• 2023
  Fox ZR, Batt G, Ruess J, Bayesian filtering for model predictive control of stochastic gene expression in single cells, Phys Biol 2023 Jul 12; 20(5):055003 .
• 2023
  Lunz D, Bonnans JF, Ruess J, Optimal control of bioproduction in the presence of population heterogeneity, J Math Biol 2023 Feb 02; 86(3):43.
• 2022
  Fox Z, Fletcher S, Fraisse A, Aditya C, Sosa-Carrillo S, Petit J, Gilles S, Bertaux F, Ruess J, Batt B, Enabling reactive microscopy with MicroMator, Nat Commun. 2022 Apr22;13(1): 2199.
• 2022
  Aditya C, Bertaux F, Batt G, Ruess J, Using single-cell models to predict the functionality of synthetic circuits at the population scale, PNAS 2022; 119(11):e2114438119.
• 2022
  Davidović A, Chait R, Batt G, Ruess J, Parameter inference for stochastic biochemical models from perturbation experiments parallelised at the single cell level, PLoS Comput Biol 2022 Mar; 18(3): e1009950.
• 2021
  Bertaux F, Ruess J, Batt G, External control of microbial populations for bioproduction: A modeling and optimization viewpoint, Current Opinion in Systems Biology. 2021 Dec 1;28:100394.
• 2021
  Aditya C, Bertaux F, Batt G, Ruess J, A light tunable differentiation system for the creation and control of consortia in yeast, Nat Commun. 2021 Oct 5;12(1):5829.
• 2021
  Lunz D, Batt G, Ruess J, Bonnans JF, Beyond the chemical master equation: Stochastic chemical kinetics coupled with auxiliary processes, PLoS Comput Biol 2021 Jul 28; 17(7): e1009214.
• 2020
  Lunz D, Batt G, Ruess J, To quarantine, or not to quarantine: A theoretical framework for disease control via contact tracing, Epidemics, 2020, 34.
• 2019
  Cepeda-Humerez SA, Ruess J, Tkačik G, Estimating information in time-varying signals, PLoS Comput. Biol. 2019 09;15(9):e1007290.
• 2019
  Ruess J, Pleška M, Guet CC, Tkačik G, Molecular noise of innate immunity shapes bacteria-phage ecologies, PLoS Comput. Biol. 2019 07;15(7):e1007168.
• 2019
  Kryukov M, Carcano A, Batt G, Ruess J, Can optimal experimental design serve as a tool to characterize highly non-linear synthetic circuits?, ECC 2019, pp. 1176-1181.
• 2019
  Weill E, Andréani V, Aditya C, Martinon P, Ruess J, Batt G, Bonnans JF, Optimal control of an artificial microbial differentiation system for protein bioproduction, ECC 2019, pp. 2663-2668.
• 2017
  Chait R, Ruess J, Bergmiller T, Tkačik G, Guet CC, Shaping bacterial population behavior through computer-interfaced control of individual cells, Nat Commun. 2017 Nov 16;8(1):1535.