The phylodynamics of partner notification and contact tracing in HIV epidemics
We develop phylodynamics models and methods to study viral epidemics, in particular HIV. This new, trendy domain is in between usual mathematical epidemiology, typically based on compartment models, and phylogenetics. The models used in […]
Renewing Felsenstein’s phylogenetic bootstrap.
The phylogenetic bootstrap was proposed by Joseph Felsenstein more than 30 years ago. This method, based on resampling and replications, is used extensively to assess the robustness of phylogenetic inferences. Its usefulness, simplicity and […]