• 2025
  Mohamed M. Benimam, Vannary Meas-Yedid, Suvadip Mukherjee, Astri Frafjord, Alexandre Corthay, Thibault Lagache & Jean-Christophe Olivo-Marin , Statistical analysis of spatial patterns in tumor microenvironment images, Nature Communications volume 16, Article number: 3090 (2025) .
• 2022
  S. Mukherjee, R. Sarkar, M. Manich, E. Labruyère and J. -C. Olivo-Marin, Domain Adapted Multi-task Learning For Segmenting Amoeboid Cells in Microscopy, IEEE Transactions on Medical Imaging, 2022.
• 2022
  Suvadip Mukherjee, Vannary Meas-Yedid, Marc Bokobza, Thibault Lagache, Alexandre Corthay, Jean-Christophe Olivo-Marin, Spatial Analysis For Histopathology: A Statistical Approach, 2022 IEEE 19th International Symposium on Biomedical Imaging (ISBI), Mar 2022, Kolkata, India. pp.1-5, ⟨10.1109/ISBI52829.2022.9761498⟩.
• 2021
  Samuel Kubler, Suvadip Mukherjee, Jean-Christophe Olivo-Marin, Thibault Lagache, A Robust and Versatile Framework to Compare Spike Detection Methods in Calcium Imaging of Neuronal Activity, 2021 IEEE 18th International Symposium on Biomedical Imaging (ISBI), Apr 2021, Nice, France. pp.375-379, ⟨10.1109/ISBI48211.2021.9433951⟩.
• 2021
  R Sarkar, S Mukherjee, E Labruyère, JC Olivo-Marin, A Min-Max Based Hyperparameter Estimation For Domain-Adapted Segmentation Of Amoeboid Cells, 2021 IEEE 18th International Symposium on Biomedical Imaging (ISBI).
• 2021
  Sammit Jain, Suvadip Mukherjee, Lydia Danglot, Jean-Christophe Olivo-Marin, Morphological Reconstruction of Detached Dendritic Spines via Geodesic Path Prediction, 2021 IEEE 18th International Symposium on Biomedical Imaging (ISBI).
• 2020
  Suvadip Mukherjee; Thibault Lagache; Jean-Christophe Olivo-Marin , Evaluating the Stability of Spatial Keypoints via Cluster Core Correspondence Index, IEEE Transactions on Image Processing, vol. 30, pp. 386-401, 2021.
• 2020
  Suvadip Mukherjee, Catalina Gonzalez-Gomez, Lydia Danglot, Thibault Lagache, Jean-Christophe Olivo-Marin, Generalizing the Statistical Analysis of Objects’ Spatial Coupling in Bioimaging, IEEE Signal Processing Letters, 2020, 27, pp.1085-1089. ⟨10.1109/LSP.2020.3003821⟩.
• 2020
  R Sarkar, S Mukherjee, E Labruyère, JC Olivo-Marin, Learning to segment clustered amoeboid cells from brightfield microscopy via multi-task learning with adaptive weight selection, 2020 25th International Conference on Pattern Recognition (ICPR).