• 2024
  Tesson F, Huiting E, Wei L, Ren J, Johnson M, Planel R, Cury J, Feng Y, Bondy-Denomy J, Bernheim A, Exploring the diversity of anti-defense systems across prokaryotes, phages and mobile genetic elements., Nucleic Acids Res 2024 Dec; (): .
• 2024
  Juliette Bonche, Bryan Brancotte, Elodie Chapeaublanc, Amanda Dieuaide, Simon Malesys, Fabien Mareuil, Rémi Planel, Marie Schmit, Raphael Tackx, Rachel Torchet, Web development, expertise of the Web INTEgRation group in the Bioinformatic and Biostatistics Hub, Journée Départementale du Département de Biologie Computationnelle de l'Institut Pasteur, Mar 2024, Annecy (France), France.
• 2020
  Calvo-Villamañán A, Ng JW, Planel R, Ménager H, Chen A, Cui L, Bikard D, On-target activity predictions enable improved CRISPR-dCas9 screens in bacteria, Nucleic Acids Res. 2020 Apr;.
• 2020
  Gautreau G, Bazin A, Gachet M, Planel R, Burlot L, Dubois M, Perrin A, Médigue C, Calteau A, Cruveiller S, Matias C, Ambroise C, Rocha EPC, Vallenet D, PPanGGOLiN: Depicting microbial diversity via a partitioned pangenome graph, PLoS Comput. Biol. 2020 Mar;16(3):e1007732.
• 2019
  Vallenet D, Calteau A, Dubois M, Amours P, Bazin A, Beuvin M, Burlot L, Bussell X, Fouteau S, Gautreau G, Lajus A, Langlois J, Planel R, Roche D, Rollin J, Rouy Z, Sabatet V, Médigue C, MicroScope: an integrated platform for the annotation and exploration of microbial gene functions through genomic, pangenomic and metabolic comparative analysis, Nucleic Acids Res. 2019 Oct;.
• 2018
  Duchemin W, Gence G, Arigon Chifolleau AM, Arvestad L, Bansal MS, Berry V, Boussau B, Chevenet F, Comte N, Davín AA, Dessimoz C, Dylus D, Hasic D, Mallo D, Planel R, Posada D, Scornavacca C, Szöllosi G, Zhang L, Tannier É, Daubin V, RecPhyloXML: a format for reconciled gene trees, Bioinformatics 2018 11;34(21):3646-3652.
• 2017
  Lassalle F, Planel R, Penel S, Chapulliot D, Barbe V, Dubost A, Calteau A, Vallenet D, Mornico D, Bigot T, Guéguen L, Vial L, Muller D, Daubin V, Nesme X, Ancestral Genome Estimation Reveals the History of Ecological Diversification in Agrobacterium, Genome Biol Evol 2017 12;9(12):3413-3431.
• 2017
  Médigue C, Calteau A, Cruveiller S, Gachet M, Gautreau G, Josso A, Lajus A, Langlois J, Pereira H, Planel R, Roche D, Rollin J, Rouy Z, Vallenet D, MicroScope-an integrated resource for community expertise of gene functions and comparative analysis of microbial genomic and metabolic data, Brief. Bioinformatics 2017 Sep;.
• 2016
  Francois CM, Duret L, Simon L, Mermillod-Blondin F, Malard F, Konecny-Dupré L, Planel R, Penel S, Douady CJ, Lefébure T, No Evidence That Nitrogen Limitation Influences the Elemental Composition of Isopod Transcriptomes and Proteomes, Mol. Biol. Evol. 2016 10;33(10):2605-20.
• 2014
  Ramulu HG, Groussin M, Talla E, Planel R, Daubin V, Brochier-Armanet C, Ribosomal proteins: toward a next generation standard for prokaryotic systematics?, Mol. Phylogenet. Evol. 2014 Jun;75:103-17.
• 2012
  Py B, Gerez C, Angelini S, Planel R, Vinella D, Loiseau L, Talla E, Brochier-Armanet C, Garcia Serres R, Latour JM, Ollagnier-de Choudens S, Fontecave M, Barras F, Molecular organization, biochemical function, cellular role and evolution of NfuA, an atypical Fe-S carrier, Mol. Microbiol. 2012 Oct;86(1):155-71.