publication [25765]

CellWalker: a user-friendly and modular computational pipeline for morphological analysis of microscopy images.

Bioinformatics (Oxford, England)

Khare H, Dongo Mendoza N, Zurzolo C

Outsciencing the scientists: a cross-sectional mixed-methods investigation of public trust in scientists in seven European countries

BMJ Public Health

Leonardo W Heyerdahl, Yanina Borzykh, Benedetta Lana, Anna-Maria Volkmann, Lars Crusefalk, Elien Colman, Nastassia Tvardik, Sibyl Anthierens, Muriel Vray, Tamara Giles-Vernick

Breast cancer remotely imposes a myeloid bias on haematopoietic stem cells by reprogramming the bone marrow niche.

Nature cell biology

Gerber-Ferder Y, Cosgrove J, Duperray-Susini A, Missolo-Koussou Y, Dubois M, Stepaniuk K, Pereira-Abrantes M, Sedlik C, Lameiras S, Baulande S, Bendriss-Vermare N, Guermonprez P, Passaro D, Perié L, Piaggio E, Helft J

Parvimonas micra, an oral pathobiont associated with colorectal cancer, epigenetically reprograms human colonocytes.

Gut microbes

Bergsten E, Mestivier D, Donnadieu F, Pedron T, Barau C, Meda LT, Mettouchi A, Lemichez E, Gorgette O, Chamaillard M, Vaysse A, Volant S, Doukani A, Sansonetti PJ, Sobhani I, Nigro G

Intensified screening for SARS-CoV-2 in 18 emergency departments in the Paris metropolitan area, France (DEPIST-COVID): A cluster-randomized, two-period, crossover trial.

PLoS medicine

Leblanc J, Dusserre-Telmon L, Chauvin A, Simon T, Sabbatini CE, Hemming K, Colizza V, Bérard L, Convert J, Lazazga S, Jegou C, Taibi N, Dautheville S, Zaghia D, Gerlier C, Domergue M, Larrouturou F, Bonnet F, Fontanet A, Salhi S, LeGoff J, Crémieux AC

Genomic analysis of Shigella isolates from Lebanon reveals marked genetic diversity and antimicrobial resistance.

Microbial genomics

Yassine I, Rafei R, Pardos de la Gandara M, Osman M, Fabre L, Dabboussi F, Hamze M, Weill FX

Targeting structural flexibility in low density lipoprotein by integrating cryo-electron microscopy and high-speed atomic force microscopy.

International journal of biological macromolecules

Cisse A, Desfosses A, Stainer S, Kandiah E, Traore DAK, Bezault A, Schachner-Nedherer AL, Leitinger G, Hoerl G, Hinterdorfer P, Gutsche I, Prassl R, Peters J, Kornmueller K

Core genome sequencing and genotyping of Leptospira interrogans in clinical samples by target capture sequencing

BMC Infectious Diseases

Linda Grillova, Thomas Cokelaer, Jean-François Mariet, Juliana Pipoli da Fonseca, Mathieu Picardeau

Activation of Nod2 signaling upon norovirus infection enhances antiviral immunity and susceptibility to colitis.

Gut microbes

Muharram G, Thépaut M, Lobert PE, Grandjean T, Boulard O, Delacre M, Wakeford E, Wheeler R, Poulin LF, Boneca IG, Lafont F, Michallet MC, Hober D, Cadwell K, Chamaillard M

Assessing the utility of COVID-19 case reports as a leading indicator for hospitalization forecasting in the United States.

Epidemics

Reich NG, Wang Y, Burns M, Ergas R, Cramer EY, Ray EL

Comparing methods for constructing and representing human pangenome graphs

Genome Biology

Francesco Andreace, Pierre Lechat, Yoann Dufresne, Rayan Chikhi

Transcriptome profiling of human col\onic cells exposed to the gut pathobiont Streptococcus gallolyticus subsp. gallolyticus.

PloS one

Pasquereau-Kotula E, du Merle L, Sismeiro O, Pietrosemoli N, Varet H, Legendre R, Trieu-Cuot P, Dramsi S

Kicking sleepers out of bed: Macrophages promote reactivation of dormant Cryptococcus neoformans by extracellular vesicle release and non-lytic exocytosis.

PLoS pathogens

de Castro RJA, Marina CL, Sturny-Leclère A, Hoffmann C, Bürgel PH, Wong SSW, Aimanianda V, Varet H, Agrawal R, Bocca AL, Alanio A

ISBER Best Practices: Recommendations for Repositories

Snapes E (Editor-in-chief). Hurtado-Ortiz R, et al (contributors). Betsou F, et al (reviewers).

Assessing the histidine-rich protein 2/3 gene deletion in Plasmodium falciparum isolates from Burkina Faso.

Malaria journal

Tarama CW, Soré H, Siribié M, Débé S, Kinda R, Nonkani WG, Tiendrebeogo F, Bantango W, Yira K, Hien EY, Guelbéogo MW, Traoré Y, Ménard D, Gansané A

CD115+ monocytes protect microbially experienced mice against E. coli-induced sepsis

Cell Reports

Martin MD, Skon-Hegg C, Kim CY, Xu J, Kucaba TA, Swanson W, Pierson MJ, Williams JW, Badovinac VP, Shen SS, Ingersoll MA, Griffith TS