GUIDE
- Left-click and drag the background to move the graph
- Left-click and drag the nodes to reorganize
- Left-click a node to view first level connections
- Double left-click a node to navigate to its page
- Double left-click the background to zoom in
- Right-click the background to zoom out
sigma.utils.pkg('sigma.canvas.nodes');
sigma.canvas.nodes.image = (function() {
var _cache = {},
_loading = {},
_callbacks = {};
// Return the renderer itself:
var renderer = function(node, context, settings) {
var args = arguments,
prefix = settings('prefix') || '',
size = node[prefix + 'size'],
color = node.color || settings('defaultNodeColor'),
url = node.url;
if (_cache[url]) {
context.save();
// Draw the clipping disc:
context.beginPath();
context.arc(
node[prefix + 'x'],
node[prefix + 'y'],
node[prefix + 'size'],
0,
Math.PI * 2,
true
);
context.closePath();
context.clip();
// Draw the image
context.drawImage(
_cache[url],
node[prefix + 'x'] - size,
node[prefix + 'y'] - size,
2 * size,
2 * size
);
// Quit the "clipping mode":
context.restore();
// Draw the border:
context.beginPath();
context.arc(
node[prefix + 'x'],
node[prefix + 'y'],
node[prefix + 'size'],
0,
Math.PI * 2,
true
);
context.lineWidth = 1;
context.strokeStyle = node.color || settings('defaultNodeColor');
context.stroke();
} else {
sigma.canvas.nodes.image.cache(url);
sigma.canvas.nodes.def.apply(
sigma.canvas.nodes,
args
);
}
};
// Let's add a public method to cache images, to make it possible to
// preload images before the initial rendering:
renderer.cache = function(url, callback) {
if (callback)
_callbacks[url] = callback;
if (_loading[url])
return;
var img = new Image();
img.onload = function() {
_loading[url] = false;
_cache[url] = img;
if (_callbacks[url]) {
_callbacks[url].call(this, img);
delete _callbacks[url];
}
};
_loading[url] = true;
img.src = url;
};
return renderer;
})();
var i,
s,
o,
offset_left = 0.5,
N = 1,
E = 40,
C = 5,
d = 0.5,
cs = [],
g = {
nodes: [],
edges: []
};
if (!sigma.classes.graph.hasMethod('neighbors')){
sigma.classes.graph.addMethod('neighbors', function(nodeId) {
var k,
neighbors = {},
index = this.allNeighborsIndex[nodeId] || {};
for (k in index)
neighbors[k] = this.nodesIndex[k];
return neighbors;
});
}
//adding the central node
g.nodes.push({
id: 160998,
label: 'Drug Discovery & Screening at Institut Pasteur',
type: 'image',
url: '',
x: 0,
y: 0,
size: 30,
color: '#DDDDDD'
});
var x_node = Math.cos(2 * 0 * Math.PI / N) * 2;
var y_node = Math.sin(2 * 0 * Math.PI / N) * 2;
N=11
//check if content already exist
x_site = Math.cos(2 * 0 * Math.PI / N) * 2;
y_site = Math.sin(2 * 0 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 161202,
label: 'Emilie Boutet',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2021/06/research_pasteur-emilie-boutet-essai-jpeg-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/emilie-boutet/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 160998161202,
size: 0.5,
source: 160998,
target: 161202 });
//check if content already exist
x_site = Math.cos(2 * 1 * Math.PI / N) * 2;
y_site = Math.sin(2 * 1 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 7850,
label: 'Fabrice Agou',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/06/research.pasteur.fr_image010-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/fabrice-agou/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 1609987850,
size: 0.5,
source: 160998,
target: 7850 });
//check if content already exist
x_site = Math.cos(2 * 2 * Math.PI / N) * 2;
y_site = Math.sin(2 * 2 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 4357,
label: 'Nienke Buddelmeijer',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/10/research.pasteur.fr_nienke3a-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/nienke-buddelmeijer/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 1609984357,
size: 0.5,
source: 160998,
target: 4357 });
//check if content already exist
x_site = Math.cos(2 * 3 * Math.PI / N) * 2;
y_site = Math.sin(2 * 3 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 152955,
label: 'Iuliana Ene',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2021/01/research_pasteur-iuliana-ene-ene-iuliana-1-copy-scaled-e1612802810122-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/iuliana-ene/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 160998152955,
size: 0.5,
source: 160998,
target: 152955 });
//check if content already exist
x_site = Math.cos(2 * 4 * Math.PI / N) * 2;
y_site = Math.sin(2 * 4 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 62876,
label: 'Marcel Hollenstein',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2016/01/research.pasteur.fr_thrashmanlessthrash-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/marcel-hollenstein/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 16099862876,
size: 0.5,
source: 160998,
target: 62876 });
//check if content already exist
x_site = Math.cos(2 * 5 * Math.PI / N) * 2;
y_site = Math.sin(2 * 5 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 4923,
label: 'Nadia Naffakh',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/08/research.pasteur.fr_photo_web1-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/nadia-naffakh/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 1609984923,
size: 0.5,
source: 160998,
target: 4923 });
//check if content already exist
x_site = Math.cos(2 * 6 * Math.PI / N) * 2;
y_site = Math.sin(2 * 6 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 4847,
label: 'Eric Prina',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/09/research.pasteur.fr_eric-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/eric-prina/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 1609984847,
size: 0.5,
source: 160998,
target: 4847 });
//check if content already exist
x_site = Math.cos(2 * 7 * Math.PI / N) * 2;
y_site = Math.sin(2 * 7 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 4143,
label: 'Ludovic Sauguet',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/05/research_pasteur-ludovic-sauguet-photo-sauguet-ludovic-scaled-e1650635785861-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/ludovic-sauguet/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 1609984143,
size: 0.5,
source: 160998,
target: 4143 });
//check if content already exist
x_site = Math.cos(2 * 8 * Math.PI / N) * 2;
y_site = Math.sin(2 * 8 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 70499,
label: 'Olivier Sperandio',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2016/05/research.pasteur.fr_sperandio-id-photo-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/olivier-sperandio/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 16099870499,
size: 0.5,
source: 160998,
target: 70499 });
//check if content already exist
x_site = Math.cos(2 * 9 * Math.PI / N) * 2;
y_site = Math.sin(2 * 9 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 4186,
label: 'Hélène Strick-Marchand',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_helena-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/helene-strick-marchand/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 1609984186,
size: 0.5,
source: 160998,
target: 4186 });
//check if content already exist
x_site = Math.cos(2 * 10 * Math.PI / N) * 2;
y_site = Math.sin(2 * 10 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 4977,
label: 'Christophe Zimmer',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/05/research_pasteur-christophe-zimmer-chz-photo-resized-bw-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/christophe-zimmer/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 1609984977,
size: 0.5,
source: 160998,
target: 4977 });
N=103
// update positions
x_node = Math.cos(2 * 0 * Math.PI / N) * 10;
y_node = Math.sin(2 * 0 * Math.PI / N) * 10;
// adding node
var x_node = Math.cos(2 * 0 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 0 * Math.PI / N) * 10;
g.nodes.push({
id: 156712,
label: 'TEAM: Brain-immune communication',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/team/brain-immune-communication/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 160998156712,
size: 0.5,
source: 160998,
target: 156712 });
// adding node
var x_node = Math.cos(2 * 1 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 1 * Math.PI / N) * 10;
g.nodes.push({
id: 153906,
label: 'TEAM: Computational Structural Biology',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/team/computational-structural-biology/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 160998153906,
size: 0.5,
source: 160998,
target: 153906 });
// adding node
var x_node = Math.cos(2 * 2 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 2 * Math.PI / N) * 10;
g.nodes.push({
id: 152957,
label: 'TEAM: Fungal Heterogeneity',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2021/01/research_pasteur-iuliana-ene-hyphae-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/fungal-heterogeneity/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 160998152957,
size: 0.5,
source: 160998,
target: 152957 });
// adding node
var x_node = Math.cos(2 * 3 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 3 * Math.PI / N) * 10;
g.nodes.push({
id: 148606,
label: 'TEAM: Immunobiology of Aspergillus',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/team/immunobiology-of-aspergillus/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 160998148606,
size: 0.5,
source: 160998,
target: 148606 });
// adding node
var x_node = Math.cos(2 * 4 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 4 * Math.PI / N) * 10;
g.nodes.push({
id: 145924,
label: 'TEAM: Group : Bacterial Pathogenesis and Antibacterial Agents',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/team/group-olivier-dussurget/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 160998145924,
size: 0.5,
source: 160998,
target: 145924 });
// adding node
var x_node = Math.cos(2 * 5 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 5 * Math.PI / N) * 10;
g.nodes.push({
id: 143968,
label: 'TEAM: Translational Immunology',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/team/translational-immunology/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 160998143968,
size: 0.5,
source: 160998,
target: 143968 });
// adding node
var x_node = Math.cos(2 * 6 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 6 * Math.PI / N) * 10;
g.nodes.push({
id: 141404,
label: 'TEAM: Group : Actin-activated nucleotidyl cyclases',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/team/group-undine-mechold/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 160998141404,
size: 0.5,
source: 160998,
target: 141404 });
// adding node
var x_node = Math.cos(2 * 7 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 7 * Math.PI / N) * 10;
g.nodes.push({
id: 139045,
label: 'TEAM: Plasmodium Infection and Transmission',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2020/02/research_pasteur-engroup-plasmodium-liver-biologyfrgroup-liliana-mancio-silva-photo-bandeau-l-mancio-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/biology-of-plasmodium-infection-and-transmission/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 160998139045,
size: 0.5,
source: 160998,
target: 139045 });
// adding node
var x_node = Math.cos(2 * 8 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 8 * Math.PI / N) * 10;
g.nodes.push({
id: 133925,
label: 'TEAM: Group: Cell Biology and Viral Infection',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/team/cell-biology-and-viral-infection/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 160998133925,
size: 0.5,
source: 160998,
target: 133925 });
// adding node
var x_node = Math.cos(2 * 9 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 9 * Math.PI / N) * 10;
g.nodes.push({
id: 127390,
label: 'TEAM: Mucosal Inflammation and Immunity',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/team/mucosal-inflammation-and-immunity/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 160998127390,
size: 0.5,
source: 160998,
target: 127390 });
// adding node
var x_node = Math.cos(2 * 10 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 10 * Math.PI / N) * 10;
g.nodes.push({
id: 113577,
label: 'TEAM: Group: Allergy and Autoimmunity',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2018/09/research_pasteur-engroup-allergy-and-autoimmunity-frgroupe-friederike-jonsson-neutro-drops-150x150.png',
page_url: 'https://research.pasteur.fr/en/team/group-friederike-jonsson/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 160998113577,
size: 0.5,
source: 160998,
target: 113577 });
// adding node
var x_node = Math.cos(2 * 11 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 11 * Math.PI / N) * 10;
g.nodes.push({
id: 111545,
label: 'TEAM: Collection of the Institut Pasteur (CIP)',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/team/collection-of-the-institut-pasteur-cip/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 160998111545,
size: 0.5,
source: 160998,
target: 111545 });
// adding node
var x_node = Math.cos(2 * 12 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 12 * Math.PI / N) * 10;
g.nodes.push({
id: 108862,
label: 'TEAM: Mitochondrial Biology',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2018/06/research_pasteur-enmitochondrial-biology-frbiologie-mitochondriale-bandeau-g5-tim-way-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/mitochondrial-biology/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 160998108862,
size: 0.5,
source: 160998,
target: 108862 });
// adding node
var x_node = Math.cos(2 * 13 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 13 * Math.PI / N) * 10;
g.nodes.push({
id: 103216,
label: 'TEAM: Stress Adaptation and Metabolism (SAMe)',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/team/stress-adaptation-metabolism-enterobacteria/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 160998103216,
size: 0.5,
source: 160998,
target: 103216 });
// adding node
var x_node = Math.cos(2 * 14 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 14 * Math.PI / N) * 10;
g.nodes.push({
id: 101330,
label: 'TEAM: Epigenetic Chemical Biology',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2020/04/research_pasteur-unite-p-arimondo-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/chimie-biologique-epigenetique/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 160998101330,
size: 0.5,
source: 160998,
target: 101330 });
// adding node
var x_node = Math.cos(2 * 15 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 15 * Math.PI / N) * 10;
g.nodes.push({
id: 100029,
label: 'TEAM: Physical Microfluidics and Bioengineering',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/team/physical-microfluidics-bioengineering/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 160998100029,
size: 0.5,
source: 160998,
target: 100029 });
// adding node
var x_node = Math.cos(2 * 16 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 16 * Math.PI / N) * 10;
g.nodes.push({
id: 95900,
label: 'TEAM: Physics of Biological Function',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2022/11/research_pasteur-bandeau-unite-t-gregor-v2-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/physics-of-biological-functions/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 16099895900,
size: 0.5,
source: 160998,
target: 95900 });
// adding node
var x_node = Math.cos(2 * 17 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 17 * Math.PI / N) * 10;
g.nodes.push({
id: 94978,
label: 'TEAM: Neural Circuit Dynamics and Decision Making',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/team/neural-circuit-dynamics-and-decision-making/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 16099894978,
size: 0.5,
source: 160998,
target: 94978 });
// adding node
var x_node = Math.cos(2 * 18 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 18 * Math.PI / N) * 10;
g.nodes.push({
id: 94346,
label: 'TEAM: Biodiversity and Epidemiology of Bacterial Pathogens',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/12/research.pasteur.fr_bordetelle-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/biodiversity-and-epidemiology-of-bacterial-pathogens/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 16099894346,
size: 0.5,
source: 160998,
target: 94346 });
// adding node
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page_url: 'https://research.pasteur.fr/en/team/lyssavirus-epidemiology-and-neuropathology/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 1609986180,
size: 0.5,
source: 160998,
target: 6180 });
// adding node
var x_node = Math.cos(2 * 85 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 85 * Math.PI / N) * 10;
g.nodes.push({
id: 6190,
label: 'TEAM: Biology and Genetics of Bacterial Cell Wall',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/05/research.pasteur.fr_biology-and-genetics-of-bacterial-cell-wall-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/biology-and-genetics-of-bacterial-cell-wall/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 1609986190,
size: 0.5,
source: 160998,
target: 6190 });
// adding node
var x_node = Math.cos(2 * 86 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 86 * Math.PI / N) * 10;
g.nodes.push({
id: 6192,
label: 'TEAM: Biology of Spirochetes',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_institutpasteur_i03655-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/biology-of-spirochetes/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 1609986192,
size: 0.5,
source: 160998,
target: 6192 });
// adding node
var x_node = Math.cos(2 * 87 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 87 * Math.PI / N) * 10;
g.nodes.push({
id: 6193,
label: 'TEAM: Genetics of Biofilms',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2018/01/research_pasteur-unite-biofilm-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/genetics-of-biofilms/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 1609986193,
size: 0.5,
source: 160998,
target: 6193 });
// adding node
var x_node = Math.cos(2 * 88 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 88 * Math.PI / N) * 10;
g.nodes.push({
id: 6195,
label: 'TEAM: Yersinia',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/05/research.pasteur.fr_yersinia-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/yersinia/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 1609986195,
size: 0.5,
source: 160998,
target: 6195 });
// adding node
var x_node = Math.cos(2 * 89 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 89 * Math.PI / N) * 10;
g.nodes.push({
id: 6196,
label: 'TEAM: Fungal Biology and Pathogenicity',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/05/research.pasteur.fr_fungal-biology-and-pathogenicity2-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/fungal-biology-and-pathogenicity/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 1609986196,
size: 0.5,
source: 160998,
target: 6196 });
// adding node
var x_node = Math.cos(2 * 90 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 90 * Math.PI / N) * 10;
g.nodes.push({
id: 6201,
label: 'TEAM: Integrative Neurobiology of Cholinergic Systems',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_institutpasteur_14282-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/integrative-neurobiology-of-cholinergic-systems/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 1609986201,
size: 0.5,
source: 160998,
target: 6201 });
// adding node
var x_node = Math.cos(2 * 91 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 91 * Math.PI / N) * 10;
g.nodes.push({
id: 6209,
label: 'TEAM: Molecular Parasitology and Signaling',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/05/research.pasteur.fr_molecular-parasitology-and-signaling3-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/molecular-parasitology-and-signaling/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 1609986209,
size: 0.5,
source: 160998,
target: 6209 });
// adding node
var x_node = Math.cos(2 * 92 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 92 * Math.PI / N) * 10;
g.nodes.push({
id: 6210,
label: 'TEAM: Malaria Parasite Biology and Vaccines',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/05/research.pasteur.fr_malaria-parasite-biology-and-vaccines-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/malaria-parasite-biology-and-vaccines/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 1609986210,
size: 0.5,
source: 160998,
target: 6210 });
// adding node
var x_node = Math.cos(2 * 93 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 93 * Math.PI / N) * 10;
g.nodes.push({
id: 6213,
label: 'TEAM: Oncogenic Virus Epidemiology and Pathophysiology',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/05/research.pasteur.fr_oncogenic-virus-epidemiology-and-pathophysiology-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/oncogenic-virus-epidemiology-and-pathophysiology/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 1609986213,
size: 0.5,
source: 160998,
target: 6213 });
// adding node
var x_node = Math.cos(2 * 94 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 94 * Math.PI / N) * 10;
g.nodes.push({
id: 6202,
label: 'TEAM: Perception & Action',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_chen_stemcells_6-2013-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/perception-and-action/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 1609986202,
size: 0.5,
source: 160998,
target: 6202 });
// adding node
var x_node = Math.cos(2 * 95 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 95 * Math.PI / N) * 10;
g.nodes.push({
id: 6205,
label: 'TEAM: Trypanosome Cell Biology',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/05/research.pasteur.fr_trypanosome-cell-biology-4-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/trypanosome-cell-biology/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 1609986205,
size: 0.5,
source: 160998,
target: 6205 });
// adding node
var x_node = Math.cos(2 * 96 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 96 * Math.PI / N) * 10;
g.nodes.push({
id: 6206,
label: 'TEAM: Biology of Host-parasite Interactions',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_institutpasteur_39695-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/biology-of-host-parasite-interactions/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 1609986206,
size: 0.5,
source: 160998,
target: 6206 });
// adding node
var x_node = Math.cos(2 * 97 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 97 * Math.PI / N) * 10;
g.nodes.push({
id: 6223,
label: 'TEAM: Structural Virology',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/team/structural-virology/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 1609986223,
size: 0.5,
source: 160998,
target: 6223 });
// adding node
var x_node = Math.cos(2 * 98 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 98 * Math.PI / N) * 10;
g.nodes.push({
id: 6224,
label: 'TEAM: Virus and Immunity',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_institutpasteur_40763-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/virus-and-immunity/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 1609986224,
size: 0.5,
source: 160998,
target: 6224 });
// adding node
var x_node = Math.cos(2 * 99 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 99 * Math.PI / N) * 10;
g.nodes.push({
id: 6225,
label: 'TEAM: Viruses and RNA Interference',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_institutpasteur_i02257-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/viruses-and-rna-interference/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 1609986225,
size: 0.5,
source: 160998,
target: 6225 });
// adding node
var x_node = Math.cos(2 * 100 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 100 * Math.PI / N) * 10;
g.nodes.push({
id: 6226,
label: 'TEAM: HIV, Inflammation and Persistence',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/09/research.pasteur.fr_duo-1-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/hiv-inflammation-and-persistence/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 1609986226,
size: 0.5,
source: 160998,
target: 6226 });
// adding node
var x_node = Math.cos(2 * 101 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 101 * Math.PI / N) * 10;
g.nodes.push({
id: 517,
label: 'TEAM: Biological Image Analysis',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2014/12/grid01-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/bioimage-analysis/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 160998517,
size: 0.5,
source: 160998,
target: 517 });
// adding node
var x_node = Math.cos(2 * 102 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 102 * Math.PI / N) * 10;
g.nodes.push({
id: 86,
label: 'TEAM: Signaling and receptors dynamics',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2014/09/research_pasteur-channel-receptors-bandeau-unite-pj-corringer-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/signaling-and-receptors-dynamics/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 16099886,
size: 0.5,
source: 160998,
target: 86 });
var s = new sigma({
//container: document.getElementById('graph-main'),
graph: g,
renderer: {
// IMPORTANT:
// This works only with the canvas renderer, so the
// renderer type set as "canvas" is necessary here.
container: document.getElementById('graph-main'),
type: 'canvas'
},
settings: {
minNodeSize: 6,
maxNodeSize: 30,
mouseWheelEnabled: false,
font: 'Montserrat',
labelThreshold:25,
borderSize:1,
defaultNodeBorderColor: '#333',
sideMargin:25,
}
});
// We first need to save the original colors of our
// nodes and edges, like this:
s.graph.nodes().forEach(function(n) {
n.originalColor = n.color;
//console.log(n.id);
//console.log(s.graph.nodes(n.id));
});
s.graph.edges().forEach(function(e) {
e.originalColor = e.color;
});
// When a node is clicked, we check for each node
// if it is a neighbor of the clicked one. If not,
// we set its color as grey, and else, it takes its
// original color.
// We do the same for the edges, and we only keep
// edges that have both extremities colored.
s.bind('clickNode', function(e) {
var nodeId = e.data.node.id,
toKeep = s.graph.neighbors(nodeId);
toKeep[nodeId] = e.data.node;
s.graph.nodes().forEach(function(n) {
if (toKeep[n.id])
n.color = '#35a9f5';
else
n.color = '#dddddd';
});
s.graph.edges().forEach(function(e) {
if (toKeep[e.source] && toKeep[e.target])
e.color = '#35a9f5';
else
e.color = '#dddddd';
});
// Since the data has been modified, we need to
// call the refresh method to make the colors
// update effective.
s.refresh();
});
// When the stage is clicked, we just color each
// node and edge with its original color.
s.bind('clickStage', function(e) {
s.graph.nodes().forEach(function(n) {
n.color = n.originalColor;
});
s.graph.edges().forEach(function(e) {
e.color = e.originalColor;
});
// Same as in the previous event:
s.refresh();
});
s.bind("doubleClickNode", function (e) {
$("#canvas-wrap, .sigma-scene, .sigma-mouse").val();
ajax_load_page( e.data.node.page_url );
});
var c = s.camera;
s.bind("rightClickStage", function (e) {
sigma.misc.animation.camera(c, {
ratio: c.ratio * c.settings('zoomingRatio')
}, {
duration: 200
});
});
// Configure the noverlap layout:
var noverlapListener = s.configNoverlap({
nodeMargin: 5,
scaleNodes: 0.3,
gridSize: 1,
easing: 'quadraticInOut', // animation transition function
duration: 4000 // animation duration. Long here for the purposes of this example only
});
// Bind the events:
noverlapListener.bind('start stop interpolate', function(e) {
//console.log(e.type);
if(e.type === 'start') {
//console.time('noverlap');
}
if(e.type === 'interpolate') {
//console.timeEnd('noverlap');
}
});
// Start the layout:
s.startNoverlap();
//s.refresh();
// Initialize the dragNodes plugin:
var dragListener = sigma.plugins.dragNodes(s, s.renderers[0]);
dragListener.bind('startdrag', function(event) {
});
dragListener.bind('drag', function(event) {
});
dragListener.bind('drop', function(event) {
});
dragListener.bind('dragend', function(event) {
});