publication [25822]

Facilitating accessible, rapid, and appropriate processing of ancient metagenomic data with AMDirT

F1000Research

Maxime Borry, Adrian Forsythe, Aida Andrades Valtueña, Alexander Hübner, Anan Ibrahim, Andrea Quagliariello, Anna E White, Arthur Kocher, Bjørn Peare Bartholdy, Diāna Spurīte, Gabriel Yaxal Ponce-Soto, Gunnar Neumann, I-Ting Huang, Ian Light, Irina M Velsko, Iseult Jackson, Jasmin Frangenberg, Javier G Serrano, Julien Fumey, Kadir T Özdoğan, Kelly E Blevins, Kevin G Daly, Maria Lopopolo, Markella Moraitou, Megan Michel, Meriam van Os, Miriam J Bravo-Lopez, Mohamed S Sarhan, Nihan D Dagtas, Nikolay Oskolkov, Olivia S Smith, Ophélie Lebrasseur, Piotr Rozwalak, Raphael Eisenhofer, Sally Wasef, Shreya L Ramachandran, Valentina Vanghi, Christina Warinner, James A Fellows Yates

One Health compartment analysis of ESBL-producing Escherichia coli reveals multiple transmission events in a rural area of Madagascar.

The Journal of antimicrobial chemotherapy

Gay N, Rabenandrasana MAN, Panandiniaina HP, Rakotoninidrina MF, Ramahatafandry IT, Enouf V, Roger F, Collard JM, Cardinale E, Rieux A, Loire E

Factors Associated with Carriage of Enteropathogenic and Non-Enteropathogenic Viruses: A Reanalysis of Matched Case-Control Data from the AFRIBIOTA Site in Antananarivo, Madagascar.

Pathogens (Basel, Switzerland)

Razanajatovo IM, Andrianomiadana L, Habib A, Randrianarisoa MM, Razafimanjato H, Rakotondrainipiana M, Andriantsalama P, Randriamparany R, Andriamandimby SF, Vonaesch P, Sansonetti PJ, Lacoste V, Randremanana RV, Collard JM, Heraud JM, On Behalf Of The Afribiota Investigators

In vivo emergence of a still uncommon resistance to fidaxomicin in the urgent antimicrobial resistance threat Clostridioides difficile.

The Journal of antimicrobial chemotherapy

Marchandin H, Anjou C, Poulen G, Freeman J, Wilcox M, Jean-Pierre H, Barbut F

Traceability, virulence and antimicrobial resistance of Yersinia enterocolitica in two industrial cheese-making plants.

International journal of food microbiology

Piras F, Siddi G, Le Guern AS, Brémont S, Fredriksson-Ahomaa M, Sanna R, Meloni MP, De Santis EPL, Scarano C

Raynals, an online tool for the analysis of dynamic

Acta Crystallogr D Struct Biol.

Osvaldo Burastero, George Draper-Barr, Bertrand Raynal, Maelenn Chevreuil, Patrick England, Maria Garcia Alai

Corrigendum: Chryseobacterium oryctis sp. nov., isolated from the gut of the beetle Oryctes rhinoceros, and Chryseobacterium kimseyorum sp. nov., isolated from a stick insect rearing cage.

International journal of systematic and evolutionary microbiology

Han CJ, Chen WM, Chen HK, Liaw SJ, Mühle E, Clermont D, Shelomi M

Invasive fungal diseases in patients with autoimmune diseases: a case series from the French RESSIF network.

RMD open

Galmiche S, Thoreau B, Bretagne S, Alanio A, Paugam A, Letscher-Bru V, Cassaing S, Gangneux JP, Guegan H, Favennec L, Minoza A, Morio F, Bonhomme J, Desoubeaux G, Eloy O, Hasseine L, Sasso M, Millon L, Bellanger AP, Poirier P, Moniot M, Chouaki T, Huguenin A, Dalle F, Bouteille B, Nicolas M, Desbois-Nogard N, Bougnoux ME, Danion F, Poindron V, Néel A, Boukris-Sitbon K, Lanternier F, Terrier B

Heterogeneity and functions of the 13 IFN-α subtypes – lucky for some?

European journal of immunology

Moreau TRJ, Bondet V, Rodero MP, Duffy D

Integrated analysis of whole blood oxylipin and cytokine responses after bacterial, viral, and T cell stimulation reveals new immune networks.

iScience

Villain E, Chanson A, Mainka M, Kampschulte N, Le Faouder P, Bertrand-Michel J, Brandolini-Bulon M, Charbit B, Musvosvi M, Bilek N, Scriba TJ, Quintana-Murci L, Schebb NH, Duffy D, Gladine C

Bacteriophages targeting protective commensals impair resistance against Salmonella Typhimurium infection in gnotobiotic mice.

PLoS pathogens

von Strempel A, Weiss AS, Wittmann J, Salvado Silva M, Ring D, Wortmann E, Clavel T, Debarbieux L, Kleigrewe K, Stecher B

Examination of eye movements during visual scanning of real-world images in Alzheimer’s disease and amnestic mild cognitive impairment.

International journal of psychophysiology : official journal of the International Organization of Psychophysiology

Eraslan Boz H, Koçoğlu K, Akkoyun M, Tüfekci IY, Ekin M, Özçelik P, Akdal G

Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae.

Nature genetics

O'Donnell S, Yue JX, Saada OA, Agier N, Caradec C, Cokelaer T, De Chiara M, Delmas S, Dutreux F, Fournier T, Friedrich A, Kornobis E, Li J, Miao Z, Tattini L, Schacherer J, Liti G, Fischer G

Enjeux et difficultés de l’accès aux traitements pour la prise en charge de l’hépatite B chronique à Madagascar : étude qualitative auprès des soignants et personnes atteintes.

Revue d’épidémiologie et de santé publique

Mattern C. Pourette D, Andriamandimby SF, Rabarison J, Darsot A, Ralaizara B, Vray M, Shimakawa Y, Giles-Vernick T.

Democratizing knowledge representation with BioCypher.

Nature biotechnology

Lobentanzer S, Aloy P, Baumbach J, Bohar B, Carey VJ, Charoentong P, Danhauser K, Doğan T, Dreo J, Dunham I, Farr E, Fernandez-Torras A, Gyori BM, Hartung M, Hoyt CT, Klein C, Korcsmaros T, Maier A, Mann M, Ochoa D, Pareja-Lorente E, Popp F, Preusse M, Probul N, Schwikowski B, Sen B, Strauss MT, Turei D, Ulusoy E, Waltemath D, Wodke JAH, Saez-Rodriguez J

Seroprevalence of porcine cysticercosis in traditional farms in South-Eastern Côte d’Ivoire.

Parasite epidemiology and control

Koffi KE, Soumahoro MK, N'Dri KB, Nowakowski M, Guédé CM, Boka OM, Melki J, Touré OA, Djaman J, Bellalou J, N'Goran KE, Jambou R