publication [26023]

Democratising deep learning for microscopy with ZeroCostDL4Mic.

Nature communications

von Chamier L, Laine RF, Jukkala J, Spahn C, Krentzel D, Nehme E, Lerche M, Hernández-Pérez S, Mattila PK, Karinou E, Holden S, Solak AC, Krull A, Buchholz TO, Jones ML, Royer LA, Leterrier C, Shechtman Y, Jug F, Heilemann M, Jacquemet G, Henriques R,

Stealth Fluorescence Labeling for Live Microscopy Imaging of mRNA Delivery

Journal of the American Chemical Society

Tom Baladi, Jesper R. Nilsson, Audrey Gallud, Emanuele Celauro, Cécile Gasse, Fabienne Levi-Acobas, Ivo Sarac, Marcel R. Hollenstein, Anders Dahlén, Elin K. Esbjörner*, and L. Marcus Wilhelmsson*

Role of gut microbiota in travel-related acquisition of extended spectrum β-lactamase-producing Enterobacteriaceae.

Journal of travel medicine

Peng Y, Liang S, Poonsuk K, On H, Li SW, Maurin MMP, Chan CH, Chan CL, Sin ZY, Tun HM,

TIM4 expression by dendritic cells mediates uptake of tumor-associated antigens and anti-tumor responses.

Nature communications

Caronni N, Piperno GM, Simoncello F, Romano O, Vodret S, Yanagihashi Y, Dress R, Dutertre CA, Bugatti M, Bourdeley P, Del Prete A, Schioppa T, Mazza EMC, Collavin L, Zacchigna S, Ostuni R, Guermonprez P, Vermi W, Ginhoux F, Bicciato S, Nagata S, Benvenuti F

Phylogenetic analysis of Harmonin homology domains

BMC Bioinformatics

Baptiste Colcombet-Cazenave, Karen Druart, Crystel Bonnet, Christine Petit, Olivier Spérandio, Julien Guglielmini, Nicolas Wolff

Lifestyle-specific S-nitrosylation of protein cysteine thiols regulates Escherichia coli biofilm formation and resistance to oxidative stress.

NPJ biofilms and microbiomes

Barraud N*, Létoffé S*, Beloin C, Vinh J, Chiapetta G#, Ghigo JM# (*equal contribution, #co-corresponding authors)

Lipoprotein DolP supports proper folding of BamA in the bacterial outer membrane, promoting fitness upon envelope stress.

eLife

Ranava D, Yang Y, Orenday-Tapia L, Rousset F, Turlan C, Morales V, Cui L, Moulin C, Froment C, Munoz G, Rech J, Marcoux J, Caumont-Sarcos A, Albenne C, Bikard D, Ieva R,

A Min-Max Based Hyperparameter Estimation For Domain-Adapted Segmentation Of Amoeboid Cells

2021 IEEE 18th International Symposium on Biomedical Imaging (ISBI)

R Sarkar, S Mukherjee, E Labruyère, JC Olivo-Marin

Nu3D: 3D Nuclei Segmentation from Light-Sheet Microscopy Images of the Embryonic Heart

2021 IEEE 18th International Symposium on Biomedical Imaging (ISBI)

Rituparna Sarkar; Daniel Darby; Héloise Foucambert; Sigolène Meilhac; Jean-Christophe Olivo-Marin

EUCAST rapid antimicrobial susceptibility testing (RAST): analytical performance and impact on patient management.

The Journal of antimicrobial chemotherapy

Berinson B, Olearo F, Both A, Brossmann N, Christner M, Aepfelbacher M, Rohde H

Morphological Reconstruction of Detached Dendritic Spines via Geodesic Path Prediction

2021 IEEE 18th International Symposium on Biomedical Imaging (ISBI)

Sammit Jain, Suvadip Mukherjee, Lydia Danglot, Jean-Christophe Olivo-Marin

New methods to decrypt emerging macropinosome functions during the host-pathogen crosstalk.

Cellular microbiology

Chang YY, Enninga J, Stévenin V,

Virus-induced cell gigantism and asymmetric cell division in archaea

Proceedings of the National Academy of Sciences of the United States of America

Liu J, Cvirkaite-Krupovic V, Baquero DP, Yang Y, Zhang Q, Shen Y, Krupovic M

Sustained high expression of multiple APOBEC3 cytidine deaminases in systemic lupus erythematosus.

Scientific reports

Perez-Bercoff D, Laude H, Lemaire M, Hunewald O, Thiers V, Vignuzzi M, Blanc H, Poli A, Amoura Z, Caval V, Suspène R, Hafezi F, Mathian A, Vartanian JP, Wain-Hobson S

Fitness for purpose of stabilized stool samples for bile acid metabolite analyses.

Scientific reports

Neuberger-Castillo L, Ammerlaan W, Betsou F,

The iPPI-DB initiative: a community-centered database of protein–protein interaction modulators

Bioinformatics

Rachel Torchet, Karen Druart, Luis Checa Ruano, Alexandra Moine-Franel, Hélène Borges, Olivia Doppelt-Azeroual, Bryan Brancotte, Fabien Mareuil, Michael Nilges, Hervé Ménager, Olivier Sperandio