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Program_project: Quantitative biology

All Publications

Erwan Dereure, Christophe Kervazo, Johanne Seguin, Anikitos Garofalakis, Nathalie Mignet, Elsa Angelini, Jean-Christophe Olivo-Marin, Sparse Non-Negative Matrix Factorization for Preclinical Bioluminescent Imaging, 2023 IEEE 20th International Symposium on Biomedical Imaging (ISBI).

H. Nguyen, A. Desgrange, A. Ochandorena-Saa, V. Benhamo, S. Meilhac and C. Zimmer, Deep learning-based detection of murine congenital heart defects from µCT scans, bioRxiv.

Legru A, Batista FA, Puszko AK, Bouillon A, Maurel M, Martinez M, Ejjoummany A, Ortega Varga L, Adler P, Méchaly A, Hadjadj M, Sosnowski P, Hopfgartner G, Alzari PM, Blondel A, Haouz A, Barale JC, Hernandez JF, Insights from structure-activity relationships and the binding mode of peptidic α-ketoamide inhibitors of the malaria drug target subtilisin-like SUB1., Eur J Med Chem 2024 Apr; 269(): 116308.

Perraud V, Vanderhoydonck B, Bouvier G, Dias de Melo G, Kilonda A, Koukni M, Jochmans D, Rogée S, Ben Khalifa Y, Kergoat L, Lannoy J, Van Buyten T, Izadi-Pruneyre N, Chaltin P, Neyts J, Marchand A, Larrous F, Bourhy H, Mechanism of action of phthalazinone derivatives against rabies virus., Antiviral Res 2024 Apr; 224(): 105838.

Pradeau-Phélut L, Etienne-Manneville S, Cytoskeletal crosstalk: A focus on intermediate filaments., Curr Opin Cell Biol 2024 Apr; 87(): 102325.

Mellouk N, Lensen A, Lopez-Montero N, Gil M, Valenzuela C, Klinkert K, Moneron G, Swistak L, DiGregorio D, Echard A, Enninga J, Post-translational targeting of Rab35 by the effector IcsB of Shigella determines intracellular bacterial niche formation., Cell Rep 2024 Apr; 43(4): 114034.

Houzelstein D, Eozenou C, Lagos CF, Elzaiat M, Bignon-Topalovic J, Gonzalez I, Laville V, Schlick L, Wankanit S, Madon P, Kirtane J, Athalye A, Buonocore F, Bigou S, Conway GS, Bohl D, Achermann JC, Bashamboo A, McElreavey K, A conserved NR5A1-responsive enhancer regulates SRY in testis-determination., Nat Commun 2024 Mar; 15(1): 2796.

T. Holm Bønnelykke, M-A. Chabry, E. Perthame, A. Desgrange and S. Meilhac, Notch3 is a genetic modifier of NODAL signalling for patterning asymmetry during mouse heart looping, bioRxiv.

Forest T, Achaz G, Marbouty M, Bignaud A, Thierry A, Koszul R, Milhes M, Lledo J, Pons JM, Fuchs J, Chromosome-level genome assembly of the European green woodpecker Picus viridis., G3 (Bethesda) 2024 Mar; (): .

Bastié N, Chapard C, Cournac A, Nejmi S, Mboumba H, Gadal O, Thierry A, Beckouët F, Koszul R, Sister chromatid cohesion halts DNA loop expansion., Mol Cell 2024 Mar; 84(6): 1139-1148.e5.

Legrand S, Saifudeen A, Bordelet H, Vernerey J, Guille A, Bignaud A, Thierry A, Acquaviva L, Gaudin M, Sanchez A, Johnson D, Friedrich A, Schacherer J, Neale MJ, Borde V, Koszul R, Llorente B, Absence of chromosome axis protein recruitment prevents meiotic recombination chromosome-wide in the budding yeast Lachancea kluyveri., Proc Natl Acad Sci U S A 2024 Mar; 121(12): e2312820121.

David Fernandez-Martinez, Youxin Kong, Sylvie Goussard, Agustin Zavala, Pauline Gastineau, Martial Jean-Pierre Rey, Gabriel Ayme, Julia Chamot‐rooke, Pierre Lafaye, Matthijn Vos, Ariel Mechaly, Guillaume Duménil, Cryo-EM structures of type IV pili complexed with nanobodies reveal immune escape mechanisms, Nature Communications, 2024, 15 (1), pp.2414. ⟨10.1038/s41467-024-46677-y⟩.

Merle M, Friedman L, Chureau C, Shoushtarizadeh A, Gregor T, Precise and scalable self-organization in mammalian pseudo-embryos., Nat Struct Mol Biol 2024 Mar; (): .

Martinez M, Bouillon A, Brûlé S, Raynal B, Haouz A, Alzari PM, Barale J-C, Prodomain-driven enzyme dimerization: a pH-dependent autoinhibition mechanism that controls Plasmodium Sub1 activity before merozoite egress., mBio 2024 Mar; 15(3): e0019824.

Minh-son Phan, Jang-Mi Kim, Cara Picciotto, Lydie Couturier, Nisha Veits, Khallil Mazouni, François Schweisguth, Symmetry breaking and fate divergence during lateral inhibition in Drosophila, BioRxiv a preprint server for Biology https://www.biorxiv.org/content/10.1101/2024.03.11.583933v1.

Korb A, Tajbakhsh S, Comai GE, Functional specialisation and coordination of myonuclei., Biol Rev Camb Philos Soc 2024 Mar; (): .

Planas D, Staropoli I, Michel V, Lemoine F, Donati F, Prot M, Porrot F, Guivel-Benhassine F, Jeyarajah B, Brisebarre A, Dehan O, Avon L, Bolland WH, Hubert M, Buchrieser J, Vanhoucke T, Rosenbaum P, Veyer D, Péré H, Lina B, Trouillet-Assant S, Hocqueloux L, Prazuck T, Simon-Loriere E, Schwartz O, Distinct evolution of SARS-CoV-2 Omicron XBB and BA.2.86/JN.1 lineages combining increased fitness and antibody evasion., Nat Commun 2024 Mar; 15(1): 2254.

Jain S, Belkadi H, Michaut A, Sart S, Gros J, Genet M, Baroud CN, Using a micro-device with a deformable ceiling to probe stiffness heterogeneities within 3D cell aggregates., Biofabrication 2024 Mar; (): .

Valentin Bonnet, Erik Maikranz, Marianne Madec, Nadia Vertti-Quintero, Céline Cuche, Marta Mastrogiovanni, Andrés Alcover, Vincenzo Di Bartolo, Charles N Baroud, Cancer-on-a-chip model shows that the adenomatous polyposis coli mutation impairs T cell engagement and killing of cancer spheroids, Proceedings of the National Academy of Sciences of the United States of America, 2024, 121 (11), pp.e2316500121. ⟨10.1073/pnas.2316500121⟩.

Ravichandran Y, Hänisch J, Murray K, Roca V, Dingli F, Loew D, Sabatet V, Boëda B, Stradal TE, Etienne-Manneville S, The distinct localization of CDC42 isoforms is responsible for their specific functions during migration., J Cell Biol 2024 Mar; 223(3): .

Soudais C, Schaus R, Bachelet C, Minet N, Mouasni S, Garcin C, Souza CL, David P, Cousu C, Asnagli H, Parker A, Palmquist-Gomes P, Sepulveda FE, Storck S, Meilhac SM, Fischer A, Martin E, Latour S, Inactivation of cytidine triphosphate synthase 1 prevents fatal auto-immunity in mice., Nat Commun 2024 Mar; 15(1): 1982.

Alison Hanson, Raphael Reme, Noah Telerman, Wataru Yamamoto, Jean-Christophe Olivo-Marin, Thibault Lagache, Rafael Yuste, Automatic monitoring of neural activity with single-cell resolution in behaving Hydra, Sci Rep 14, 5083 (2024).

Sanchez L, Lensen A, Connor MG, Hamon M, Enninga J, Valenzuela C, Shigella generates distinct IAM subpopulations during epithelial cell invasion to promote efficient intracellular niche formation., Eur J Cell Biol 2024 Mar; 103(1): 151381.

Miriam Labusch, Melina Thetiot, Emmanuel Than-Trong, David Morizet, Marion Coolen, Hugo Varet, Rachel Legendre, Sara Ortica, Laure Mancini, Laure Bally-Cuif, Prosaposin maintains adult neural stem cells in a state associated with deep quiescence, Stem Cell Reports, 2024, S2213-6711 (24), pp.00045-6. ⟨10.1016/j.stemcr.2024.02.007⟩.

Nouchikian L, Fernandez-Martinez D, Renard PY, Sabot C, Duménil G, Rey M, Chamot-Rooke J, Do Not Waste Time─Ensure Success in Your Cross-Linking Mass Spectrometry Experiments before You Begin., Anal Chem 2024 Feb; 96(6): 2506-2513.

Bastard P, Gervais A, Taniguchi M, Saare L, Särekannu K, Le Voyer T, Philippot Q, Rosain J, Bizien L, Asano T, Garcia-Prat M, Parra-Martínez A, Migaud M, Tsumura M, Conti F, Belot A, Rivière JG, Morio T, Tanaka J, Javouhey E, Haerynck F, Duvlis S, Ozcelik T, Keles S, Tandjaoui-Lambiotte Y, Escoda S, Husain M, Pan-Hammarström Q, Hammarström L, Ahlijah G, Abi Haidar A, Soudee C, Arseguel V, Abolhassani H, Sahanic S, Tancevski I, Nukui Y, Hayakawa S, Chrousos GP, Michos A, Tatsi EB, Filippatos F, Rodriguez-Palmero A, Troya J, Tipu I, Meyts I, Roussel L, Ostrowski SR, Schidlowski L, Prando C, Condino-Neto A, Cheikh N, Bousfiha AA, El Bakkouri J, , , , Peterson P, Pujol A, Lévy R, Quartier P, Vinh DC, Boisson B, Béziat V, Zhang SY, Borghesi A, Pession A, Andreakos E, Marr N, Mentis AA, Mogensen TH, Rodríguez-Gallego C, Soler-Palacin P, Colobran R, Tillmann V, Neven B, Trouillet-Assant S, Brodin P, Abel L, Jouanguy E, Zhang Q, Martinón-Torres F, Salas A, Gómez-Carballa A, Gonzalez-Granado LI, Kisand K, Okada S, Puel A, Cobat A, Casanova JL, Higher COVID-19 pneumonia risk associated with anti-IFN-α than with anti-IFN-ω auto-Abs in children., J Exp Med 2024 Feb; 221(2): .

Serizay J, Matthey-Doret C, Bignaud A, Baudry L, Koszul R, Orchestrating chromosome conformation capture analysis with Bioconductor., Nat Commun 2024 Feb; 15(1): 1072.

Chang YY, Valenzuela C, Lensen A, Lopez-Montero N, Sidik S, Salogiannis J, Enninga J, Rohde J, Microtubules provide force to promote membrane uncoating in vacuolar escape for a cyto-invasive bacterial pathogen., Nat Commun 2024 Feb; 15(1): 1065.

Saint-André V, Charbit B, Biton A, Rouilly V, Possémé C, Bertrand A, Rotival M, Bergstedt J, Patin E, Albert ML, Quintana-Murci L, Duffy D, Smoking changes adaptive immunity with persistent effects., Nature 2024 Feb; 626(8000): 827-835.

Obara CJ, Nixon-Abell J, Moore AS, Riccio F, Hoffman DP, Shtengel G, Xu CS, Schaefer K, Pasolli HA, Masson JB, Hess HF, Calderon CP, Blackstone C, Lippincott-Schwartz J, Motion of VAPB molecules reveals ER-mitochondria contact site subdomains., Nature 2024 Jan; (): .

Lise Hunault, Patrick England, Frédéric Barbut, Bruno Iannascoli, Ophélie Godon, François Déjardin, Christophe Thomas, Bruno Dupuy, Chunguang Guo, Lynn Macdonald, Guy Gorochov, Delphine Sterlin, Pierre Bruhns, A monoclonal antibody collection for C.difficile typing ?, Gut Pathog. 2024 Jan 19;16(1):4. .

Girolamo DD, Benavente-Diaz M, Murolo M, Grimaldi A, Lopes PT, Evano B, Kuriki M, Gioftsidi S, Laville V, Tinevez JY, Letort G, Mella S, Tajbakhsh S, Comai G, Extraocular muscle stem cells exhibit distinct cellular properties associated with non-muscle molecular signatures., Development 2024 Feb; 151(4): .

Emeline Perthame, Loïc Chartier, Jean-Claude George, Marie Varloud, Elisabeth Ferquel, Valérie Choumet, Case presentation and management of Lyme disease patients: a 9-year retrospective analysis in France, Frontiers in Medicine, 2024, 10, pp.1296486. ⟨10.3389/fmed.2023.1296486⟩.

Caterina Fuster-Barceló, Carlos García López de Haro, Estibaliz Gómez-de-Mariscal, Wei Ouyang, Jean-Christophe Olivo-Marin, Daniel Sage and Arrate Muñoz-Barrutia, Bridging the Gap: Integrating Cutting-edge Techniques into Biological Imaging with deepImageJ, bioRxiv, 2024.

Egill Richard, Baptiste Darracq, Eloi Littner, Claire Vit, Clémence Whiteway, Julia Bos, Florian Fournes, Geneviève Garriss, Valentin Conte, Delphine Lapaillerie, Vincent Parissi, François Rousset, Ole Skovgaard, David Bikard, Eduardo P. C. Rocha, Didier Mazel, Céline Loot, Cassette recombination dynamics within chromosomal integrons are regulated by toxin-antitoxin systems, Science Advances , 2024, 10 (2), pp.eadj3498. ⟨10.1126/sciadv.adj3498⟩.

Levayer R, Staying away from the breaking point: Probing the limits of epithelial cell elimination., Curr Opin Cell Biol 2024 Jan; 86(): 102316.

Matamoro-Vidal A, Cumming T, Davidović A, Levillayer F, Levayer R, Patterned apoptosis has an instructive role for local growth and tissue shape regulation in a fast-growing epithelium., Curr Biol 2024 Jan; (): .

Chervova A, Molliex A, Baymaz HI, Coux RX, Papadopoulou T, Mueller F, Hercul E, Fournier D, Dubois A, Gaiani N, Beli P, Festuccia N, Navarro P, Mitotic bookmarking redundancy by nuclear receptors in pluripotent cells., Nat Struct Mol Biol 2024 Jan; (): .

Ghizlene Lahlou, Charlotte Calvet, François Simon, Vincent Michel, Lauranne Alciato, Baptiste Plion, Jacques Boutet de Monvel, Marie-José Lecomte, Mathieu Beraneck, Christine Petit, Saaid Safieddine, Extended timeframe for restoring inner ear function through gene therapy in Usher1G preclinical model, JCI Insight, In press, ⟨10.1172/jci.insight.169504⟩.

Martinez FJ, White M, Guillotte-Blisnick M, Huon C, Boucharlat A, Agou F, England P, Popovici J, Hou MM, Silk SE, Barrett JR, Nielsen CM, Reimer JM, Mukherjee P, Chauhan VS, Minassian AM, Draper SJ, Chitnis CE, PvDBPII elicits multiple antibody-mediated mechanisms that reduce growth in a Plasmodium vivax challenge trial., NPJ Vaccines 2024 Jan; 9(1): 10.

Bignaud A, Cockram C, Borde C, Groseille J, Allemand E, Thierry A, Marbouty M, Mozziconacci J, Espéli O, Koszul R, Transcription-induced domains form the elementary constraining building blocks of bacterial chromosomes., Nat Struct Mol Biol 2024 Jan; (): .

Emeline Vernhes, Linda Larbi Chérif, Nicolas Ducrot, Clément Vanbergue, Malika Ouldali, Lena Zig, N'diaye Sidibe, Sylviane Hoos, Luis Ramirez-Chamorro, Madalena Renouard, Ombeline Rossier, Patrick England, Guy Schoehn, Pascale Boulanger, Karim Benihoud, Antigen self-anchoring onto bacteriophage T5 capsid-like particles for vaccine design, 2024 Jan 4;9(1):6. doi: 10.1038/s41541-023-00798-5..

Céline Loot, Gael A Millot, Egill Richard, Eloi Littner, Claire Vit, Frédéric Lemoine, Bertrand Néron, Jean Cury, Baptiste Darracq, Théophile Niault, Delphine Lapaillerie, Vincent Parissi, Eduardo P C Rocha, Didier Mazel, Integron cassettes integrate into bacterial genomes via widespread non-classical attG sites, Nature Microbiology, 2024, 9 (1), pp.228-240. ⟨10.1038/s41564-023-01548-y⟩.

Neitthoffer B, Alvarez F, Larrous F, Caillet-Saguy C, Etienne-Manneville S, Boëda B, A short sequence in the tail of SARS-CoV-2 envelope protein controls accessibility of its PDZ-binding motif to the cytoplasm., J Biol Chem 2024 Jan; 300(1): 105575.

García López de Haro C, Dallongeville S, Musset T, Gómez-de-Mariscal E, Sage D, Ouyang W, Muñoz-Barrutia A, Tinevez JY, Olivo-Marin JC, JDLL: a library to run deep learning models on Java bioimage informatics platforms., Nat Methods 2024 Jan; 21(1): 7-8.

Hunault L, Auria E, England P, Deschamps J, Briandet R, Kremer V, Iannascoli B, Vidal-Maison L, Guo C, Macdonald L, Péchiné S, Denève-Larrazet C, Dupuy B, Gorochov G, Bruhns P, Sterlin D, Anti-S-layer monoclonal antibodies impact Clostridioides difficile physiology., Gut Microbes 2024 ; 16(1): 2301147.

Peglion F, Etienne-Manneville S, Cell polarity changes in cancer initiation and progression., J Cell Biol 2024 Jan; 223(1): .

Rotival M, Quintana-Murci L, Environmental variation and genetic diversity contribute to population differences in immune responses to SARS-CoV-2 and COVID-19 risk., Genes Immun 2023 Dec; (): .

Li L, Ma X, Cui Y, Rotival M, Chen W, Zou X, Ding R, Qin Y, Wang Q, Quintana-Murci L, Li W, Immune-response 3’UTR alternative polyadenylation quantitative trait loci contribute to variation in human complex traits and diseases., Nat Commun 2023 Dec; 14(1): 8347.

Bolland W, Michel V, Planas D, Hubert M, Staropoli I, Guivel-Benhassine F, Porrot F, N'Debi M, Rodriguez C, Fourati S, Prot M, Planchais C, Hocqueloux L, Simon-Lorière E, Mouquet H, Prazuck T, Pawlotsky J-M, Bruel T, Schwartz O, Buchrieser J, High fusion and cytopathy of SARS-CoV-2 variant B.1.640.1., J Virol 2023 Dec; (): e0135123.

Niault T, Czarnecki J, Lambérioux M, Mazel D, Val M-E, Cell cycle-coordinated maintenance of the Vibrio bipartite genome., EcoSal Plus 2023 Dec; 11(1): eesp00082022.

Guilvout I, Samsudin F, Huber RG, Bond PJ, Bardiaux B, Francetic O, Membrane platform protein PulF of the Klebsiella type II secretion system forms a trimeric ion channel essential for endopilus assembly and protein secretion., mBio 2023 Dec; (): e0142323.

Tejada-Arranz A, Lulla A, Bouilloux-Lafont M, Turlin E, Pei XY, Douché T, Matondo M, Williams AH, Raynal B, Luisi BF, De Reuse H, Acetylation regulates the oligomerization state and activity of RNase J, the Helicobacter pylori major ribonuclease., Nat Commun 2023 Dec; 14(1): 8072.

Boëda B, Michel V, Etournay R, England P, Rigaud S, Mary H, Gobaa S, Etienne-Manneville S, SCRIB controls apical contractility during epithelial differentiation., J Cell Biol 2023 Dec; 222(12): .

Delavy M, Sertour N, Patin E, Le Chatelier E, Cole N, Dubois F, Xie Z, Saint-André V, Manichanh C, Walker AW, Quintana-Murci L, Duffy D, d'Enfert C, Bougnoux ME, Consortium MI, Unveiling Candida albicans intestinal carriage in healthy volunteers: the role of micro- and mycobiota, diet, host genetics and immune response., Gut Microbes 2023 Dec; 15(2): 2287618.

Khare H, Dongo Mendoza N, Zurzolo C, CellWalker: a user-friendly and modular computational pipeline for morphological analysis of microscopy images., Bioinformatics 2023 Dec; 39(12): .

J Michael Henderson, Nina Ljubojevic, Sevan Belian, Thibault Chaze, Daryl Castaneda, Aude Battistella, Quentin Giai Gianetto, Mariette Matondo, Stéphanie Descroix, Patricia Bassereau, Chiara Zurzolo, Tunnelling nanotube formation is driven by Eps8/IRSp53‐dependent linear actin polymerization, EMBO Journal, 2023, pp.e113761. ⟨10.15252/embj.2023113761⟩.

Grasekamp KP, Beaud Benyahia B, Taib N, Audrain B, Bardiaux B, Rossez Y, Izadi-Pruneyre N, Lejeune M, Trivelli X, Chouit Z, Guerardel Y, Ghigo JM, Gribaldo S, Beloin C, The Mla system of diderm Firmicute Veillonella parvula reveals an ancestral transenvelope bridge for phospholipid trafficking., Nat Commun 2023 Nov; 14(1): 7642.

Schindler D, Walker RSK, Jiang S, Brooks AN, Wang Y, Müller CA, Cockram C, Luo Y, García A, Schraivogel D, Mozziconacci J, Pena N, Assari M, Sánchez Olmos MDC, Zhao Y, Ballerini A, Blount BA, Cai J, Ogunlana L, Liu W, Jönsson K, Abramczyk D, Garcia-Ruiz E, Turowski TW, Swidah R, Ellis T, Pan T, Antequera F, Shen Y, Nieduszynski CA, Koszul R, Dai J, Steinmetz LM, Boeke JD, Cai Y, Design, construction, and functional characterization of a tRNA neochromosome in yeast., Cell 2023 Nov; 186(24): 5237-5253.e22.

Sadi M, Carvalho N, Léger C, Vitorge B, Ladant D, Guijarro JI, Chenal A, B2LiVe, a label-free 1D-NMR method to quantify the binding of amphitropic peptides or proteins to membrane vesicles., Cell Rep Methods 2023 Nov; 3(11): 100624.

Keck C, Enninga J, Swistak L, Caught in the act: In situ visualization of bacterial secretion systems by cryo-electron tomography., Mol Microbiol 2023 Nov; (): .

Valenzuela-Valderas KN, Farrashzadeh E, Chang YY, Shi Y, Raudonis R, Leung BM, Rohde JR, Enninga J, Cheng Z, RACK1 promotes Shigella flexneri actin-mediated invasion, motility, and cell-to-cell spreading., iScience 2023 Nov; 26(11): 108216.

Stevick RJ, Audrain B, Bedu S, Dray N, Ghigo JM, Pérez-Pascual D, Anti-diarrheal drug loperamide induces dysbiosis in zebrafish microbiota via bacterial inhibition., Microbiome 2023 Nov; 11(1): 252.

Crozet F, Levayer R, Emerging roles and mechanisms of ERK pathway mechanosensing., Cell Mol Life Sci 2023 Nov; 80(12): 355.

Luo J, Vale-Silva LA, Raghavan AR, Mercy G, Heldrich J, Sun X, Li MK, Zhang W, Agmon N, Yang K, Cai J, Stracquadanio G, Thierry A, Zhao Y, Coelho C, McCulloch LH, Lauer S, , Kaback DB, Bader JS, Mitchell LA, Mozziconacci J, Koszul R, Hochwagen A, Boeke JD, Synthetic chromosome fusion: Effects on mitotic and meiotic genome structure and function., Cell Genom 2023 Nov; 3(11): 100439.

Le Voyer T, Parent AV, Liu X, Cederholm A, Gervais A, Rosain J, Nguyen T, Perez Lorenzo M, Rackaityte E, Rinchai D, Zhang P, Bizien L, Hancioglu G, Ghillani-Dalbin P, Charuel JL, Philippot Q, Gueye MS, Maglorius Renkilaraj MRL, Ogishi M, Soudée C, Migaud M, Rozenberg F, Momenilandi M, Riller Q, Imberti L, Delmonte OM, Müller G, Keller B, Orrego J, Franco Gallego WA, Rubin T, Emiroglu M, Parvaneh N, Eriksson D, Aranda-Guillen M, Berrios DI, Vong L, Katelaris CH, Mustillo P, Raedler J, Bohlen J, Bengi Celik J, Astudillo C, Winter S, , , McLean C, Guffroy A, DeRisi JL, Yu D, Miller C, Feng Y, Guichard A, Béziat V, Bustamante J, Pan-Hammarström Q, Zhang Y, Rosen LB, Holland SM, Bosticardo M, Kenney H, Castagnoli R, Slade CA, Boztuğ K, Mahlaoui N, Latour S, Abraham RS, Lougaris V, Hauck F, Sediva A, Atschekzei F, Sogkas G, Poli MC, Slatter MA, Palterer B, Keller MD, Pinzon-Charry A, Sullivan A, Droney L, Suan D, Wong M, Kane A, Hu H, Ma C, Grombiříková H, Ciznar P, Dalal I, Aladjidi N, Hie M, Lazaro E, Franco J, Keles S, Malphettes M, Pasquet M, Maccari ME, Meinhardt A, Ikinciogullari A, Shahrooei M, Celmeli F, Frosk P, Goodnow CC, Gray PE, Belot A, Kuehn HS, Rosenzweig SD, Miyara M, Licciardi F, Servettaz A, Barlogis V, Le Guenno G, Herrmann VM, Kuijpers T, Ducoux G, Sarrot-Reynauld F, Schuetz C, Cunningham-Rundles C, Rieux-Laucat F, Tangye SG, Sobacchi C, Doffinger R, Warnatz K, Grimbacher B, Fieschi C, Berteloot L, Bryant VL, Trouillet Assant S, Su H, Neven B, Abel L, Zhang Q, Boisson B, Cobat A, Jouanguy E, Kampe O, Bastard P, Roifman CM, Landegren N, Notarangelo LD, Anderson MS, Casanova JL, Puel A, Autoantibodies against type I IFNs in humans with alternative NF-κB pathway deficiency., Nature 2023 Nov; 623(7988): 803-813.

Sáenz-de-Santa-María I, Henderson JM, Pepe A, Zurzolo C, Identification and Characterization of Tunneling Nanotubes for Intercellular Trafficking., Curr Protoc 2023 Nov; 3(11): e939.

Saunders N, Fernandez I, Planchais C, Michel V, Rajah MM, Baquero Salazar E, Postal J, Porrot F, Guivel-Benhassine F, Blanc C, Chauveau-Le Friec G, Martin A, Grzelak L, Oktavia RM, Meola A, Ahouzi O, Hoover-Watson H, Prot M, Delaune D, Cornelissen M, Deijs M, Meriaux V, Mouquet H, Simon-Lorière E, van der Hoek L, Lafaye P, Rey F, Buchrieser J, Schwartz O, TMPRSS2 is a functional receptor for human coronavirus HKU1., Nature 2023 Oct; (): .

Ascel Samba-Louaka, Elisabeth Labruyère, Mariette Matondo, Marie Locard-Paulet, Jean-Christophe Olivo-Marin and Nancy Guillen , Encystation and Stress Responses under the Control of Ubiquitin-like Proteins in Pathogenic Amoebae, Microorganisms.

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Ferrières L, Hémery G, Nham T, Guérout AM, Mazel D, Beloin C, Ghigo JM, Silent mischief: bacteriophage Mu insertions contaminate products of Escherichia coli random mutagenesis performed using suicidal transposon delivery plasmids mobilized by broad-host-range RP4 conjugative machinery, J. Bacteriol. 2010 Dec;192(24):6418-27.

Marcio Marim, Michael Atlan, Elsa Angelini and Jean-Christophe Olivo-Marin, Compressed Sensing Applications for Biological Microscopy, IEEE Workshop on Signal Processing Systems (SIPS), San Francisco, USA 2010.

Lescroart F, Kelly RG, Le Garrec JF, Nicolas JF, Meilhac SM, Buckingham M, Clonal analysis reveals common lineage relationships between head muscles and second heart field derivatives in the mouse embryo., Development 2010 Oct; 137(19): 3269-79.

Laine E, Martínez L, Blondel A, Malliavin TE, Activation of the edema factor of Bacillus anthracis by calmodulin: evidence of an interplay between the EF-calmodulin interaction and calcium binding, Biophys. J. 2010 Oct;99(7):2264-72.

van Agthoven J, Zhang C, Tallet E, Raynal B, Hoos S, Baron B, England P, Goffin V, Broutin I, Structural characterization of the stem-stem dimerization interface between prolactin receptor chains complexed with the natural hormone, J. Mol. Biol. 2010 Nov;404(1):112-26.

Song Y, Manneville P, Baroud CN, Local interactions and the global organization of a two-phase flow in a branching tree, Phys. Rev. Lett. 2010 Sep;105(13):134501.

Leduc C, Pavin N, Jülicher F, Diez S, Collective behavior of antagonistically acting kinesin-1 motors, Phys. Rev. Lett. 2010 Sep;105(12):128103.

Dangla R, Gallaire F, Baroud CN, Microchannel deformations due to solvent-induced PDMS swelling, Lab Chip 2010 Nov;10(21):2972-8.

Martínez-Cruz B, Vitalis R, Ségurel L, Austerlitz F, Georges M, Théry S, Quintana-Murci L, Hegay T, Aldashev A, Nasyrova F, Heyer E, In the heartland of Eurasia: the multilocus genetic landscape of Central Asian populations, Eur. J. Hum. Genet. 2011 Feb;19(2):216-23.

Le Roux F, Labreuche Y, Davis BM, Iqbal N, Mangenot S, Goarant C, Mazel D, Waldor MK, Virulence of an emerging pathogenic lineage of Vibrio nigripulchritudo is dependent on two plasmids, Environ. Microbiol. 2011 Feb;13(2):296-306.

Theis S, Patel K, Valasek P, Otto A, Pu Q, Harel I, Tzahor E, Tajbakhsh S, Christ B, Huang R, The occipital lateral plate mesoderm is a novel source for vertebrate neck musculature, Development 2010 Sep;137(17):2961-71.

Thompson FL, Thompson CC, Vicente AC, Klose KE, , Vibrio2009: the third international conference on the biology of Vibrios, Mol. Microbiol. 2010 Sep;77(5):1065-71.

Caldeira S, Dumenil G, Pathogens under scrutiny in the south of France, EMBO Mol Med 2010 Sep;2(9):331-4.

Fayolle C, Davi M, Dong H, Ritzel D, Le Page A, Knipping F, Majlessi L, Ladant D, Leclerc C, Induction of anti-Tat neutralizing antibodies by the CyaA vector targeting dendritic cells: influence of the insertion site and of the delivery of multicopies of the dominant Tat B-cell epitope, Vaccine 2010 Oct;28(42):6930-41.

Norton W, Bally-Cuif L, Adult zebrafish as a model organism for behavioural genetics, BMC Neurosci 2010;11:90.

Tajbakhsh S, [Unravelling the mysteries of biased DNA segregation during mitosis], Med Sci (Paris) 2010 Aug-Sep;26(8-9):696-8.

Zhadanov SI, Dulik MC, Markley M, Jennings GW, Gaieski JB, Elias G, Schurr TG, , Genetic heritage and native identity of the Seaconke Wampanoag tribe of Massachusetts, Am. J. Phys. Anthropol. 2010 Aug;142(4):579-89.

Rouault H, Mazouni K, Couturier L, Hakim V, Schweisguth F, Genome-wide identification of cis-regulatory motifs and modules underlying gene coregulation using statistics and phylogeny, Proc. Natl. Acad. Sci. U.S.A. 2010 Aug;107(33):14615-20.

Schmidt-Hieber C, Bischofberger J, Fast sodium channel gating supports localized and efficient axonal action potential initiation, J. Neurosci. 2010 Jul;30(30):10233-42.

Labreuche Y, Le Roux F, Henry J, Zatylny C, Huvet A, Lambert C, Soudant P, Mazel D, Nicolas JL, Vibrio aestuarianus zinc metalloprotease causes lethality in the Pacific oyster Crassostrea gigas and impairs the host cellular immune defenses, Fish Shellfish Immunol. 2010 Nov;29(5):753-8.

Bahloul A, Michel V, Hardelin JP, Nouaille S, Hoos S, Houdusse A, England P, Petit C, Cadherin-23, myosin VIIa and harmonin, encoded by Usher syndrome type I genes, form a ternary complex and interact with membrane phospholipids, Hum. Mol. Genet. 2010 Sep;19(18):3557-65.

Loot C, Bikard D, Rachlin A, Mazel D, Cellular pathways controlling integron cassette site folding., EMBO J 2010 Aug; 29(15): 2623-34.

Miquerol L, Moreno-Rascon N, Beyer S, Dupays L, Meilhac SM, Buckingham ME, Franco D, Kelly RG, Biphasic development of the mammalian ventricular conduction system., Circ Res 2010 Jul; 107(1): 153-61.

Abbyad P, Tharaux PL, Martin JL, Baroud CN, Alexandrou A, Sickling of red blood cells through rapid oxygen exchange in microfluidic drops, Lab Chip 2010 Oct;10(19):2505-12.

Campos M, Nilges M, Cisneros DA, Francetic O, Detailed structural and assembly model of the type II secretion pilus from sparse data, Proc. Natl. Acad. Sci. U.S.A. 2010 Jul;107(29):13081-6.

Nalpas B, Lavialle-Meziani R, Plancoulaine S, Jouanguy E, Nalpas A, Munteanu M, Charlotte F, Ranque B, Patin E, Heath S, Fontaine H, Vallet-Pichard A, Pontoire D, Bourlière M, Casanova JL, Lathrop M, Bréchot C, Poynard T, Matsuda F, Pol S, Abel L, Interferon gamma receptor 2 gene variants are associated with liver fibrosis in patients with chronic hepatitis C infection, Gut 2010 Aug;59(8):1120-6.

Ramboarina S, Garnett JA, Zhou M, Li Y, Peng Z, Taylor JD, Lee WC, Bodey A, Murray JW, Alguel Y, Bergeron J, Bardiaux B, Sawyer E, Isaacson R, Tagliaferri C, Cota E, Nilges M, Simpson P, Ruiz T, Wu H, Matthews S, Structural insights into serine-rich fimbriae from Gram-positive bacteria, J. Biol. Chem. 2010 Oct;285(42):32446-57.

Baroud CN, Gallaire F, Dangla R, Dynamics of microfluidic droplets, Lab Chip 2010 Aug;10(16):2032-45.

Lasserre R, Charrin S, Cuche C, Danckaert A, Thoulouze MI, de Chaumont F, Duong T, Perrault N, Varin-Blank N, Olivo-Marin JC, Etienne-Manneville S, Arpin M, Di Bartolo V, Alcover A, , Ezrin tunes T-cell activation by controlling Dlg1 and microtubule positioning at the immunological synapse., EMBO J. 2010 Jul; 29(14): 2301-14.

Scherzer-Attali R, Pellarin R, Convertino M, Frydman-Marom A, Egoz-Matia N, Peled S, Levy-Sakin M, Shalev DE, Caflisch A, Gazit E, Segal D, Complete phenotypic recovery of an Alzheimer’s disease model by a quinone-tryptophan hybrid aggregation inhibitor, PLoS ONE 2010;5(6):e11101.

Bikard D, Julié-Galau S, Cambray G, Mazel D, The synthetic integron: an in vivo genetic shuffling device, Nucleic Acids Res. 2010 Aug;38(15):e153.

Bardiaux B, Favier A, Etzkorn M, Baldus M, Böckmann A, Nilges M, Malliavin TE, Simultaneous use of solution, solid-state NMR and X-ray crystallography to study the conformational landscape of the Crh protein during oligomerization and crystallization, Adv Appl Bioinform Chem 2010;3:25-38.

Laine E, Goncalves C, Karst JC, Lesnard A, Rault S, Tang WJ, Malliavin TE, Ladant D, Blondel A, Use of allostery to identify inhibitors of calmodulin-induced activation of Bacillus anthracis edema factor, Proc. Natl. Acad. Sci. U.S.A. 2010 Jun;107(25):11277-82.

Chapouton P, Skupien P, Hesl B, Coolen M, Moore JC, Madelaine R, Kremmer E, Faus-Kessler T, Blader P, Lawson ND, Bally-Cuif L, Notch activity levels control the balance between quiescence and recruitment of adult neural stem cells, J. Neurosci. 2010 Jun;30(23):7961-74.

Henrique D, Bally-Cuif L, A cross-disciplinary approach to understanding neural stem cells in development and disease, Development 2010 Jun;137(12):1933-8.

Sinha DK, Neveu P, Gagey N, Aujard I, Le Saux T, Rampon C, Gauron C, Kawakami K, Leucht C, Bally-Cuif L, Volovitch M, Bensimon D, Jullien L, Vriz S, Photoactivation of the CreER T2 recombinase for conditional site-specific recombination with high spatiotemporal resolution, Zebrafish 2010 Jun;7(2):199-204.

Boutet de Monvel J, Petit C, Wrapping up stereocilia rootlets, Cell 2010 May;141(5):748-50.

Baharoglu Z, Lestini R, Duigou S, Michel B, RNA polymerase mutations that facilitate replication progression in the rep uvrD recF mutant lacking two accessory replicative helicases, Mol. Microbiol. 2010 Jul;77(2):324-36.

Barducci A, Bonomi M, Parrinello M, Linking well-tempered metadynamics simulations with experiments, Biophys. J. 2010 May;98(9):L44-6.

Henriques R, Lelek M, Fornasiero EF, Valtorta F, Zimmer C, Mhlanga MM, QuickPALM: 3D real-time photoactivation nanoscopy image processing in ImageJ, Nat. Methods 2010 May;7(5):339-40.

März M, Chapouton P, Diotel N, Vaillant C, Hesl B, Takamiya M, Lam CS, Kah O, Bally-Cuif L, Strähle U, Heterogeneity in progenitor cell subtypes in the ventricular zone of the zebrafish adult telencephalon, Glia 2010 May;58(7):870-88.

Grassart A, Meas-Yedid V, Dufour A, Olivo-Marin JC, Dautry-Varsat A, Sauvonnet N, Pak1 phosphorylation enhances cortactin-N-WASP interaction in clathrin-caveolin-independent endocytosis, Traffic 2010 Aug;11(8):1079-91.

Laval G, Patin E, Barreiro LB, Quintana-Murci L, Formulating a historical and demographic model of recent human evolution based on resequencing data from noncoding regions, PLoS ONE 2010;5(4):e10284.

Benhra N, Vignaux F, Dussert A, Schweisguth F, Le Borgne R, Neuralized promotes basal to apical transcytosis of delta in epithelial cells, Mol. Biol. Cell 2010 Jun;21(12):2078-86.

Mueller F, Mazza D, Stasevich TJ, McNally JG, FRAP and kinetic modeling in the analysis of nuclear protein dynamics: what do we really know?, Curr. Opin. Cell Biol. 2010 Jun;22(3):403-11.

Valerio-Lepiniec M, Aumont-Nicaise M, Roux C, Raynal B, England P, Badet B, Badet-Denisot MA, Desmadril M, Analysis of the Escherichia coli glucosamine-6-phosphate synthase activity by isothermal titration calorimetry and differential scanning calorimetry, Arch. Biochem. Biophys. 2010 Jun;498(2):95-104.

Brodersen KH, Haiss F, Ong CS, Jung F, Tittgemeyer M, Buhmann JM, Weber B, Stephan KE, Model-based feature construction for multivariate decoding, Neuroimage 2011 May;56(2):601-15.

Melki MT, Saïdi H, Dufour A, Olivo-Marin JC, Gougeon ML, Escape of HIV-1-infected dendritic cells from TRAIL-mediated NK cell cytotoxicity during NK-DC cross-talk–a pivotal role of HMGB1, PLoS Pathog. 2010 Apr;6(4):e1000862.

Artus C, Boujrad H, Bouharrour A, Brunelle MN, Hoos S, Yuste VJ, Lenormand P, Rousselle JC, Namane A, England P, Lorenzo HK, Susin SA, AIF promotes chromatinolysis and caspase-independent programmed necrosis by interacting with histone H2AX, EMBO J. 2010 May;29(9):1585-99.

Rodrigues CD, Enninga J, The ‘when and whereabouts’ of injected pathogen effectors, Nat. Methods 2010 Apr;7(4):267-9.

Etournay R, Lepelletier L, Boutet de Monvel J, Michel V, Cayet N, Leibovici M, Weil D, Foucher I, Hardelin JP, Petit C, Cochlear outer hair cells undergo an apical circumference remodeling constrained by the hair bundle shape, Development 2010 Apr;137(8):1373-83.

Yao Y, Demoinet E, Saveanu C, Lenormand P, Jacquier A, Fromont-Racine M, Ecm1 is a new pre-ribosomal factor involved in pre-60S particle export, RNA 2010 May;16(5):1007-17.

Quintana-Murci L, Harmant C, Quach H, Balanovsky O, Zaporozhchenko V, Bormans C, van Helden PD, Hoal EG, Behar DM, Strong maternal Khoisan contribution to the South African coloured population: a case of gender-biased admixture, Am. J. Hum. Genet. 2010 Apr;86(4):611-20.

Duménil G, Chilean scientists rally after quake, Science 2010 Mar;327(5972):1451-2.

Marim MM, Atlan M, Angelini E, Olivo-Marin JC, Compressed sensing with off-axis frequency-shifting holography., Opt Lett 2010 Mar; 35(6): 871-3.

Stasevich TJ, Mueller F, Brown DT, McNally JG, Dissecting the binding mechanism of the linker histone in live cells: an integrated FRAP analysis, EMBO J. 2010 Apr;29(7):1225-34.

Limongelli V, Bonomi M, Marinelli L, Gervasio FL, Cavalli A, Novellino E, Parrinello M, Molecular basis of cyclooxygenase enzymes (COXs) selective inhibition, Proc. Natl. Acad. Sci. U.S.A. 2010 Mar;107(12):5411-6.

Lesage S, Patin E, Condroyer C, Leutenegger AL, Lohmann E, Giladi N, Bar-Shira A, Belarbi S, Hecham N, Pollak P, Ouvrard-Hernandez AM, Bardien S, Carr J, Benhassine T, Tomiyama H, Pirkevi C, Hamadouche T, Cazeneuve C, Basak AN, Hattori N, Dürr A, Tazir M, Orr-Urtreger A, Quintana-Murci L, Brice A, , Parkinson’s disease-related LRRK2 G2019S mutation results from independent mutational events in humans, Hum. Mol. Genet. 2010 May;19(10):1998-2004.

Srivastava A, Gangnard S, Round A, Dechavanne S, Juillerat A, Raynal B, Faure G, Baron B, Ramboarina S, Singh SK, Belrhali H, England P, Lewit-Bentley A, Scherf A, Bentley GA, Gamain B, Full-length extracellular region of the var2CSA variant of PfEMP1 is required for specific, high-affinity binding to CSA, Proc. Natl. Acad. Sci. U.S.A. 2010 Mar;107(11):4884-9.

Tolu S, Avale ME, Nakatani H, Pons S, Parnaudeau S, Tronche F, Vogt A, Monyer H, Vogel R, de Chaumont F, Olivo-Marin JC, Changeux JP, Maskos U, , A versatile system for the neuronal subtype specific expression of lentiviral vectors., FASEB J 2010 Mar; 24(3): 723-30.

Bardin AJ, Perdigoto CN, Southall TD, Brand AH, Schweisguth F, Transcriptional control of stem cell maintenance in the Drosophila intestine, Development 2010 Mar;137(5):705-14.

Cassar O, Bassot S, Plancoulaine S, Quintana-Murci L, Harmant C, Gurtsevitch V, Senyuta NB, Yakovleva LS, de The G, Gessain A, Human herpesvirus 8, Southern Siberia, Emerging Infect. Dis. 2010 Mar;16(3):580-2.

Ramirez MS, Don M, Merkier AK, Bistué AJ, Zorreguieta A, Centrón D, Tolmasky ME, Naturally competent Acinetobacter baumannii clinical isolate as a convenient model for genetic studies, J. Clin. Microbiol. 2010 Apr;48(4):1488-90.

Hamel S, Fantini J, Schweisguth F, Notch ligand activity is modulated by glycosphingolipid membrane composition in Drosophila melanogaster, J. Cell Biol. 2010 Feb;188(4):581-94.

Krey T, d'Alayer J, Kikuti CM, Saulnier A, Damier-Piolle L, Petitpas I, Johansson DX, Tawar RG, Baron B, Robert B, England P, Persson MA, Martin A, Rey FA, The disulfide bonds in glycoprotein E2 of hepatitis C virus reveal the tertiary organization of the molecule, PLoS Pathog. 2010 Feb;6(2):e1000762.

Schoemans R, Aigrot MS, Wu C, Marée R, Hong P, Belachew S, Josse C, Lubetzki C, Bours V, Oligodendrocyte development and myelinogenesis are not impaired by high concentrations of phenylalanine or its metabolites, J. Inherit. Metab. Dis. 2010 Apr;33(2):113-20.

Chayot R, Montagne B, Mazel D, Ricchetti M, , An end-joining repair mechanism in Escherichia coli., Proc Natl Acad Sci U S A 2010 Feb; 107(5): 2141-6.

Sotomayor Pérez AC, Karst JC, Davi M, Guijarro JI, Ladant D, Chenal A, Characterization of the regions involved in the calcium-induced folding of the intrinsically disordered RTX motifs from the bordetella pertussis adenylate cyclase toxin, J. Mol. Biol. 2010 Mar;397(2):534-49.

Das B, Bischerour J, Val ME, Barre FX, Molecular keys of the tropism of integration of the cholera toxin phage., Proc Natl Acad Sci U S A 2010 Mar; 107(9): 4377-82.

Préhaud C, Wolff N, Terrien E, Lafage M, Mégret F, Babault N, Cordier F, Tan GS, Maitrepierre E, Ménager P, Chopy D, Hoos S, England P, Delepierre M, Schnell MJ, Buc H, Lafon M, Attenuation of rabies virulence: takeover by the cytoplasmic domain of its envelope protein, Sci Signal 2010 Jan;3(105):ra5.

Karst JC, Sotomayor Pérez AC, Guijarro JI, Raynal B, Chenal A, Ladant D, Calmodulin-induced conformational and hydrodynamic changes in the catalytic domain of Bordetella pertussis adenylate cyclase toxin, Biochemistry 2010 Jan;49(2):318-28.

San Millan A, Garcia-Cobos S, Escudero JA, Hidalgo L, Gutierrez B, Carrilero L, Campos J, Gonzalez-Zorn B, Haemophilus influenzae clinical isolates with plasmid pB1000 bearing blaROB-1: fitness cost and interspecies dissemination, Antimicrob. Agents Chemother. 2010 Apr;54(4):1506-11.

Ghoul BE, Squalli T, Servais A, Elie C, Meas-Yedid V, Trivint C, Vanmassenhove J, Grünfeld JP, Olivo-Marin JC, Thervet E, Noël LH, Prié D, Fakhouri F, Urinary procollagen III aminoterminal propeptide (PIIINP): a fibrotest for the nephrologist, Clin J Am Soc Nephrol 2010 Feb;5(2):205-10.

Wong Ng J, Chatenay D, Robert J, Poirier MG, Plasmid copy number noise in monoclonal populations of bacteria, Phys Rev E Stat Nonlin Soft Matter Phys 2010 Jan;81(1 Pt 1):011909.

Therizols P, Duong T, Dujon B, Zimmer C, Fabre E, Chromosome arm length and nuclear constraints determine the dynamic relationship of yeast subtelomeres, Proc. Natl. Acad. Sci. U.S.A. 2010 Feb;107(5):2025-30.

Duperthuy M, Binesse J, Le Roux F, Romestand B, Caro A, Got P, Givaudan A, Mazel D, Bachère E, Destoumieux-Garzón D, The major outer membrane protein OmpU of Vibrio splendidus contributes to host antimicrobial peptide resistance and is required for virulence in the oyster Crassostrea gigas, Environ. Microbiol. 2010 Apr;12(4):951-63.

Ray K, Bobard A, Danckaert A, Paz-Haftel I, Clair C, Ehsani S, Tang C, Sansonetti P, Tran GV, Enninga J, Tracking the dynamic interplay between bacterial and host factors during pathogen-induced vacuole rupture in real time, Cell. Microbiol. 2010 Apr;12(4):545-56.

Jové T, Da Re S, Denis F, Mazel D, Ploy MC, Inverse correlation between promoter strength and excision activity in class 1 integrons, PLoS Genet. 2010 Jan;6(1):e1000793.

Broutin I, Jomain JB, Tallet E, van Agthoven J, Raynal B, Hoos S, Kragelund BB, Kelly PA, Ducruix A, England P, Goffin V, Crystal structure of an affinity-matured prolactin complexed to its dimerized receptor reveals the topology of hormone binding site 2, J. Biol. Chem. 2010 Mar;285(11):8422-33.

Juillerat A, Igonet S, Vigan-Womas I, Guillotte M, Gangnard S, Faure G, Baron B, Raynal B, Mercereau-Puijalon O, Bentley GA, Biochemical and biophysical characterisation of DBL1alpha1-varO, the rosetting domain of PfEMP1 from the VarO line of Plasmodium falciparum, Mol. Biochem. Parasitol. 2010 Apr;170(2):84-92.

Berlemont S, Olivo-Marin JC, Combining local filtering and multiscale analysis for edge, ridge, and curvilinear objects detection, IEEE Trans Image Process 2010 Jan;19(1):74-84.

Marim M, Angelini E, Olivo-Marin JC, Denoising in fluorescence microscopy using compressed sensing with multiple reconstructions and non-local merging., Annu Int Conf IEEE Eng Med Biol Soc 2010 ; 2010(): 3394-7.

Simpson N, Audry L, Enninga J, Tracking the secretion of fluorescently labeled type III effectors from single bacteria in real time, Methods Mol. Biol. 2010;619:241-56.

Brigitte M, Schilte C, Plonquet A, Baba-Amer Y, Henri A, Charlier C, Tajbakhsh S, Albert M, Gherardi RK, Chrétien F, Muscle resident macrophages control the immune cell reaction in a mouse model of notexin-induced myoinjury, Arthritis Rheum. 2010 Jan;62(1):268-79.

Cambray G, Guerout AM, Mazel D, Integrons, Annu. Rev. Genet. 2010;44:141-66.

Guérin E, Cambray G, Da Re S, Mazel D, Ploy MC, [The SOS response controls antibiotic resistance by regulating the integrase of integrons], Med Sci (Paris) 2010 Jan;26(1):28-30.

El-Amraoui A, Petit C, , Cadherins as targets for genetic diseases., Cold Spring Harb Perspect Biol 2010 Jan; 2(1): a003095.

Marcio Marim, Michael Atlan, Elsa Angelini and Jean-Christophe Olivo-Marin, Compressed Sensing for Digital Holographic Microscopy, IEEE International Symposium on Biomedical Imaging, ISBI, 2010. Best Student Paper Award.

Nitzsche B, Bormuth V, Bräuer C, Howard J, Ionov L, Kerssemakers J, Korten T, Leduc C, Ruhnow F, Diez S, Studying kinesin motors by optical 3D-nanometry in gliding motility assays, Methods Cell Biol. 2010;95:247-71.

Etienne-Manneville S, Scribble at the crossroads, J. Biol. 2009;8(12):104.

Haiss F, Butovas S, Schwarz C, A miniaturized chronic microelectrode drive for awake behaving head restrained mice and rats, J. Neurosci. Methods 2010 Mar;187(1):67-72.

Caputo A, Sarnataro D, Campana V, Costanzo M, Negro A, Sorgato MC, Zurzolo C, Doppel and PrPC co-immunoprecipitate in detergent-resistant membrane domains of epithelial FRT cells, Biochem. J. 2010 Jan;425(2):341-51.

Neyrolles O, Quintana-Murci L, Sexual inequality in tuberculosis, PLoS Med. 2009 Dec;6(12):e1000199.

Etienne-Manneville S, From signaling pathways to microtubule dynamics: the key players, Curr. Opin. Cell Biol. 2010 Feb;22(1):104-11.

Ghosh A, Haiss F, Sydekum E, Schneider R, Gullo M, Wyss MT, Mueggler T, Baltes C, Rudin M, Weber B, Schwab ME, Rewiring of hindlimb corticospinal neurons after spinal cord injury, Nat. Neurosci. 2010 Jan;13(1):97-104.

Louicharoen C, Patin E, Paul R, Nuchprayoon I, Witoonpanich B, Peerapittayamongkol C, Casademont I, Sura T, Laird NM, Singhasivanon P, Quintana-Murci L, Sakuntabhai A, Positively selected G6PD-Mahidol mutation reduces Plasmodium vivax density in Southeast Asians, Science 2009 Dec;326(5959):1546-9.

Barreiro LB, Quintana-Murci L, From evolutionary genetics to human immunology: how selection shapes host defence genes, Nat. Rev. Genet. 2010 Jan;11(1):17-30.

Roux I, Hosie S, Johnson SL, Bahloul A, Cayet N, Nouaille S, Kros CJ, Petit C, Safieddine S, Myosin VI is required for the proper maturation and function of inner hair cell ribbon synapses., Hum Mol Genet 2009 Dec; 18(23): 4615-28.

Martínez L, Laine E, Malliavin TE, Nilges M, Blondel A, ATP conformations and ion binding modes in the active site of anthrax edema factor: a computational analysis, Proteins 2009 Dec;77(4):971-83.

Thierry A, Dujon B, Richard GF, Megasatellites: a new class of large tandem repeats discovered in the pathogenic yeast Candida glabrata, Cell. Mol. Life Sci. 2010 Mar;67(5):671-6.

Paz I, Sachse M, Dupont N, Mounier J, Cederfur C, Enninga J, Leffler H, Poirier F, Prevost MC, Lafont F, Sansonetti P, Galectin-3, a marker for vacuole lysis by invasive pathogens, Cell. Microbiol. 2010 Apr;12(4):530-44.

Nowlan NC, Bourdon C, Dumas G, Tajbakhsh S, Prendergast PJ, Murphy P, Developing bones are differentially affected by compromised skeletal muscle formation, Bone 2010 May;46(5):1275-85.

Leduc C, Campàs O, Joanny JF, Prost J, Bassereau P, Mechanism of membrane nanotube formation by molecular motors, Biochim. Biophys. Acta 2010 Jul;1798(7):1418-26.

Nury H, Bocquet N, Le Poupon C, Raynal B, Haouz A, Corringer PJ, Delarue M, Crystal structure of the extracellular domain of a bacterial ligand-gated ion channel, J. Mol. Biol. 2010 Feb;395(5):1114-27.

Frumerie C, Ducos-Galand M, Gopaul DN, Mazel D, The relaxed requirements of the integron cleavage site allow predictable changes in integron target specificity, Nucleic Acids Res. 2010 Jan;38(2):559-69.

Bouvier G, Evrard-Todeschi N, Girault JP, Bertho G, Automatic clustering of docking poses in virtual screening process using self-organizing map, Bioinformatics 2010 Jan;26(1):53-60.

Marcio Marim, Elsa Angelini and Jean-Christophe Olivo-Marin, Compressed Sensing in microscopy with random projections in the Fourier domain, Image Processing (ICIP), 2009 16th IEEE International Conference on.

Servais A, Meas-Yedid V, Morelon E, Strupler M, Schanne-Klein MC, Legendre C, Olivo-Marin JC, Thervet E, [Recent approaches of quantification of interstitial fibrosis in renal transplantation], Med Sci (Paris) 2009 Nov;25(11):945-50.

Servais A, Meas-Yedid V, Toupance O, Lebranchu Y, Thierry A, Moulin B, Etienne I, Presne C, Hurault de LB, Le Pogamp P, Le Meur Y, Glotz D, Hayem C, Olivo Marin JC, Thervet E, Interstitial fibrosis quantification in renal transplant recipients randomized to continue cyclosporine or convert to sirolimus, Am. J. Transplant. 2009 Nov;9(11):2552-60.

Michalski N, Michel V, Caberlotto E, Lefèvre GM, van Aken AF, Tinevez JY, Bizard E, Houbron C, Weil D, Hardelin JP, Richardson GP, Kros CJ, Martin P, Petit C, , Harmonin-b, an actin-binding scaffold protein, is involved in the adaptation of mechanoelectrical transduction by sensory hair cells., Pflugers Arch 2009 Nov; 459(1): 115-30.

Tajbakhsh S, Gonzalez C, Biased segregation of DNA and centrosomes: moving together or drifting apart?, Nat. Rev. Mol. Cell Biol. 2009 Nov;10(11):804-10.

Jory A, Le Roux I, Gayraud-Morel B, Rocheteau P, Cohen-Tannoudji M, Cumano A, Tajbakhsh S, Numb promotes an increase in skeletal muscle progenitor cells in the embryonic somite, Stem Cells 2009 Nov;27(11):2769-80.

Saade E, Mechold U, Kulyyassov A, Vertut D, Lipinski M, Ogryzko V, Analysis of interaction partners of H4 histone by a new proteomics approach, Proteomics 2009 Nov;9(21):4934-43.

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Berniell-Lee G, Calafell F, Bosch E, Heyer E, Sica L, Mouguiama-Daouda P, van der Veen L, Hombert JM, Quintana-Murci L, Comas D, Genetic and demographic implications of the Bantu expansion: insights from human paternal lineages, Mol. Biol. Evol. 2009 Jul;26(7):1581-9.

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Convertino M, Pellarin R, Catto M, Carotti A, Caflisch A, 9,10-Anthraquinone hinders beta-aggregation: how does a small molecule interfere with Abeta-peptide amyloid fibrillation?, Protein Sci. 2009 Apr;18(4):792-800.

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Campana V, Zentilin L, Mirabile I, Kranjc A, Casanova P, Giacca M, Prusiner SB, Legname G, Zurzolo C, Development of antibody fragments for immunotherapy of prion diseases, Biochem. J. 2009 Mar;418(3):507-15.

Nivoit P, Morens C, Van Assche FA, Jansen E, Poston L, Remacle C, Reusens B, Established diet-induced obesity in female rats leads to offspring hyperphagia, adiposity and insulin resistance, Diabetologia 2009 Jun;52(6):1133-42.

Barbier S, Chatre L, Bras M, Sancho P, Roué G, Virely C, Yuste VJ, Baudet S, Rubio M, Esquerda JE, Sarfati M, Merle-Béral H, Susin SA, Caspase-independent type III programmed cell death in chronic lymphocytic leukemia: the key role of the F-actin cytoskeleton, Haematologica 2009 Apr;94(4):507-17.

Schweisguth F, When you are Dishevelled, fat is good and acid is bad!, Nat. Cell Biol. 2009 Mar;11(3):237-9.

Gayraud-Morel B, Chrétien F, Tajbakhsh S, Skeletal muscle as a paradigm for regenerative biology and medicine, Regen Med 2009 Mar;4(2):293-319.

Mikaty G, Soyer M, Mairey E, Henry N, Dyer D, Forest KT, Morand P, Guadagnini S, Prévost MC, Nassif X, Duménil G, Extracellular bacterial pathogen induces host cell surface reorganization to resist shear stress, PLoS Pathog. 2009 Feb;5(2):e1000314.

Quach H, Barreiro LB, Laval G, Zidane N, Patin E, Kidd KK, Kidd JR, Bouchier C, Veuille M, Antoniewski C, Quintana-Murci L, Signatures of purifying and local positive selection in human miRNAs, Am. J. Hum. Genet. 2009 Mar;84(3):316-27.

Laine E, Blondel A, Malliavin TE, Dynamics and energetics: a consensus analysis of the impact of calcium on EF-CaM protein complex, Biophys. J. 2009 Feb;96(4):1249-63.

Gomes JE, Corado M, Schweisguth F, Van Gogh and Frizzled act redundantly in the Drosophila sensory organ precursor cell to orient its asymmetric division, PLoS ONE 2009;4(2):e4485.

Gousset K, Schiff E, Langevin C, Marijanovic Z, Caputo A, Browman DT, Chenouard N, de Chaumont F, Martino A, Enninga J, Olivo-Marin JC, Männel D, Zurzolo C, Prions hijack tunnelling nanotubes for intercellular spread, Nat. Cell Biol. 2009 Mar;11(3):328-36.

Verdu P, Austerlitz F, Estoup A, Vitalis R, Georges M, Théry S, Froment A, Le Bomin S, Gessain A, Hombert JM, Van der Veen L, Quintana-Murci L, Bahuchet S, Heyer E, Origins and genetic diversity of pygmy hunter-gatherers from Western Central Africa, Curr. Biol. 2009 Feb;19(4):312-8.

Heyer E, Quintana-Murci L, Evolutionary genetics as a tool to target genes involved in phenotypes of medical relevance, Evol Appl 2009 Feb;2(1):71-80.

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Mounier J, Popoff MR, Enninga J, Frame MC, Sansonetti PJ, Van Nhieu GT, The IpaC carboxyterminal effector domain mediates Src-dependent actin polymerization during Shigella invasion of epithelial cells, PLoS Pathog. 2009 Jan;5(1):e1000271.

Lillesaar C, Stigloher C, Tannhäuser B, Wullimann MF, Bally-Cuif L, Axonal projections originating from raphe serotonergic neurons in the developing and adult zebrafish, Danio rerio, using transgenics to visualize raphe-specific pet1 expression, J. Comp. Neurol. 2009 Jan;512(2):158-82.

Ehsani S, Rodrigues CD, Enninga J, Turning on the spotlight–using light to monitor and characterize bacterial effector secretion and translocation, Curr. Opin. Microbiol. 2009 Feb;12(1):24-30.

Cordero ML, Verneuil E, Gallaire F, Baroud CN, Time-resolved temperature rise in a thin liquid film due to laser absorption, Phys Rev E Stat Nonlin Soft Matter Phys 2009 Jan;79(1 Pt 1):011201.

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Marcio M. Marim, Elsa D. Angelini, Jean-Christophe Olivo-Marin, A Compressed Sensing Approach for Biological Microscopy Image Denoising, SPARS'09 - Signal Processing with Adaptive Sparse Structured Representations, Inria Rennes - Bretagne Atlantique, Apr 2009, Saint Malo, France.

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Paladino S, Lebreton S, Tivodar S, Campana V, Tempre R, Zurzolo C, Different GPI-attachment signals affect the oligomerisation of GPI-anchored proteins and their apical sorting, J. Cell. Sci. 2008 Dec;121(Pt 24):4001-7.

Muller H, Thierry A, Coppée JY, Gouyette C, Hennequin C, Sismeiro O, Talla E, Dujon B, Fairhead C, Genomic polymorphism in the population of Candida glabrata: gene copy-number variation and chromosomal translocations, Fungal Genet. Biol. 2009 Mar;46(3):264-76.

Hanton SL, Matheson LA, Chatre L, Brandizzi F, Dynamic organization of COPII coat proteins at endoplasmic reticulum export sites in plant cells, Plant J. 2009 Mar;57(6):963-74.

Koszul R, Fischer G, A prominent role for segmental duplications in modeling eukaryotic genomes, C. R. Biol. 2009 Feb-Mar;332(2-3):254-66.

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Avital Adato, Gaëlle Lefèvre, Benjamin Delprat, Vincent Michel, Nicolas Michalski, Sébastien Chardenoux, Dominique Weil, Aziz El-Amraoui, Christine Petit, Usherin, the defective protein in Usher syndrome type IIA, is likely to be a component of interstereocilia ankle links in the inner ear sensory cells, Human Molecular Genetics, 2005, 14 (24), pp.3921 - 3932. ⟨10.1093/hmg/ddi416⟩.

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Jovanic T, Winding M, Cardona A, Truman JW, Gershow M, Zlatic M, , Neural Substrates of Drosophila Larval Anemotaxis., Curr Biol 2019 02; 29(4): 554-566.e4.