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2023Yersiniomics, a Multi-Omics Interactive Database for Yersinia Species., Microbiol Spectr 2023 Feb; 11(2): e0382622.
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2020Bacnet: A user-friendly platform for building multi-omics websites., 2020 Sep; (): .
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2018Genome-wide CRISPR-dCas9 screens in E. coli identify essential genes and phage host factors, PLOS Genetics 14(11): e1007749..
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2017Listeriomics: an Interactive Web Platform for Systems Biology of Listeria, mSystems 2017 Mar-Apr;2(2).
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2017N-terminomics identifies Prli42 as a membrane miniprotein conserved in Firmicutes and critical for stressosome activation in Listeria monocytogenes, Nat Microbiol 2017 Feb;2:17005.
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2017Genome-Wide Transcriptional Start Site Mapping and sRNA Identification in the Pathogen Leptospira interrogans, Front Cell Infect Microbiol 2017;7:10.
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2015Evidence of IL-17, IP-10, and IL-10 involvement in multiple-organ dysfunction and IL-17 pathway in acute renal failure associated to Plasmodium falciparum malaria, J Transl Med 2015 Nov;13:369.
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2015Asymptomatic Plasmodium falciparum infection in children is associated with increased auto-antibody production, high IL-10 plasma levels and antibodies to merozoite surface protein 3, Malar. J. 2015;14:162.
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2014Comparison of widely used Listeria monocytogenes strains EGD, 10403S, and EGD-e highlights genomic variations underlying differences in pathogenicity., mBio 2014 Mar; 5(2): e00969-14.
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2013The intestinal microbiota interferes with the microRNA response upon oral Listeria infection, MBio 2013;4(6):e00707-13.
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2013Specific mutations in H5N1 mainly impact the magnitude and velocity of the host response in mice, BMC Syst Biol 2013;7:69.
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2013A riboswitch-regulated antisense RNA in Listeria monocytogenes, Proc. Natl. Acad. Sci. U.S.A. 2013 Aug;110(32):13132-7.
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2013Multiparameter single-cell profiling of human CD4+FOXP3+ regulatory T-cell populations in homeostatic conditions and during graft-versus-host disease, Blood 2013 Sep;122(10):1802-12.
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2012Impact of lactobacilli on orally acquired listeriosis., Proc Natl Acad Sci U S A 2012 Oct; 109(41): 16684-9.
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2012Comparative transcriptomics of pathogenic and non-pathogenic Listeria species, Mol. Syst. Biol. 2012;8:583.
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2012The condensed chromatin fiber: an allosteric chemo-mechanical machine for signal transduction and genome processing, Phys Biol 2012 Feb;9(1):013001.
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2011Improving the efficiency of multidimensional scaling in the analysis of high-dimensional data using singular value decomposition, Bioinformatics 2011 May;27(10):1413-21.
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2011HMGA1-dependent and independent 7SK RNA gene regulatory activity, RNA Biol 2011 Jan-Feb;8(1):143-57.
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2011New dimensionality reduction methods for the representation of high dimensional ‘omics’ data, Expert Rev. Mol. Diagn. 2011 Jan;11(1):27-34.
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2010Transcription within condensed chromatin: Steric hindrance facilitates elongation, Biophys. J. 2010 Mar;98(5):824-33.
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2009IgG autoantibody to brain beta tubulin III associated with cytokine cluster-II discriminate cerebral malaria in central India, PLoS ONE 2009;4(12):e8245.