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2018High prevalence of cyclovirus Vietnam (CyCV-VN) in plasma samples from Madagascan healthy blood donors, Infect. Genet. Evol. 2018 12;66:9-12.
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2018Early MinION™ nanopore single-molecule sequencing technology enables the characterization of hepatitis B virus genetic complexity in clinical samples, PLoS ONE 2018;13(3):e0194366.
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2017Zika virus evolution on the edges of the Pacific ocean, Emerg Microbes Infect 2017 12;6(12):e111.
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2017Rouxiella badensis sp. nov. and Rouxiella silvae sp. nov. isolated from peat bog soil and emendation description of the genus Rouxiella, Int. J. Syst. Evol. Microbiol. 2017 May;67(5):1255-1259.
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2016MetaGenSense: A web-application for analysis and exploration of high throughput sequencing metagenomic data, Correia D, Doppelt-Azeroual O, Denis JB et al. MetaGenSense: A web-application for analysis and exploration of high throughput sequencing metagenomic data. F1000Research 2016, 4:86 (doi: 10.12688/f1000research.6139.3) .
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2016Genomic epidemiology and global diversity of the emerging bacterial pathogen Elizabethkingia anophelis, Sci Rep 2016;6:30379.
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2016Genome-wide mosaicism within Mycobacterium abscessus: evolutionary and epidemiological implications, BMC Genomics 2016 Feb;17:118.
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2016Mycobacterial pan-genome analysis suggests important role of plasmids in the radiation of type VII secretion systems, Genome Biology and Evolution.
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2015Distinct lineages of Ebola virus in Guinea during the 2014 West African epidemic, Nature 2015 Aug;524(7563):102-4.
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2014Pantoea coffeiphila sp. nov., cause of the ‘potato taste’ of Arabica coffee from the African Great Lakes region, Int. J. Syst. Evol. Microbiol. 2015 Jan;65(Pt 1):23-9.
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2012Automated Phosphopeptide Identification Using Multiple MS/MS Fragmentation Modes, Journal of Proteome Research, 2012, 11 (12), pp.5695 - 5703. ⟨10.1021/pr300507j⟩.
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2008Alignment of LC-MS images, with applications to biomarker discovery and protein identification, Proteomics 2008 Feb;8(4):650-72.
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2006Comparison of statistical significance criteria, J Bioinform Comput Biol 2006 Apr;4(2):537-51.
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2005Assessing computational tools for the discovery of transcription factor binding sites, Nat. Biotechnol. 2005 Jan;23(1):137-44.
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2003Analysis of bacterial RM-systems through genome-scale analysis and related taxonomy issues, In Silico Biol. (Gedrukt) 2003;3(1-2):127-43.