GUIDE
- Left-click and drag the background to move the graph
- Left-click and drag the nodes to reorganize
- Left-click a node to view first level connections
- Double left-click a node to navigate to its page
- Double left-click the background to zoom in
- Right-click the background to zoom out
sigma.utils.pkg('sigma.canvas.nodes');
sigma.canvas.nodes.image = (function() {
var _cache = {},
_loading = {},
_callbacks = {};
// Return the renderer itself:
var renderer = function(node, context, settings) {
var args = arguments,
prefix = settings('prefix') || '',
size = node[prefix + 'size'],
color = node.color || settings('defaultNodeColor'),
url = node.url;
if (_cache[url]) {
context.save();
// Draw the clipping disc:
context.beginPath();
context.arc(
node[prefix + 'x'],
node[prefix + 'y'],
node[prefix + 'size'],
0,
Math.PI * 2,
true
);
context.closePath();
context.clip();
// Draw the image
context.drawImage(
_cache[url],
node[prefix + 'x'] - size,
node[prefix + 'y'] - size,
2 * size,
2 * size
);
// Quit the "clipping mode":
context.restore();
// Draw the border:
context.beginPath();
context.arc(
node[prefix + 'x'],
node[prefix + 'y'],
node[prefix + 'size'],
0,
Math.PI * 2,
true
);
context.lineWidth = 1;
context.strokeStyle = node.color || settings('defaultNodeColor');
context.stroke();
} else {
sigma.canvas.nodes.image.cache(url);
sigma.canvas.nodes.def.apply(
sigma.canvas.nodes,
args
);
}
};
// Let's add a public method to cache images, to make it possible to
// preload images before the initial rendering:
renderer.cache = function(url, callback) {
if (callback)
_callbacks[url] = callback;
if (_loading[url])
return;
var img = new Image();
img.onload = function() {
_loading[url] = false;
_cache[url] = img;
if (_callbacks[url]) {
_callbacks[url].call(this, img);
delete _callbacks[url];
}
};
_loading[url] = true;
img.src = url;
};
return renderer;
})();
var i,
s,
o,
offset_left = 0.5,
N = 1,
E = 40,
C = 5,
d = 0.5,
cs = [],
g = {
nodes: [],
edges: []
};
if (!sigma.classes.graph.hasMethod('neighbors')){
sigma.classes.graph.addMethod('neighbors', function(nodeId) {
var k,
neighbors = {},
index = this.allNeighborsIndex[nodeId] || {};
for (k in index)
neighbors[k] = this.nodesIndex[k];
return neighbors;
});
}
//adding the central node
g.nodes.push({
id: 14686,
label: 'LabEx IBEID – Integrative Biology of Emerging Infectious Diseases',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_labex-150x150.jpg',
x: 0,
y: 0,
size: 30,
color: '#DDDDDD'
});
var x_node = Math.cos(2 * 0 * Math.PI / N) * 2;
var y_node = Math.sin(2 * 0 * Math.PI / N) * 2;
N=3
//check if content already exist
x_site = Math.cos(2 * 0 * Math.PI / N) * 2;
y_site = Math.sin(2 * 0 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 203306,
label: 'Cyril Renassia',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2023/06/research_pasteur-cyril-renassia-photo-cv-2023-cropped-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/cyril-renassia/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 14686203306,
size: 0.5,
source: 14686,
target: 203306 });
//check if content already exist
x_site = Math.cos(2 * 1 * Math.PI / N) * 2;
y_site = Math.sin(2 * 1 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 3949,
label: 'Philippe Bastin',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/06/research.pasteur.fr_philippe_bastin-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/philippe-bastin/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 146863949,
size: 0.5,
source: 14686,
target: 3949 });
//check if content already exist
x_site = Math.cos(2 * 2 * Math.PI / N) * 2;
y_site = Math.sin(2 * 2 * Math.PI / N) * 2;
// adding site
g.nodes.push({
id: 4775,
label: 'Carla Saleh',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_ha68-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/carla-saleh/',
x: x_site,
y: y_site,
size: 10,
color: '#DDDDDD'
});
//link to content
g.edges.push({
id: 146864775,
size: 0.5,
source: 14686,
target: 4775 });
N=45
// update positions
x_node = Math.cos(2 * 0 * Math.PI / N) * 10;
y_node = Math.sin(2 * 0 * Math.PI / N) * 10;
// adding node
var x_node = Math.cos(2 * 0 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 0 * Math.PI / N) * 10;
g.nodes.push({
id: 103216,
label: 'TEAM: Stress Adaptation and Metabolism (SAMe)',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/team/stress-adaptation-metabolism-enterobacteria/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 14686103216,
size: 0.5,
source: 14686,
target: 103216 });
// adding node
var x_node = Math.cos(2 * 1 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 1 * Math.PI / N) * 10;
g.nodes.push({
id: 101904,
label: 'TEAM: Evolutionary genomics of RNA viruses',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/team/evolutionary-genomics-rna-viruses/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 14686101904,
size: 0.5,
source: 14686,
target: 101904 });
// adding node
var x_node = Math.cos(2 * 2 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 2 * Math.PI / N) * 10;
g.nodes.push({
id: 96449,
label: 'TEAM: Molecular Genetics and Epigenetics',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/team/molecular-genetics-and-epigenetics/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 1468696449,
size: 0.5,
source: 14686,
target: 96449 });
// adding node
var x_node = Math.cos(2 * 3 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 3 * Math.PI / N) * 10;
g.nodes.push({
id: 94346,
label: 'TEAM: Biodiversity and Epidemiology of Bacterial Pathogens',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/12/research.pasteur.fr_bordetelle-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/biodiversity-and-epidemiology-of-bacterial-pathogens/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 1468694346,
size: 0.5,
source: 14686,
target: 94346 });
// adding node
var x_node = Math.cos(2 * 4 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 4 * Math.PI / N) * 10;
g.nodes.push({
id: 94012,
label: 'TEAM: Photonic BioImaging (UTechS PBI)',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2014/09/Neuron-spark-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/photonic-bioimaging-utechs-pbi/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 1468694012,
size: 0.5,
source: 14686,
target: 94012 });
// adding node
var x_node = Math.cos(2 * 5 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 5 * Math.PI / N) * 10;
g.nodes.push({
id: 90653,
label: 'TEAM: Mouse Genetics',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2017/05/research_pasteur-enmouse-geneticsfrgenetique-de-la-souris-illustration-mouse-genetics-v2-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/mouse-genetics/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 1468690653,
size: 0.5,
source: 14686,
target: 90653 });
// adding node
var x_node = Math.cos(2 * 6 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 6 * Math.PI / N) * 10;
g.nodes.push({
id: 86351,
label: 'TEAM: Microbiota of Insect Vectors',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2017/02/research_pasteur-microbiota-of-insect-vectors-g5-m-gendrin-150x150.png',
page_url: 'https://research.pasteur.fr/en/team/microbiota-of-insect-vectors/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 1468686351,
size: 0.5,
source: 14686,
target: 86351 });
// adding node
var x_node = Math.cos(2 * 7 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 7 * Math.PI / N) * 10;
g.nodes.push({
id: 75692,
label: 'TEAM: Ecology and Evolution of Antibiotics Resistance',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/team/ecology-and-evolution-of-antibiotics-resistance/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 1468675692,
size: 0.5,
source: 14686,
target: 75692 });
// adding node
var x_node = Math.cos(2 * 8 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 8 * Math.PI / N) * 10;
g.nodes.push({
id: 64141,
label: 'TEAM: Trypanosome Molecular Biology',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2016/02/research.pasteur.fr_institutpasteur_42122-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/trypanosomes-molecular-biology/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 1468664141,
size: 0.5,
source: 14686,
target: 64141 });
// adding node
var x_node = Math.cos(2 * 9 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 9 * Math.PI / N) * 10;
g.nodes.push({
id: 62866,
label: 'TEAM: Chromatin and Infection',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2016/09/research.pasteur.fr_institutpasteur_50133-150x150.jpeg',
page_url: 'https://research.pasteur.fr/en/team/chromatin-and-infection/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 1468662866,
size: 0.5,
source: 14686,
target: 62866 });
// adding node
var x_node = Math.cos(2 * 10 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 10 * Math.PI / N) * 10;
g.nodes.push({
id: 51157,
label: 'TEAM: Pathogenesis of vascular infections',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/11/research.pasteur.fr_infected-vessel-melican-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/pathogenesis-of-vascular-infections/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 1468651157,
size: 0.5,
source: 14686,
target: 51157 });
// adding node
var x_node = Math.cos(2 * 11 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 11 * Math.PI / N) * 10;
g.nodes.push({
id: 24264,
label: 'TEAM: Evolutionary Biology of the Microbial Cell',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/team/evolutionary-biology-of-the-microbial-cell/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 1468624264,
size: 0.5,
source: 14686,
target: 24264 });
// adding node
var x_node = Math.cos(2 * 12 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 12 * Math.PI / N) * 10;
g.nodes.push({
id: 24119,
label: 'TEAM: Malaria Infection & Immunity',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/05/research.pasteur.fr_malaria-biology-and-genetics-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/malaria-infection-immunity/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 1468624119,
size: 0.5,
source: 14686,
target: 24119 });
// adding node
var x_node = Math.cos(2 * 13 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 13 * Math.PI / N) * 10;
g.nodes.push({
id: 6107,
label: 'TEAM: Microbial Individuality and Infection',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2016/09/research.pasteur.fr_m.tuberculosis_metabolicreporter_mergedfluorescenceimage-3-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/microbial-individuality-and-infection/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 146866107,
size: 0.5,
source: 14686,
target: 6107 });
// adding node
var x_node = Math.cos(2 * 14 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 14 * Math.PI / N) * 10;
g.nodes.push({
id: 6120,
label: 'TEAM: Synthetic Biology',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_institutpasteur_i03590-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/synthetic-biology/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 146866120,
size: 0.5,
source: 14686,
target: 6120 });
// adding node
var x_node = Math.cos(2 * 15 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 15 * Math.PI / N) * 10;
g.nodes.push({
id: 6127,
label: 'TEAM: Pathogenesis of Bacterial Anaerobes',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2019/09/research_pasteur-labo-dupuy-150x150.png',
page_url: 'https://research.pasteur.fr/en/team/pathogenesis-of-bacterial-anaerobes/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 146866127,
size: 0.5,
source: 14686,
target: 6127 });
// adding node
var x_node = Math.cos(2 * 16 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 16 * Math.PI / N) * 10;
g.nodes.push({
id: 6117,
label: 'TEAM: Insect-Virus Interactions',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/05/research.pasteur.fr_insect-virus-interactions-150x150.gif',
page_url: 'https://research.pasteur.fr/en/team/insect-virus-interactions/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 146866117,
size: 0.5,
source: 14686,
target: 6117 });
// adding node
var x_node = Math.cos(2 * 17 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 17 * Math.PI / N) * 10;
g.nodes.push({
id: 6134,
label: 'TEAM: Dynamics of Host-Pathogen Interactions',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/06/research.pasteur.fr_453295a-f1.2-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/dynamics-of-host-pathogen-interactions/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 146866134,
size: 0.5,
source: 14686,
target: 6134 });
// adding node
var x_node = Math.cos(2 * 18 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 18 * Math.PI / N) * 10;
g.nodes.push({
id: 6156,
label: 'TEAM: Mass Spectrometry for Biology',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/05/research_pasteur-enmass-spectrometry-for-biology-frspectrometrie-de-masse-pour-la-biologie-utechs-msbio-dsc1754-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/mass-spectrometry-for-biology/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 146866156,
size: 0.5,
source: 14686,
target: 6156 });
// adding node
var x_node = Math.cos(2 * 19 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 19 * Math.PI / N) * 10;
g.nodes.push({
id: 6157,
label: 'TEAM: Biology Of Intracellular Bacteria',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/05/research.pasteur.fr_biology-of-intracellular-bacteria-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/biology-of-intracellular-bacteria/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 146866157,
size: 0.5,
source: 14686,
target: 6157 });
// adding node
var x_node = Math.cos(2 * 20 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 20 * Math.PI / N) * 10;
g.nodes.push({
id: 6160,
label: 'TEAM: Human Evolutionary Genetics',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/06/research.pasteur.fr_human-genetic-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/human-evolutionary-genetics/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 146866160,
size: 0.5,
source: 14686,
target: 6160 });
// adding node
var x_node = Math.cos(2 * 21 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 21 * Math.PI / N) * 10;
g.nodes.push({
id: 6163,
label: 'TEAM: Integrated Mycobacterial Pathogenomics',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/06/research.pasteur.fr_tuberculosis2-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/integrated-mycobacterial-pathogenomics/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 146866163,
size: 0.5,
source: 14686,
target: 6163 });
// adding node
var x_node = Math.cos(2 * 22 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 22 * Math.PI / N) * 10;
g.nodes.push({
id: 6164,
label: 'TEAM: Bacterial Genome Plasticity',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/09/research.pasteur.fr_mazel-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/bacterial-genome-plasticity/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 146866164,
size: 0.5,
source: 14686,
target: 6164 });
// adding node
var x_node = Math.cos(2 * 23 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 23 * Math.PI / N) * 10;
g.nodes.push({
id: 6166,
label: 'TEAM: Ecology and Emergence of Arthropod-borne Pathogens',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/06/research.pasteur.fr_malaria-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/ecology-and-emergence-of-arthropod-borne-pathogens/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 146866166,
size: 0.5,
source: 14686,
target: 6166 });
// adding node
var x_node = Math.cos(2 * 24 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 24 * Math.PI / N) * 10;
g.nodes.push({
id: 6165,
label: 'TEAM: Microbial Evolutionary Genomics',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/06/research.pasteur.fr_genomics-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/microbial-evolutionary-genomics/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 146866165,
size: 0.5,
source: 14686,
target: 6165 });
// adding node
var x_node = Math.cos(2 * 25 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 25 * Math.PI / N) * 10;
g.nodes.push({
id: 6171,
label: 'TEAM: Microenvironment and Immunity',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_hiv-infected-h9-t-cell-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/microenvironment-and-immunity/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 146866171,
size: 0.5,
source: 14686,
target: 6171 });
// adding node
var x_node = Math.cos(2 * 26 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 26 * Math.PI / N) * 10;
g.nodes.push({
id: 6186,
label: 'TEAM: Mathematical Modelling Of Infectious Diseases',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_mathematical-modeling-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/mathematical-modelling-of-infectious-diseases/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 146866186,
size: 0.5,
source: 14686,
target: 6186 });
// adding node
var x_node = Math.cos(2 * 27 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 27 * Math.PI / N) * 10;
g.nodes.push({
id: 6182,
label: 'TEAM: Epidemiology and Modelling of Antibacterial Evasion (EMAE)',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/05/research.pasteur.fr_pharmacopepidemiology-and-infectious-diseases-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/epidemiology-and-modelling-of-bacterial-escape-to-antimicrobials/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 146866182,
size: 0.5,
source: 14686,
target: 6182 });
// adding node
var x_node = Math.cos(2 * 28 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 28 * Math.PI / N) * 10;
g.nodes.push({
id: 6181,
label: 'TEAM: Biology of infection',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/05/research.pasteur.fr_biology-of-infection1-e1441559125111-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/biology-of-infection/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 146866181,
size: 0.5,
source: 14686,
target: 6181 });
// adding node
var x_node = Math.cos(2 * 29 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 29 * Math.PI / N) * 10;
g.nodes.push({
id: 6190,
label: 'TEAM: Biology and Genetics of Bacterial Cell Wall',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/05/research.pasteur.fr_biology-and-genetics-of-bacterial-cell-wall-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/biology-and-genetics-of-bacterial-cell-wall/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 146866190,
size: 0.5,
source: 14686,
target: 6190 });
// adding node
var x_node = Math.cos(2 * 30 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 30 * Math.PI / N) * 10;
g.nodes.push({
id: 6193,
label: 'TEAM: Genetics of Biofilms',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2018/01/research_pasteur-unite-biofilm-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/genetics-of-biofilms/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 146866193,
size: 0.5,
source: 14686,
target: 6193 });
// adding node
var x_node = Math.cos(2 * 31 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 31 * Math.PI / N) * 10;
g.nodes.push({
id: 6195,
label: 'TEAM: Yersinia',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/05/research.pasteur.fr_yersinia-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/yersinia/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 146866195,
size: 0.5,
source: 14686,
target: 6195 });
// adding node
var x_node = Math.cos(2 * 32 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 32 * Math.PI / N) * 10;
g.nodes.push({
id: 6196,
label: 'TEAM: Fungal Biology and Pathogenicity',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/05/research.pasteur.fr_fungal-biology-and-pathogenicity2-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/fungal-biology-and-pathogenicity/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 146866196,
size: 0.5,
source: 14686,
target: 6196 });
// adding node
var x_node = Math.cos(2 * 33 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 33 * Math.PI / N) * 10;
g.nodes.push({
id: 6209,
label: 'TEAM: Molecular Parasitology and Signaling',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/05/research.pasteur.fr_molecular-parasitology-and-signaling3-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/molecular-parasitology-and-signaling/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 146866209,
size: 0.5,
source: 14686,
target: 6209 });
// adding node
var x_node = Math.cos(2 * 34 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 34 * Math.PI / N) * 10;
g.nodes.push({
id: 6211,
label: 'TEAM: Biology of Viral Emerging Infections',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_institutpasteur_i04690-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/biology-of-viral-emerging-infections/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 146866211,
size: 0.5,
source: 14686,
target: 6211 });
// adding node
var x_node = Math.cos(2 * 35 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 35 * Math.PI / N) * 10;
g.nodes.push({
id: 6213,
label: 'TEAM: Oncogenic Virus Epidemiology and Pathophysiology',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/05/research.pasteur.fr_oncogenic-virus-epidemiology-and-pathophysiology-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/oncogenic-virus-epidemiology-and-pathophysiology/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 146866213,
size: 0.5,
source: 14686,
target: 6213 });
// adding node
var x_node = Math.cos(2 * 36 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 36 * Math.PI / N) * 10;
g.nodes.push({
id: 6223,
label: 'TEAM: Structural Virology',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/team/structural-virology/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 146866223,
size: 0.5,
source: 14686,
target: 6223 });
// adding node
var x_node = Math.cos(2 * 37 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 37 * Math.PI / N) * 10;
g.nodes.push({
id: 6224,
label: 'TEAM: Virus and Immunity',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_institutpasteur_40763-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/virus-and-immunity/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 146866224,
size: 0.5,
source: 14686,
target: 6224 });
// adding node
var x_node = Math.cos(2 * 38 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 38 * Math.PI / N) * 10;
g.nodes.push({
id: 6225,
label: 'TEAM: Viruses and RNA Interference',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_institutpasteur_i02257-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/viruses-and-rna-interference/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 146866225,
size: 0.5,
source: 14686,
target: 6225 });
// adding node
var x_node = Math.cos(2 * 39 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 39 * Math.PI / N) * 10;
g.nodes.push({
id: 6227,
label: 'TEAM: Enteric Bacterial Pathogens',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2019/01/research_pasteur-unite_fx-weill_institutpasteur_13946-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/enteric-bacterial-pathogens/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 146866227,
size: 0.5,
source: 14686,
target: 6227 });
// adding node
var x_node = Math.cos(2 * 40 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 40 * Math.PI / N) * 10;
g.nodes.push({
id: 6228,
label: 'TEAM: Environment and Infectious Risks',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_institutpasteur_i03450-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/environment-and-infectious-risks/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 146866228,
size: 0.5,
source: 14686,
target: 6228 });
// adding node
var x_node = Math.cos(2 * 41 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 41 * Math.PI / N) * 10;
g.nodes.push({
id: 6229,
label: 'TEAM: Epidemiology of Emerging Diseases',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_electron-micrograph-of-ebola-virus-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/epidemiology-of-emerging-diseases/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 146866229,
size: 0.5,
source: 14686,
target: 6229 });
// adding node
var x_node = Math.cos(2 * 42 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 42 * Math.PI / N) * 10;
g.nodes.push({
id: 6232,
label: 'TEAM: Arboviruses and Insect Vectors',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/05/research.pasteur.fr_arboviruses-and-insect-vectors-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/arboviruses-and-insect-vectors/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 146866232,
size: 0.5,
source: 14686,
target: 6232 });
// adding node
var x_node = Math.cos(2 * 43 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 43 * Math.PI / N) * 10;
g.nodes.push({
id: 1072,
label: 'TEAM: Proteomics',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/02/P53-Protein-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/proteomics/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 146861072,
size: 0.5,
source: 14686,
target: 1072 });
// adding node
var x_node = Math.cos(2 * 44 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 44 * Math.PI / N) * 10;
g.nodes.push({
id: 517,
label: 'TEAM: Biological Image Analysis',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2014/12/grid01-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/bioimage-analysis/',
size: 10,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 14686517,
size: 0.5,
source: 14686,
target: 517 });
var s = new sigma({
//container: document.getElementById('graph-main'),
graph: g,
renderer: {
// IMPORTANT:
// This works only with the canvas renderer, so the
// renderer type set as "canvas" is necessary here.
container: document.getElementById('graph-main'),
type: 'canvas'
},
settings: {
minNodeSize: 6,
maxNodeSize: 30,
mouseWheelEnabled: false,
font: 'Montserrat',
labelThreshold:25,
borderSize:1,
defaultNodeBorderColor: '#333',
sideMargin:25,
}
});
// We first need to save the original colors of our
// nodes and edges, like this:
s.graph.nodes().forEach(function(n) {
n.originalColor = n.color;
//console.log(n.id);
//console.log(s.graph.nodes(n.id));
});
s.graph.edges().forEach(function(e) {
e.originalColor = e.color;
});
// When a node is clicked, we check for each node
// if it is a neighbor of the clicked one. If not,
// we set its color as grey, and else, it takes its
// original color.
// We do the same for the edges, and we only keep
// edges that have both extremities colored.
s.bind('clickNode', function(e) {
var nodeId = e.data.node.id,
toKeep = s.graph.neighbors(nodeId);
toKeep[nodeId] = e.data.node;
s.graph.nodes().forEach(function(n) {
if (toKeep[n.id])
n.color = '#35a9f5';
else
n.color = '#dddddd';
});
s.graph.edges().forEach(function(e) {
if (toKeep[e.source] && toKeep[e.target])
e.color = '#35a9f5';
else
e.color = '#dddddd';
});
// Since the data has been modified, we need to
// call the refresh method to make the colors
// update effective.
s.refresh();
});
// When the stage is clicked, we just color each
// node and edge with its original color.
s.bind('clickStage', function(e) {
s.graph.nodes().forEach(function(n) {
n.color = n.originalColor;
});
s.graph.edges().forEach(function(e) {
e.color = e.originalColor;
});
// Same as in the previous event:
s.refresh();
});
s.bind("doubleClickNode", function (e) {
$("#canvas-wrap, .sigma-scene, .sigma-mouse").val();
ajax_load_page( e.data.node.page_url );
});
var c = s.camera;
s.bind("rightClickStage", function (e) {
sigma.misc.animation.camera(c, {
ratio: c.ratio * c.settings('zoomingRatio')
}, {
duration: 200
});
});
// Configure the noverlap layout:
var noverlapListener = s.configNoverlap({
nodeMargin: 5,
scaleNodes: 0.3,
gridSize: 1,
easing: 'quadraticInOut', // animation transition function
duration: 4000 // animation duration. Long here for the purposes of this example only
});
// Bind the events:
noverlapListener.bind('start stop interpolate', function(e) {
//console.log(e.type);
if(e.type === 'start') {
//console.time('noverlap');
}
if(e.type === 'interpolate') {
//console.timeEnd('noverlap');
}
});
// Start the layout:
s.startNoverlap();
//s.refresh();
// Initialize the dragNodes plugin:
var dragListener = sigma.plugins.dragNodes(s, s.renderers[0]);
dragListener.bind('startdrag', function(event) {
});
dragListener.bind('drag', function(event) {
});
dragListener.bind('drop', function(event) {
});
dragListener.bind('dragend', function(event) {
});