// adding node
var x_node = Math.cos(2 * 18 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 18 * Math.PI / N) * 10;
g.nodes.push({
id: 24210,
label: 'TEAM: Group: Shaynoor Dramsi',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_institutpasteur_27823-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/group-shaynoor-dramsi/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 19464324210,
size: 0.5,
source: 194643,
target: 24210 });
// adding node
var x_node = Math.cos(2 * 19 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 19 * Math.PI / N) * 10;
g.nodes.push({
id: 18489,
label: 'TEAM: Bioinformatics and Biostatistics HUB',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/06/research.pasteur.fr_complex-system-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/bioinformatics-and-biostatistics-hub/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 19464318489,
size: 0.5,
source: 194643,
target: 18489 });
// adding node
var x_node = Math.cos(2 * 20 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 20 * Math.PI / N) * 10;
g.nodes.push({
id: 6462,
label: 'TEAM: Membrane Traffic and Cell Division',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/06/research.pasteur.fr_mtra-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/membrane-traffic-and-cell-division/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 1946436462,
size: 0.5,
source: 194643,
target: 6462 });
// adding node
var x_node = Math.cos(2 * 21 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 21 * Math.PI / N) * 10;
g.nodes.push({
id: 6108,
label: 'TEAM: Dynamic Regulation of Morphogenesis',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2019/07/research_pasteur-unite-j-gros-29-07-19-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/dynamic-regulation-of-morphogenesis/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 1946436108,
size: 0.5,
source: 194643,
target: 6108 });
// adding node
var x_node = Math.cos(2 * 22 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 22 * Math.PI / N) * 10;
g.nodes.push({
id: 6120,
label: 'TEAM: Synthetic Biology',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_institutpasteur_i03590-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/synthetic-biology/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 1946436120,
size: 0.5,
source: 194643,
target: 6120 });
// adding node
var x_node = Math.cos(2 * 23 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 23 * Math.PI / N) * 10;
g.nodes.push({
id: 6124,
label: 'TEAM: Computational Systems Biomedicine',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/06/research.pasteur.fr_system-biology1-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/csb/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 1946436124,
size: 0.5,
source: 194643,
target: 6124 });
// adding node
var x_node = Math.cos(2 * 24 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 24 * Math.PI / N) * 10;
g.nodes.push({
id: 6135,
label: 'TEAM: Imaging and Modeling',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/06/research.pasteur.fr_superres-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/imaging-and-modeling/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 1946436135,
size: 0.5,
source: 194643,
target: 6135 });
// adding node
var x_node = Math.cos(2 * 25 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 25 * Math.PI / N) * 10;
g.nodes.push({
id: 6150,
label: 'TEAM: Structural Microbiology',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/05/research.pasteur.fr_structural-microbiology-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/structural-microbiology/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 1946436150,
size: 0.5,
source: 194643,
target: 6150 });
// adding node
var x_node = Math.cos(2 * 26 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 26 * Math.PI / N) * 10;
g.nodes.push({
id: 6151,
label: 'TEAM: Structural Bioinformatics',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/05/research.pasteur.fr_structural-bioinformatics-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/structural-bioinformatics/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 1946436151,
size: 0.5,
source: 194643,
target: 6151 });
// adding node
var x_node = Math.cos(2 * 27 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 27 * Math.PI / N) * 10;
g.nodes.push({
id: 6143,
label: 'TEAM: Dynamics of Developmental Decisions in Drosophila',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/05/research.pasteur.fr_drosophila-developmental-genetics-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/4d/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 1946436143,
size: 0.5,
source: 194643,
target: 6143 });
// adding node
var x_node = Math.cos(2 * 28 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 28 * Math.PI / N) * 10;
g.nodes.push({
id: 6172,
label: 'TEAM: Dynamics of Immune Responses',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/05/research.pasteur.fr_dynamics-of-immune-responses4-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/dynamics-of-immune-responses/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 1946436172,
size: 0.5,
source: 194643,
target: 6172 });
// adding node
var x_node = Math.cos(2 * 29 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 29 * Math.PI / N) * 10;
g.nodes.push({
id: 6213,
label: 'TEAM: Oncogenic Virus Epidemiology and Pathophysiology',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/05/research.pasteur.fr_oncogenic-virus-epidemiology-and-pathophysiology-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/oncogenic-virus-epidemiology-and-pathophysiology/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 1946436213,
size: 0.5,
source: 194643,
target: 6213 });
// adding node
var x_node = Math.cos(2 * 30 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 30 * Math.PI / N) * 10;
g.nodes.push({
id: 6223,
label: 'TEAM: Structural Virology',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/team/structural-virology/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 1946436223,
size: 0.5,
source: 194643,
target: 6223 });
// adding node
var x_node = Math.cos(2 * 31 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 31 * Math.PI / N) * 10;
g.nodes.push({
id: 794,
label: 'TEAM: Crystallography',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/02/research.pasteur.fr_crystallography-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/crystallography/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 194643794,
size: 0.5,
source: 194643,
target: 794 });
// adding node
var x_node = Math.cos(2 * 32 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 32 * Math.PI / N) * 10;
g.nodes.push({
id: 517,
label: 'TEAM: Biological Image Analysis',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2014/12/grid01-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/bioimage-analysis/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 194643517,
size: 0.5,
source: 194643,
target: 517 });
// adding node
var x_node = Math.cos(2 * 33 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 33 * Math.PI / N) * 10;
g.nodes.push({
id: 57,
label: 'TEAM: Auditory Therapies Innovation Lab',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2014/09/dna-genes-1405932776-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/auditory-therapies-innovation-lab/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 19464357,
size: 0.5,
source: 194643,
target: 57 });
var s = new sigma({
//container: document.getElementById('graph-main'),
graph: g,
renderer: {
// IMPORTANT:
// This works only with the canvas renderer, so the
// renderer type set as "canvas" is necessary here.
container: document.getElementById('graph-main'),
type: 'canvas'
},
settings: {
minNodeSize: 6,
maxNodeSize: 30,
mouseWheelEnabled: false,
font: 'Montserrat',
labelThreshold:25,
borderSize:1,
defaultNodeBorderColor: '#333',
sideMargin:25,
}
});
// We first need to save the original colors of our
// nodes and edges, like this:
s.graph.nodes().forEach(function(n) {
n.originalColor = n.color;
//console.log(n.id);
//console.log(s.graph.nodes(n.id));
});
s.graph.edges().forEach(function(e) {
e.originalColor = e.color;
});
// When a node is clicked, we check for each node
// if it is a neighbor of the clicked one. If not,
// we set its color as grey, and else, it takes its
// original color.
// We do the same for the edges, and we only keep
// edges that have both extremities colored.
s.bind('clickNode', function(e) {
var nodeId = e.data.node.id,
toKeep = s.graph.neighbors(nodeId);
toKeep[nodeId] = e.data.node;
s.graph.nodes().forEach(function(n) {
if (toKeep[n.id])
n.color = '#35a9f5';
else
n.color = '#dddddd';
});
s.graph.edges().forEach(function(e) {
if (toKeep[e.source] && toKeep[e.target])
e.color = '#35a9f5';
else
e.color = '#dddddd';
});
// Since the data has been modified, we need to
// call the refresh method to make the colors
// update effective.
s.refresh();
});
// When the stage is clicked, we just color each
// node and edge with its original color.
s.bind('clickStage', function(e) {
s.graph.nodes().forEach(function(n) {
n.color = n.originalColor;
});
s.graph.edges().forEach(function(e) {
e.color = e.originalColor;
});
// Same as in the previous event:
s.refresh();
});
s.bind("doubleClickNode", function (e) {
$("#canvas-wrap, .sigma-scene, .sigma-mouse").val();
ajax_load_page( e.data.node.page_url );
});
var c = s.camera;
s.bind("rightClickStage", function (e) {
sigma.misc.animation.camera(c, {
ratio: c.ratio * c.settings('zoomingRatio')
}, {
duration: 200
});
});
// Configure the noverlap layout:
var noverlapListener = s.configNoverlap({
nodeMargin: 5,
scaleNodes: 0.3,
gridSize: 1,
easing: 'quadraticInOut', // animation transition function
duration: 4000 // animation duration. Long here for the purposes of this example only
});
// Bind the events:
noverlapListener.bind('start stop interpolate', function(e) {
//console.log(e.type);
if(e.type === 'start') {
//console.time('noverlap');
}
if(e.type === 'interpolate') {
//console.timeEnd('noverlap');
}
});
// Start the layout:
s.startNoverlap();
//s.refresh();
// Initialize the dragNodes plugin:
var dragListener = sigma.plugins.dragNodes(s, s.renderers[0]);
dragListener.bind('startdrag', function(event) {
});
dragListener.bind('drag', function(event) {
});
dragListener.bind('drop', function(event) {
});
dragListener.bind('dragend', function(event) {
});