publication [25913]

SAMJ: Fast Image Annotation on ImageJ/Fiji via Segment Anything Model

Computer Science

Carlos Garcia-Lopez-de-Haro, Caterina Fuster-Barcelo, Curtis T. Rueden, Jonathan Heras, Vladimir Ulman, Daniel Franco-Barranco, Adrian Ines, Kevin W. Eliceiri, Jean-Christophe Olivo-Marin, Jean-Yves Tinevez, Daniel Sage, Arrate Munoz-Barrutia

Accurate genotyping of three major respiratory bacterial pathogens with ONT R10.4.1 long-read sequencing

Genome Research

Nora Zidane, Carla Rodrigues, Valerie Bouchez, Martin Rethoret-Pasty, Virginie Passet, Sylvain Brisse, Chiara Crestani

F-BIAS: Towards a distributed national core facility for bioimage analysis.

PLoS computational biology

Ambroset M, Marie A, Clément B, Arthur M, Aurélien M, Christian R, Guillaume M, Marine B, Marvin A, Gaëlle L, Antonio T, Volker B, Jérôme M, Fabrice C, Thierry P, Minh-Son P, Stéphane R, Magali F, Perrine PG, Anne-Sophie M, Jean-Yves T

Influenza vaccine effectiveness in Europe and the birth cohort effect against influenza A(H1N1)pdm09: VEBIS primary care multicentre study, 2023/24.

Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin

Kissling E, Maurel M, Pozo F, Pérez-Gimeno G, Buda S, Sève N, Domegan L, Hooiveld M, Oroszi B, Martínez-Baz I, Guiomar R, Latorre-Margalef N, Mlinarić I, Lazar M, Giménez Duran J, Dürrwald R, Enouf V, McKenna A, de Lange M, Túri G, Trobajo-Sanmartín C, Gomez V, Samuelsson Hagey T, Višekruna Vučina V, Cherciu MC, García Vazquez M, Erdwiens A, Masse S, Bennett C, Meijer A, Kristóf K, Castilla J, Rodrigues AP, Kurečić Filipović S, Ivanciuc AE, Bacci S, Kaczmarek M

A Lyme disease mRNA vaccine targeting Borrelia burgdorferi OspA induces strong immune responses and prevents transmission in mice

Molecular Therapy - Nucleic Acids

Djamel Tahir, Virginie Geolier, Hugo Bruant, Anne Le Fleche-Mateos, Adeline Mallet, Marie Varloud, Céline Civat, Yves Girerd-Chambaz, Sandrine Montano, Corinne Pion, Elisabeth Ferquel, Vincent Pavot, Valérie Choumet

Detection of two zoonotic pathogens, Seoul orthohantavirus and pathogenic Leptospira, in rats of Bamako, Mali (2021-2023).

One health (Amsterdam, Netherlands)

Garona J, Berard A, Tatard C, Kwasiborski A, Gauthier P, Ag Atteynine S, Hourdel V, Eusebe A, Diagne C, Caro V, Brouat C, Charbonnel N, Sauvage V, Granjon L, Castel G

Plasmacytoid dendritic cell sensing of hepatitis E virus is shaped by both viral and host factors.

Life science alliance

Joshi G, Décembre E, Brocard J, Montpellier C, Ferrié M, Allatif O, Mehnert AK, Pons J, Galiana D, Dao Thi VL, Jouvenet N, Cocquerel L, Dreux M

Serological evaluation of Crimean-Congo Hemorrhagic fever in humans with High-Risk professional exposure and in residual sera collected in 2022-2023 across Corsica (France).

One health (Amsterdam, Netherlands)

Kiwan P, Gasparine M, Decarreaux D, Capai L, Masse S, Korva M, Avšič-Županc T, Canarelli J, Simeoni MH, de Lamballerie X, Charrel R, Falchi A

Multiplex ACE2-RBD binding inhibition assay: An integrated tool for assessing neutralizing antibodies to SARS-CoV-2 variants and protection against breakthrough infections.

Journal of immunological methods

Bloch E, Garcia L, Donnadieu F, Rosado J, Planas D, Bruel T, Hocqueloux L, Prazuck T, Schwartz O, Tondeur L, Pinaud L, Fontanet A, Pelleau S, White M

Annual (2024) taxonomic update of RNA-directed RNA polymerase-encoding negative-sense RNA viruses (realm Riboviria: kingdom Orthornavirae: phylum Negarnaviricota)

The Journal of General Virology

Kuhn JH, et al.

IEIVariantFilter: a bioinformatics tool to speed up genetic diagnosis of inborn errors of immunity patients.

NAR genomics and bioinformatics

Pereda J, Espinosa R, García-Solís B, Guerra-Galán T, Van-Den-Rym A, Kars ME, Mena R, Galán V, de Andrés-Martín A, Rodríguez-Gallego C, López-Lera A, Corvillo F, Pérez-Martínez A, López-Collazo E, Sánchez-Ramón S, Martínez-Barricarte R, Quintana-Murci L, Lorenzo-Salazar JM, Itan Y, Flores C, Pérez-de-Diego R

Advancing precision ear medicine: leveraging animal models for disease insights and therapeutic innovations.

Mammalian genome : official journal of the International Mammalian Genome Society

Vitry S, Mendia C, Maudoux A, El-Amraoui A

Ancestral [Fe-S] biogenesis system SMS has a unique mechanism of cluster assembly and sulfur utilization

PLoS Biology

Macha Dussouchaud, Markel Martínez-Carranza, Pierre Simon Garcia, Martin Clémancey, Geneviève Blondin, Jean-Michel Betton, Ahmed Haouz, Simonetta Gribaldo, Sandrine Ollagnier de Choudens, Ludovic Sauguet, Ariel E Mechaly, Frédéric Barras

Vestibular modulation by stimulant derivatives in a pentameric ligand-gated ion channel.

British journal of pharmacology

Karlsson E, Andén O, Fan C, Fourati Z, Haouz A, Zhuang Y, Howard RJ, Delarue M, Lindahl E

A MERS-CoV-like mink coronavirus uses ACE2 as an entry receptor.

Nature

Wang N, Ji W, Jiao H, Veit M, Sun J, Wang Y, Ma X, Wang Y, Wang Y, Li XX, Zhang X, Chen J, Wei J, Xu Y, Guo D, Zhai X, Merits A, Li C, Rey FA, Dobrikov GM, Gao GF, Zhang S, Bi Y, Su S

Molecular detection of hrHPV-induced high-grade squamous intraepithelial lesions of the cervix through a targeted RNA next generation sequencing assay

Molecular Medicine

Julia Faillace Thiesen, Elise Jacquemet, Pascal Campagne, Denis Chatelain, Etienne Brochot, Yves-Edouard Herpe, Nolwenn M Dheilly, Fabrice Bouilloux, Bénédicte Rognon, Alexandre Douablin, Guillaume Leboucher, Florent Percher, Marc Eloit, Philippe Pérot