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About

After obtaining a Master degree in Bioinformatics at the Paris Diderot-Paris 7 University, Jonathan Grandaubert completed is PhD degree at the French National Institute for Agronomical Research (INRA) in the laboratory of Dr. Thierry Rouxel, studying the impact of transposable element invasions on the genome architecture and on the different pathogenic abilities of a species complex of fungal plant-pathogens (Leptosphaeria spp.). To gain more insights on the different evolutionary mechanisms involved in the adaptation or specialization of fungal plant-pathogens to their host, Jonathan joined the team of Prof. Eva Stukenbrock at the Max Plank Institute for Evolutionary Biology in Ploen (Germany). With newly acquired knowledge on transcriptomics, epigenomics and population genomics, Jonathan recently joined the Fungal Biology and Pathogenicity Unit headed by Prof. Christophe d’Enfert at the Institut Pasteur to study the genetic bases of the genotypic and phenotypic variability in the human pathogen Candida albicans using genome-wide association studies.

CV

Work Experience

Mar. 2018 – Now
Position: Post-doctoral Fellow
Place: Institut Pasteur, Paris
Team: Fungal Biology and Pathogenicity
Supervisor: Christophe d’Enfert
Subject: Multidisciplinary approaches to identify genetic determinants of Candida albicans pathogenicity

Apr. 2016 – Oct. 2017

Position: Post-doctoral Fellow
Place: Institut Curie, Paris
Team: Non-coding RNA, epigenetics and genome fluidity
Supervisors: Antonin Morillon & Angela Taddei
Subject: Genome 3D structure and extended lifespan in Saccharomyces cerevisiae

Jan. 2014 – Mar. 2016

Position: Post-doctoral Fellow
Place: Max Planck Institute for Evolutionary Biology, Ploen, Germany
Team: Environmental Genomics
Supervisors: Eva Stukenbrock & Julien Dutheil
Subject: Deciphering the genomic mechanisms driving adaptation in the fungal wheat-pathogen Zymoseptoria tritici

Apr. 2010 – Oct. 2013

Position: PhD Student
Place: INRA – BIOGER-CPP UR1290, Thiverval-Grignon
Team: Effectors and pathogenesis in Leptosphaeria maculans
Supervisor: Thierry Rouxel
Subject: Impact of Transposable Element genome invasions on the diversification of pathogenicity within the species complex Leptosphaeria maculans-Leptosphaeria biglobosa

Jan. 2008 – Aug. 2009

Position: Master 2 internship / Study Engineer
Place: INRA – BIOGER-CPP UR1290, Thiverval-Grignon
Team: Effectors and pathogenesis in Leptosphaeria maculans
Supervisor: Thierry Rouxel
Subject: Genome annotation of the fungal plant-pathogen Leptosphaeria maculans

Mar. 2007 – Jun. 2007

Position: Master 1 internship
Place: IFP Energies nouvelles, Rueil-Malmaison
Team: Biotechnology department
Supervisor: Antoine Margeot
Subject: Impact of genomics to the production of cellulases by the filamentous fungus Trichoderma reesei

Education

2010-2013
PhD in Biology
Université Paris Sud – Paris 11

2006-2008
Master degree in Bioinformatics
Université Paris Diderot – Paris 7

2005-2006
Bachelor degree in Bioinformatics
Université Paris Diderot – Paris 7

2002-2005
2-year university degree in Biology
Université Paris Diderot – Paris 7

Publications

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