GUIDE
- Left-click and drag the background to move the graph
- Left-click and drag the nodes to reorganize
- Left-click a node to view first level connections
- Double left-click a node to navigate to its page
- Double left-click the background to zoom in
- Right-click the background to zoom out
sigma.utils.pkg('sigma.canvas.nodes');
sigma.canvas.nodes.image = (function() {
var _cache = {},
_loading = {},
_callbacks = {};
// Return the renderer itself:
var renderer = function(node, context, settings) {
var args = arguments,
prefix = settings('prefix') || '',
size = node[prefix + 'size'],
color = node.color || settings('defaultNodeColor'),
url = node.url;
if (_cache[url]) {
context.save();
// Draw the clipping disc:
context.beginPath();
context.arc(
node[prefix + 'x'],
node[prefix + 'y'],
node[prefix + 'size'],
0,
Math.PI * 2,
true
);
context.closePath();
context.clip();
// Draw the image
context.drawImage(
_cache[url],
node[prefix + 'x'] - size,
node[prefix + 'y'] - size,
2 * size,
2 * size
);
// Quit the "clipping mode":
context.restore();
// Draw the border:
context.beginPath();
context.arc(
node[prefix + 'x'],
node[prefix + 'y'],
node[prefix + 'size'],
0,
Math.PI * 2,
true
);
context.lineWidth = 1;
context.strokeStyle = node.color || settings('defaultNodeColor');
context.stroke();
} else {
sigma.canvas.nodes.image.cache(url);
sigma.canvas.nodes.def.apply(
sigma.canvas.nodes,
args
);
}
};
// Let's add a public method to cache images, to make it possible to
// preload images before the initial rendering:
renderer.cache = function(url, callback) {
if (callback)
_callbacks[url] = callback;
if (_loading[url])
return;
var img = new Image();
img.onload = function() {
_loading[url] = false;
_cache[url] = img;
if (_callbacks[url]) {
_callbacks[url].call(this, img);
delete _callbacks[url];
}
};
_loading[url] = true;
img.src = url;
};
return renderer;
})();
var i,
s,
o,
offset_left = 0.5,
N = 1,
E = 40,
C = 5,
d = 0.5,
cs = [],
g = {
nodes: [],
edges: []
};
if (!sigma.classes.graph.hasMethod('neighbors')){
sigma.classes.graph.addMethod('neighbors', function(nodeId) {
var k,
neighbors = {},
index = this.allNeighborsIndex[nodeId] || {};
for (k in index)
neighbors[k] = this.nodesIndex[k];
return neighbors;
});
}
//adding the central node
g.nodes.push({
id: 158419,
label: 'Emerging Infectious Diseases',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2021/05/research_pasteur-enemerging-infectious-diseasesfrmaladies-infectieuses-emergentes-institutpasteur-i038212-150x150.jpg',
x: 0,
y: 0,
size: 30,
color: '#DDDDDD'
});
var x_node = Math.cos(2 * 0 * Math.PI / N) * 2;
var y_node = Math.sin(2 * 0 * Math.PI / N) * 2;
N=3
//check if content already exist
x_site = Math.cos(2 * 0 * Math.PI / N) * 2;
y_site = Math.sin(2 * 0 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 4171,
label: 'Caroline Demangel',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/05/research_pasteur-caroline-demangel-id-caro2-2018-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/caroline-demangel/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 1584194171,
size: 0.5,
source: 158419,
target: 4171 });
//check if content already exist
x_site = Math.cos(2 * 1 * Math.PI / N) * 2;
y_site = Math.sin(2 * 1 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 2624,
label: 'Arnaud Fontanet',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_arnaud-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/arnaud-fontanet/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 1584192624,
size: 0.5,
source: 158419,
target: 2624 });
N=64
// update positions
x_node = Math.cos(2 * 0 * Math.PI / N) * 10;
y_node = Math.sin(2 * 0 * Math.PI / N) * 10;
// adding node
var x_node = Math.cos(2 * 0 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 0 * Math.PI / N) * 10;
g.nodes.push({
id: 130205,
label: 'TEAM: Biomics – Support-Lab',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/03/genetic-strand-9.25.14-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/biomics-support-lab/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 158419130205,
size: 0.5,
source: 158419,
target: 130205 });
// adding node
var x_node = Math.cos(2 * 1 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 1 * Math.PI / N) * 10;
g.nodes.push({
id: 111545,
label: 'TEAM: Collection of the Institut Pasteur (CIP)',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/team/collection-of-the-institut-pasteur-cip/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 158419111545,
size: 0.5,
source: 158419,
target: 111545 });
// adding node
var x_node = Math.cos(2 * 2 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 2 * Math.PI / N) * 10;
g.nodes.push({
id: 109556,
label: 'TEAM: National Collection of Cultures of Microorganisms',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2019/08/research_pasteur-cncm_institutpasteur_27853-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/national-collection-of-cultures-of-microorganisms/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 158419109556,
size: 0.5,
source: 158419,
target: 109556 });
// adding node
var x_node = Math.cos(2 * 3 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 3 * Math.PI / N) * 10;
g.nodes.push({
id: 103216,
label: 'TEAM: Stress Adaptation and Metabolism (SAMe)',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/team/stress-adaptation-metabolism-enterobacteria/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 158419103216,
size: 0.5,
source: 158419,
target: 103216 });
// adding node
var x_node = Math.cos(2 * 4 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 4 * Math.PI / N) * 10;
g.nodes.push({
id: 101904,
label: 'TEAM: Evolutionary genomics of RNA viruses',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/team/evolutionary-genomics-rna-viruses/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 158419101904,
size: 0.5,
source: 158419,
target: 101904 });
// adding node
var x_node = Math.cos(2 * 5 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 5 * Math.PI / N) * 10;
g.nodes.push({
id: 96449,
label: 'TEAM: Molecular Genetics and Epigenetics',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/team/molecular-genetics-and-epigenetics/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 15841996449,
size: 0.5,
source: 158419,
target: 96449 });
// adding node
var x_node = Math.cos(2 * 6 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 6 * Math.PI / N) * 10;
g.nodes.push({
id: 94346,
label: 'TEAM: Biodiversity and Epidemiology of Bacterial Pathogens',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/12/research.pasteur.fr_bordetelle-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/biodiversity-and-epidemiology-of-bacterial-pathogens/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 15841994346,
size: 0.5,
source: 158419,
target: 94346 });
// adding node
var x_node = Math.cos(2 * 7 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 7 * Math.PI / N) * 10;
g.nodes.push({
id: 92464,
label: 'TEAM: Bacterial Toxins',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2018/01/research_pasteur-unite-lemichez1-150x150.png',
page_url: 'https://research.pasteur.fr/en/team/bacterial-toxins/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 15841992464,
size: 0.5,
source: 158419,
target: 92464 });
// adding node
var x_node = Math.cos(2 * 8 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 8 * Math.PI / N) * 10;
g.nodes.push({
id: 90653,
label: 'TEAM: Mouse Genetics',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2017/05/research_pasteur-enmouse-geneticsfrgenetique-de-la-souris-illustration-mouse-genetics-v2-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/mouse-genetics/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 15841990653,
size: 0.5,
source: 158419,
target: 90653 });
// adding node
var x_node = Math.cos(2 * 9 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 9 * Math.PI / N) * 10;
g.nodes.push({
id: 75692,
label: 'TEAM: Ecology and Evolution of Antibiotics Resistance',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/team/ecology-and-evolution-of-antibiotics-resistance/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 15841975692,
size: 0.5,
source: 158419,
target: 75692 });
// adding node
var x_node = Math.cos(2 * 10 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 10 * Math.PI / N) * 10;
g.nodes.push({
id: 64141,
label: 'TEAM: Trypanosome Molecular Biology',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2016/02/research.pasteur.fr_institutpasteur_42122-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/trypanosomes-molecular-biology/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 15841964141,
size: 0.5,
source: 158419,
target: 64141 });
// adding node
var x_node = Math.cos(2 * 11 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 11 * Math.PI / N) * 10;
g.nodes.push({
id: 62866,
label: 'TEAM: Chromatin and Infection',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2016/09/research.pasteur.fr_institutpasteur_50133-150x150.jpeg',
page_url: 'https://research.pasteur.fr/en/team/chromatin-and-infection/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 15841962866,
size: 0.5,
source: 158419,
target: 62866 });
// adding node
var x_node = Math.cos(2 * 12 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 12 * Math.PI / N) * 10;
g.nodes.push({
id: 51157,
label: 'TEAM: Pathogenesis of vascular infections',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/11/research.pasteur.fr_infected-vessel-melican-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/pathogenesis-of-vascular-infections/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 15841951157,
size: 0.5,
source: 158419,
target: 51157 });
// adding node
var x_node = Math.cos(2 * 13 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 13 * Math.PI / N) * 10;
g.nodes.push({
id: 29245,
label: 'TEAM: Collection of Cyanobacteria',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_institutpasteur_16543-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/collection-of-cyanobacteria/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 15841929245,
size: 0.5,
source: 158419,
target: 29245 });
// adding node
var x_node = Math.cos(2 * 14 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 14 * Math.PI / N) * 10;
g.nodes.push({
id: 24312,
label: 'TEAM: RNA Biology of Fungal Pathogens',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/09/research.pasteur.fr_institutpasteur_i00638-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/rna-biology-of-fungal-pathogens/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 15841924312,
size: 0.5,
source: 158419,
target: 24312 });
// adding node
var x_node = Math.cos(2 * 15 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 15 * Math.PI / N) * 10;
g.nodes.push({
id: 24264,
label: 'TEAM: Evolutionary Biology of the Microbial Cell',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/team/evolutionary-biology-of-the-microbial-cell/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 15841924264,
size: 0.5,
source: 158419,
target: 24264 });
// adding node
var x_node = Math.cos(2 * 16 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 16 * Math.PI / N) * 10;
g.nodes.push({
id: 24119,
label: 'TEAM: Malaria Infection & Immunity',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/05/research.pasteur.fr_malaria-biology-and-genetics-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/malaria-infection-immunity/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 15841924119,
size: 0.5,
source: 158419,
target: 24119 });
// adding node
var x_node = Math.cos(2 * 17 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 17 * Math.PI / N) * 10;
g.nodes.push({
id: 6107,
label: 'TEAM: Microbial Individuality and Infection',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2016/09/research.pasteur.fr_m.tuberculosis_metabolicreporter_mergedfluorescenceimage-3-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/microbial-individuality-and-infection/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 1584196107,
size: 0.5,
source: 158419,
target: 6107 });
// adding node
var x_node = Math.cos(2 * 18 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 18 * Math.PI / N) * 10;
g.nodes.push({
id: 6119,
label: 'TEAM: Humoral Immunology',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/05/research_pasteur-enhumoral-immunology-frimmunologie-humorale-bandeau-labo-mouquet-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/humoral-immunology/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 1584196119,
size: 0.5,
source: 158419,
target: 6119 });
// adding node
var x_node = Math.cos(2 * 19 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 19 * Math.PI / N) * 10;
g.nodes.push({
id: 6120,
label: 'TEAM: Synthetic Biology',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_institutpasteur_i03590-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/synthetic-biology/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 1584196120,
size: 0.5,
source: 158419,
target: 6120 });
// adding node
var x_node = Math.cos(2 * 20 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 20 * Math.PI / N) * 10;
g.nodes.push({
id: 6122,
label: 'TEAM: Immunology of Fungal Infections',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_2gj7w5xc-1372179603-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/immunology-of-fungal-infections/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 1584196122,
size: 0.5,
source: 158419,
target: 6122 });
// adding node
var x_node = Math.cos(2 * 21 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 21 * Math.PI / N) * 10;
g.nodes.push({
id: 6126,
label: 'TEAM: Trypanosomatids Infectious Processes',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/05/research.pasteur.fr_trypanosoma-infectious-processes-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/trypanosoma-infectious-processes/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 1584196126,
size: 0.5,
source: 158419,
target: 6126 });
// adding node
var x_node = Math.cos(2 * 22 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 22 * Math.PI / N) * 10;
g.nodes.push({
id: 6127,
label: 'TEAM: Pathogenesis of Bacterial Anaerobes',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2019/09/research_pasteur-labo-dupuy-150x150.png',
page_url: 'https://research.pasteur.fr/en/team/pathogenesis-of-bacterial-anaerobes/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 1584196127,
size: 0.5,
source: 158419,
target: 6127 });
// adding node
var x_node = Math.cos(2 * 23 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 23 * Math.PI / N) * 10;
g.nodes.push({
id: 6117,
label: 'TEAM: Insect-Virus Interactions',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/05/research.pasteur.fr_insect-virus-interactions-150x150.gif',
page_url: 'https://research.pasteur.fr/en/team/insect-virus-interactions/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 1584196117,
size: 0.5,
source: 158419,
target: 6117 });
// adding node
var x_node = Math.cos(2 * 24 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 24 * Math.PI / N) * 10;
g.nodes.push({
id: 6141,
label: 'TEAM: Cellular Biology of Microbial Infection',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/05/research.pasteur.fr_biology-of-cell-interactions-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/cellular-biology-of-microbial-infection/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 1584196141,
size: 0.5,
source: 158419,
target: 6141 });
// adding node
var x_node = Math.cos(2 * 25 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 25 * Math.PI / N) * 10;
g.nodes.push({
id: 6134,
label: 'TEAM: Dynamics of Host-Pathogen Interactions',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/06/research.pasteur.fr_453295a-f1.2-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/dynamics-of-host-pathogen-interactions/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 1584196134,
size: 0.5,
source: 158419,
target: 6134 });
// adding node
var x_node = Math.cos(2 * 26 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 26 * Math.PI / N) * 10;
g.nodes.push({
id: 6152,
label: 'TEAM: Chemistry of Biomolecules',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_institutpasteur_383851-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/chemistry-of-biomolecules/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 1584196152,
size: 0.5,
source: 158419,
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// adding node
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page_url: 'https://research.pasteur.fr/en/team/epidemiology-of-emerging-diseases/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 1584196229,
size: 0.5,
source: 158419,
target: 6229 });
// adding node
var x_node = Math.cos(2 * 60 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 60 * Math.PI / N) * 10;
g.nodes.push({
id: 6232,
label: 'TEAM: Arboviruses and Insect Vectors',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/05/research.pasteur.fr_arboviruses-and-insect-vectors-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/arboviruses-and-insect-vectors/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 1584196232,
size: 0.5,
source: 158419,
target: 6232 });
// adding node
var x_node = Math.cos(2 * 61 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 61 * Math.PI / N) * 10;
g.nodes.push({
id: 1110,
label: 'TEAM: Center for the Production and Infection of Anopheles',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/02/research.pasteur.fr_center-for-production-and-infection-of-anopheles1-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/center-for-production-and-infection-of-anopheles/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 1584191110,
size: 0.5,
source: 158419,
target: 1110 });
// adding node
var x_node = Math.cos(2 * 62 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 62 * Math.PI / N) * 10;
g.nodes.push({
id: 748,
label: 'TEAM: Antibody Engineering',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/02/research.pasteur.fr_antibody-engineering-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/antibody-engineering/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 158419748,
size: 0.5,
source: 158419,
target: 748 });
// adding node
var x_node = Math.cos(2 * 63 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 63 * Math.PI / N) * 10;
g.nodes.push({
id: 345,
label: 'TEAM: Bacteria-Cell Interactions',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2014/11/research.pasteur.fr_bacteria-cell-interactions-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/bacteria-cell-interactions/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 158419345,
size: 0.5,
source: 158419,
target: 345 });
var s = new sigma({
//container: document.getElementById('graph-main'),
graph: g,
renderer: {
// IMPORTANT:
// This works only with the canvas renderer, so the
// renderer type set as "canvas" is necessary here.
container: document.getElementById('graph-main'),
type: 'canvas'
},
settings: {
minNodeSize: 6,
maxNodeSize: 30,
mouseWheelEnabled: false,
font: 'Montserrat',
labelThreshold:25,
borderSize:1,
defaultNodeBorderColor: '#333',
sideMargin:25,
}
});
// We first need to save the original colors of our
// nodes and edges, like this:
s.graph.nodes().forEach(function(n) {
n.originalColor = n.color;
//console.log(n.id);
//console.log(s.graph.nodes(n.id));
});
s.graph.edges().forEach(function(e) {
e.originalColor = e.color;
});
// When a node is clicked, we check for each node
// if it is a neighbor of the clicked one. If not,
// we set its color as grey, and else, it takes its
// original color.
// We do the same for the edges, and we only keep
// edges that have both extremities colored.
s.bind('clickNode', function(e) {
var nodeId = e.data.node.id,
toKeep = s.graph.neighbors(nodeId);
toKeep[nodeId] = e.data.node;
s.graph.nodes().forEach(function(n) {
if (toKeep[n.id])
n.color = '#35a9f5';
else
n.color = '#dddddd';
});
s.graph.edges().forEach(function(e) {
if (toKeep[e.source] && toKeep[e.target])
e.color = '#35a9f5';
else
e.color = '#dddddd';
});
// Since the data has been modified, we need to
// call the refresh method to make the colors
// update effective.
s.refresh();
});
// When the stage is clicked, we just color each
// node and edge with its original color.
s.bind('clickStage', function(e) {
s.graph.nodes().forEach(function(n) {
n.color = n.originalColor;
});
s.graph.edges().forEach(function(e) {
e.color = e.originalColor;
});
// Same as in the previous event:
s.refresh();
});
s.bind("doubleClickNode", function (e) {
$("#canvas-wrap, .sigma-scene, .sigma-mouse").val();
ajax_load_page( e.data.node.page_url );
});
var c = s.camera;
s.bind("rightClickStage", function (e) {
sigma.misc.animation.camera(c, {
ratio: c.ratio * c.settings('zoomingRatio')
}, {
duration: 200
});
});
// Configure the noverlap layout:
var noverlapListener = s.configNoverlap({
nodeMargin: 5,
scaleNodes: 0.3,
gridSize: 1,
easing: 'quadraticInOut', // animation transition function
duration: 4000 // animation duration. Long here for the purposes of this example only
});
// Bind the events:
noverlapListener.bind('start stop interpolate', function(e) {
//console.log(e.type);
if(e.type === 'start') {
//console.time('noverlap');
}
if(e.type === 'interpolate') {
//console.timeEnd('noverlap');
}
});
// Start the layout:
s.startNoverlap();
//s.refresh();
// Initialize the dragNodes plugin:
var dragListener = sigma.plugins.dragNodes(s, s.renderers[0]);
dragListener.bind('startdrag', function(event) {
});
dragListener.bind('drag', function(event) {
});
dragListener.bind('drop', function(event) {
});
dragListener.bind('dragend', function(event) {
});