• 2025
  Angelica Frusteri Chiacchiera, Michela Casanova, Massimo Bellato, Aurora Piazza, Roberta Migliavacca, Grégory Batt, Paolo Magni, Lorenzo Pasotti, Harnessing CRISPR interference to resensitize laboratory strains and clinical isolates to last resort antibiotics, Scientific Reports, 2025, 15, pp.261. .
• 2024
  Davide de Marchi, Roman Shaposhnikov, Samy Gobaa, Daniele Pastorelli, Gregory Batt, Paolo Magni, Lorenzo Pasotti, Design and model-driven analysis of synthetic circuits with the Staphylococcus aureus dead-Cas9 (sadCas9) as a programmable transcriptional regulator in bacteria, ACS Synthetic Biology, 2024, 13 (3), pp.763-780. .
• 2023
  Fox ZR, Batt G, Ruess J, Bayesian filtering for model predictive control of stochastic gene expression in single cells, Phys Biol 2023 Jul 12; 20(5):055003 .
• 2023
  Sosa-Carrillo S, Galez H, Napolitano S, Bertaux F, Batt G, Maximizing protein production by keeping cells at optimal secretory stress levels using real-time control approaches, Nat Commun. 2023 May 25;14(1):3028.
• 2022
  Bertaux F, Sosa-Carrillo S, Gross V, Fraisse A, Aditya C, Furstenheim M, Batt G, Enhancing bioreactor arrays for automated measurements and reactive control with ReacSight, Nat Commun 2022 Jun; 13(1): 3363.
• 2022
  Fox Z, Fletcher S, Fraisse A, Aditya C, Sosa-Carrillo S, Petit J, Gilles S, Bertaux F, Ruess J, Batt B, Enabling reactive microscopy with MicroMator, Nat Commun. 2022 Apr22;13(1): 2199.
• 2022
  Aditya C, Bertaux F, Batt G, Ruess J, Using single-cell models to predict the functionality of synthetic circuits at the population scale, PNAS 2022; 119(11):e2114438119.
• 2022
  Davidović A, Chait R, Batt G, Ruess J, Parameter inference for stochastic biochemical models from perturbation experiments parallelised at the single cell level, PLoS Comput Biol 2022 Mar; 18(3): e1009950.
• 2021
  Bertaux F, Ruess J, Batt G, External control of microbial populations for bioproduction: A modeling and optimization viewpoint, Current Opinion in Systems Biology. 2021 Dec 1;28:100394.
• 2021
  Aditya C, Bertaux F, Batt G, Ruess J, A light tunable differentiation system for the creation and control of consortia in yeast, Nat Commun. 2021 Oct 5;12(1):5829.
• 2021
  Andreani V, You L, Glaser P, Batt G, A model-based approach to characterize enzyme-mediated response to antibiotic treatments: going beyond the SIR classification, bioRxiv. 2021.07.16.452741.
• 2021
  Lunz D, Batt G, Ruess J, Bonnans JF, Beyond the chemical master equation: Stochastic chemical kinetics coupled with auxiliary processes, PLoS Comput Biol 2021 Jul 28; 17(7): e1009214.
• 2020
  Lunz D, Batt G, Ruess J, To quarantine, or not to quarantine: A theoretical framework for disease control via contact tracing, Epidemics, 2020, 34.
• 2019
  Kryukov M, Carcano A, Batt G, Ruess J, Can optimal experimental design serve as a tool to characterize highly non-linear synthetic circuits?, ECC 2019, pp. 1176-1181.
• 2019
  Weill E, Andréani V, Aditya C, Martinon P, Ruess J, Batt G, Bonnans JF, Optimal control of an artificial microbial differentiation system for protein bioproduction, ECC 2019, pp. 2663-2668.
• 2018
  Meredith HR, Andreani V, Ma HR, Lopatkin AJ, Lee AJ, Anderson DJ, Batt G, You L, Applying ecological resistance and resilience to dissect bacterial antibiotic responses, Sci Adv 2018 Dec; 4(12): eaau1873.
• 2018
  Lugagne JB, Jain S, Ivanovitch P, Ben Meriem Z, Vulin C, Fracassi C, Batt G, Hersen P, Identification of individual cells from z-stacks of bright-field microscopy images, Sci Rep 2018 Jul; 8(1): 11455.
• 2017
  Lugagne JB, Sosa Carrillo S, Kirch M, Köhler A, Batt G, Hersen P, Balancing a genetic toggle switch by real-time feedback control and periodic forcing, Nat Commun. 2017 Nov 17;8(1):1671.