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2021Drug resistance mutations in HIV: new bioinformatics approaches and challenges., Curr Opin Virol 2021 Sep; 51(): 56-64.
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2021Cuban history of CRF19 recombinant subtype of HIV-1., PLoS Pathog 2021 Aug; 17(8): e1009786.
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2021Using machine learning and big data to explore the drug resistance landscape in HIV., PLoS Comput Biol 2021 Aug; 17(8): e1008873.
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2020Origin, evolution and global spread of SARS-CoV-2, Comptes Rendus Biologies 2020; 20 p.
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2020The seventh pandemic of cholera in Europe revisited by microbial genomics., Nat Commun 2020 10; 11(1): 5347.
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2019Distribution and asymptotic behavior of the phylogenetic transfer distance., J Math Biol 2019 07; 79(2): 485-508.
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2019Incorporating alignment uncertainty into Felsenstein’s phylogenetic bootstrap to improve its reliability, Bioinformatics 2019 Feb;.
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2018Renewing Felsenstein’s phylogenetic bootstrap in the era of big data, Nature 2018 Apr;.
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2018Generalized Bootstrap Supports for Phylogenetic Analyses of Protein Sequences Incorporating Alignment Uncertainty, Systematic Biology. 2018: syx096.
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2016In-depth analysis of HIV-1 drug resistance mutations in HIV-infected individuals failing first-line regimens in West and Central Africa, AIDS 2016 11;30(17):2577-2589.
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2015A phylotype-based analysis highlights the role of drug-naive HIV-positive individuals in the transmission of antiretroviral resistance in the UK, Aids 29 (15), 1917-1925.
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2014Identification of Divergent Protein Domains by Combining HMM-HMM Comparisons and Co-Occurrence Detection, PLoS One. 2014 Jun 5;9(6):e95275.
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2014Predicting the ancestral character changes in a tree is typically easier than predicting the root state, Syst Biol. 2014 May;63(3):421-35.
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2014Deep conservation of human protein tandem repeats within the eukaryotes, Mol Biol Evol. 2014 May;31(5):1132-48.