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2021Aspergillus fumigatus, One Uninucleate Species with Disparate Offspring., J Fungi (Basel) 2021 Jan; 7(1): .
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2020Cell Tracking Profiler – a user-driven analysis framework for evaluating 4D live-cell imaging data, J Cell Sci . 2020 Nov 23;133(22):jcs241422.
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2018Targeting the polyadenylation factor EhCFIm25 with RNA aptamers controls survival in Entamoeba histolytica, Sci Rep. 2018 Apr 9;8(1):5720.
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2018Mapping molecular assemblies with fluorescence microscopy and object-based spatial statistics, Nat Commun. 2018 Feb 15;9(1):698.
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2017An objective comparison of cell-tracking algorithms., Nat Methods 2017 Dec; 14(12): 1141-1152.
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2017ICM conversion to epiblast by FGF/ERK inhibition is limited in time and requires transcription and protein degradation, Sci Rep 2017 Sep;7(1):12285.
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2017BioFlow: a non-invasive, image-based method to measure speed, pressure and forces inside living cells., Sci Rep 2017 08; 7(1): 9178.
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2016Routine in vitro culture of P. falciparum gametocytes to evaluate novel transmission-blocking interventions, Nat Protoc 2016 09;11(9):1668-80.
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2016Biophysical measurements in 2D and 3D live cell imaging using fluid dynamics and optical flow, 2016 IEEE 13th International Symposium on Biomedical Imaging (ISBI), Prague, 2016, pp. 980-983.
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2016Intracellular traffic of the lysine and glutamic acid rich protein KERP1 reveals features of endomembrane organization in Entamoeba histolytica, Cell. Microbiol. 2016 Aug;18(8):1134-52.
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2016Human Liver Infection in a Dish: Easy-To-Build 3D Liver Models for Studying Microbial Infection, PLoS ONE 2016;11(2):e0148667.
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2015Amoeboid movement in protozoan pathogens, Semin. Cell Dev. Biol. 2015 Oct;46:128-34.
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2014Quantitative monitoring of the Chlamydia trachomatis developmental cycle using GFP-expressing bacteria, microscopy and flow cytometry, PLoS ONE 2014;9(6):e99197.
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2013Extracting 3D cell parameters from dense tissue environments: application to the development of the mouse heart, Bioinformatics 2013 Mar;29(6):772-9.
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2013Quantitative analysis of polarity in 3D reveals local cell coordination in the embryonic mouse heart, Development 2013 Jan;140(2):395-404.
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2012Icy: an open bioimage informatics platform for extended reproducible research, Nat. Methods 2012 Jun;9(7):690-6.
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2012Newly visualized fibrillar collagen scaffolds dictate Entamoeba histolytica invasion route in the human colon, Cell. Microbiol. 2012 May;14(5):609-21.
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2011Spherical Harmonics based extraction and annotation of cell shape in 3D time-lapse microscopy sequences, Conf Proc IEEE Eng Med Biol Soc 2011;2011:6619-22.
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20103-D active meshes: fast discrete deformable models for cell tracking in 3-D time-lapse microscopy, IEEE Trans Image Process 2011 Jul;20(7):1925-37.
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2010Pak1 phosphorylation enhances cortactin-N-WASP interaction in clathrin-caveolin-independent endocytosis, Traffic 2010 Aug;11(8):1079-91.
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2010Escape of HIV-1-infected dendritic cells from TRAIL-mediated NK cell cytotoxicity during NK-DC cross-talk–a pivotal role of HMGB1, PLoS Pathog. 2010 Apr;6(4):e1000862.
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2009Tracking algorithms chase down pathogens, Biotechnol J 2009 Jun;4(6):838-45.
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2008Automated nuclear analysis of Leishmania major telomeric clusters reveals changes in their organization during the parasite’s life cycle, PLoS ONE 2008;3(6):e2313.
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2005Segmenting and tracking fluorescent cells in dynamic 3-D microscopy with coupled active surfaces, IEEE Trans Image Process 2005 Sep;14(9):1396-410.