• 2015
  Bordería AV, Isakov O, Moratorio G, Henningsson R, Agüera-González S, Organtini L, Gnädig NF, Blanc H, Alcover A, Hafenstein S, Fontes M, Shomron N, Vignuzzi M, Group Selection and Contribution of Minority Variants during Virus Adaptation Determines Virus Fitness and Phenotype, PLoS Pathog. 2015 May;11(5):e1004838.
• 2015
  Isakov O, Bordería AV, Golan D, Hamenahem A, Celniker G, Yoffe L, Blanc H, Vignuzzi M, Shomron N, Deep sequencing analysis of viral infection and evolution allows rapid and detailed characterization of viral mutant spectrum, Bioinformatics 2015 Jul;31(13):2141-50.
• 2014
  Stapleford KA, Coffey LL, Lay S, Bordería AV, Duong V, Isakov O, Rozen-Gagnon K, Arias-Goeta C, Blanc H, Beaucourt S, Haliloğlu T, Schmitt C, Bonne I, Ben-Tal N, Shomron N, Failloux AB, Buchy P, Vignuzzi M, Emergence and transmission of arbovirus evolutionary intermediates with epidemic potential, Cell Host Microbe 2014 Jun;15(6):706-16.
• 2012
  Gnädig NF, Beaucourt S, Campagnola G, Bordería AV, Sanz-Ramos M, Gong P, Blanc H, Peersen OB, Vignuzzi M, Coxsackievirus B3 mutator strains are attenuated in vivo, Proc. Natl. Acad. Sci. U.S.A. 2012 Aug;109(34):E2294-303.
• 2011
  Bordería AV, Stapleford KA, Vignuzzi M, RNA virus population diversity: implications for inter-species transmission, Curr Opin Virol 2011 Dec;1(6):643-8.
• 2011
  Coffey LL, Beeharry Y, Bordería AV, Blanc H, Vignuzzi M, Arbovirus high fidelity variant loses fitness in mosquitoes and mice, Proc. Natl. Acad. Sci. U.S.A. 2011 Sep;108(38):16038-43.
• 2011
  Beaucourt S, Bordería AV, Coffey LL, Gnädig NF, Sanz-Ramos M, Beeharry Y, Vignuzzi M, Isolation of fidelity variants of RNA viruses and characterization of virus mutation frequency, J Vis Exp 2011;(52).
• 2010
  Sanjuán R, Bordería AV, Interplay between RNA structure and protein evolution in HIV-1, Mol. Biol. Evol. 2011 Apr;28(4):1333-8.
• 2010
  Lorenzo-Redondo R, Bordería AV, Lopez-Galindez C, Dynamics of in vitro fitness recovery of HIV-1, J. Virol. 2011 Feb;85(4):1861-70.
• 2010
  Bordería AV, Lorenzo-Redondo R, Pernas M, Casado C, Alvaro T, Domingo E, Lopez-Galindez C, Initial fitness recovery of HIV-1 is associated with quasispecies heterogeneity and can occur without modifications in the consensus sequence, PLoS ONE 2010;5(4):e10319.
• 2009
  Bordería AV, Berkhout B, Towards a genetic AIDS vaccine, Retrovirology 2009;6:93.
• 2008
  Bordería AV, Hartmann BM, Fernandez-Sesma A, Moran TM, Sealfon SC, Antiviral-activated dendritic cells: a paracrine-induced response state, J. Immunol. 2008 Nov;181(10):6872-81.
• 2008
  Carnero E, Li W, Borderia AV, Moltedo B, Moran T, García-Sastre A, Optimization of human immunodeficiency virus gag expression by newcastle disease virus vectors for the induction of potent immune responses, J. Virol. 2009 Jan;83(2):584-97.
• 2007
  Bordería AV, Codoñer FM, Sanjuán R, Selection promotes organ compartmentalization in HIV-1: evidence from gag and pol genes, Evolution 2007 Feb;61(2):272-9.
• 2005
  Yuste E, Bordería AV, Domingo E, López-Galíndez C, Few mutations in the 5′ leader region mediate fitness recovery of debilitated human immunodeficiency type 1 viruses, J. Virol. 2005 May;79(9):5421-7.
• 2004
  Bello G, Casado C, García S, Rodríguez C, del Romero J, Borderia AV, López-Galíndez C, Plasma RNA viral load is not associated with intrapatient quasispecies heterogeneity in HIV-1 infection, Arch. Virol. 2004 Sep;149(9):1761-71.
• 2002
  Bordería AV, Elena SF, r- and K-selection in experimental populations of vesicular stomatitis virus, Infect. Genet. Evol. 2002 Dec;2(2):137-43.
• 2001
  Elena SF, Sanjuán R, Bordería AV, Turner PE, Transmission bottlenecks and the evolution of fitness in rapidly evolving RNA viruses, Infect. Genet. Evol. 2001 Jul;1(1):41-8.